NO23G00930.1, NO23G00930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00930.1
Unique NameNO23G00930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1161
Alignment locationchr23:352511..353953 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:352511..353953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO23G00930.1 vs.
Match: EWM22946.1 (hypothetical protein Naga_100184g3 [Nannochloropsis gaditana])

HSP 1 Score: 93.6 bits (231), Expect = 1.500e-15
Identity = 70/167 (41.92%), Postives = 87/167 (52.10%), Query Frame = 0 
Query:   12 VICTAPHGAGGRWRDPHLVSAPSSFTADASSGPSTTTTALHNGAGASSLPPSPSLMLGVDGTLVVSEWPVVSATAGSVDVFPLSRAGLKPRSVDSDQDGEGEEVSEGELMTQEEEKDENEMEFPPGPALFCRTRAVLVDLEEQGGRDGENGEEEEPHPLSPINFSSS 179
            ++  APHGAG R R+PHLV  PS   A  +     T        GA   PPS SL L +D  LV+ +WP V    G+VDVFPL +AG     V+  ++G              EEKDE +M  P GPALF RT AVLV  EE GG + +   EE   PLSP+   S+
Sbjct:   19 IVRPAPHGAGMRVREPHLVPIPSRGEARVNDLHRPTARC-----GAVPPPPSLSLTLALDAVLVLPQWPRVLPHEGAVDVFPLPQAGTA--LVEGMEEGL-------------EEKDEEDMLLPVGPALFRRTCAVLVAREEGGGMEEDGELEEGRQPLSPVRRDSN 165
The following BLAST results are available for this feature:
BLAST of NO23G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22946.11.500e-1541.92hypothetical protein Naga_100184g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00930NO23G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00930.1NO23G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00930.1.cds1NO23G00930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00930.1.cds2NO23G00930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00930.1.cds3NO23G00930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00930.1 ID=NO23G00930.1|Name=NO23G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1161bp
ATGAATTCCTACGCCAGAACCAGCCCCTCATTTGTCATCTGCACTGCCCC
CCACGGAGCTGGCGGCCGCTGGCGCGACCCACACCTCGTGTCCGCTCCCT
CTTCCTTCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCT
CTTCACAATGGCGCCGGTGCTTCCTCTCTTCCACCATCGCCCTCCCTGAT
GCTGGGCGTGGATGGCACGTTGGTTGTGTCAGAGTGGCCAGTGGTCAGTG
CTACAGCAGGATCAGTCGACGTCTTTCCTCTTTCACGGGCAGGGCTGAAA
CCAAGGAGTGTAGACAGCGATCAGGATGGCGAGGGGGAGGAAGTAAGTGA
AGGAGAGTTAATGACACAGGAAGAGGAGAAGGATGAGAATGAGATGGAAT
TTCCTCCGGGGCCGGCCTTGTTTTGTCGGACGCGGGCTGTGCTTGTGGAT
CTAGAGGAGCAGGGAGGGAGGGACGGAGAGAACGGGGAGGAGGAGGAACC
CCATCCATTGTCACCCATCAACTTTTCTTCCTCCCCGCTGCCACATTTCC
CCCTGTCCAAGCATAGTTCCCTGCAGCCTCCTGCAGTGGGAGCAAGAAGA
CTAACAGGAGTAGCAAAGCGAAAGAGATTTGCATTTAAGCTGTGTTTGTG
CATGTACGGGTCTGTGATTTTGGGTGCCGAAGCCAGGGAGAAGAGGCATG
GATGGAGTCGAGAGACGGTGGCCGAGGAGTCTATATTTGTTTCCTCACTG
ACTGTGAGACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTTTTAA
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protein sequence of NO23G00930.1

>NO23G00930.1-protein ID=NO23G00930.1-protein|Name=NO23G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MNSYARTSPSFVICTAPHGAGGRWRDPHLVSAPSSFTADASSGPSTTTTA
LHNGAGASSLPPSPSLMLGVDGTLVVSEWPVVSATAGSVDVFPLSRAGLK
PRSVDSDQDGEGEEVSEGELMTQEEEKDENEMEFPPGPALFCRTRAVLVD
LEEQGGRDGENGEEEEPHPLSPINFSSSPLPHFPLSKHSSLQPPAVGARR
LTGVAKRKRFAFKLCLCMYGSVILGAEAREKRHGWSRETVAEESIFVSSL
TVRPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSF*
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mRNA from alignment at chr23:352511..353953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00930.1 ID=NO23G00930.1|Name=NO23G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at chr23:352511..353953- (Nannochloropsis oceanica)
ATGAATTCCTACGCCAGAACCAGCCCCTCATTTGTCATCTGCACTGCCCC
CCACGGAGCTGGCGGCCGCTGGCGCGACCCACACCTCGTGTCCGCTCCCT
CTTCCTTCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCT
CTTCACAATGGCGCCGGTGCTTCCTCTCTTCCACCATCGCCCTCCCTGAT
GCTGGGCGTGGATGGCACGTTGGTTGTGTCAGAGTGGCCAGTGGTCAGTG
CTACAGCAGGATCAGTCGACGTCTTTCCTCTTTCACGGGCAGGGCTGAAA
CCAAGGAGTGTAGACAGCGATCAGGATGGCGAGGGGGAGGAAGTAAGTGA
AGGAGAGTTAATGACACAGGAAGAGGAGAAGGATGAGAATGAGATGGAAT
TTCCTCCGGGGCCGGCCTTGTTTTGTCGGACGCGGGCTGTGCTTGTGGAT
CTAGAGGAGCAGGGAGGGAGGGACGGAGAGAACGGGGAGGAGGAGGAACC
CCATCCATTGTCACCCATCAACTTTTCTTCCTCCCCGCTGCCACATTTCC
CCCTGTCCAAGCATAGTTCCCTGCAGCCTCCTGCAGTGGGAGCAAGAAGA
CTAACAGGAGTAGCAAAGCGAAAGGTGTGTGTAACGTCAAAGGCTCAAAA
CGGAGAAAGAGAAAGGAAGATGGAAAGGATGTGATTTTTTTTTCAATTTT
AAAACCATGCAGAAACGTGAGGAAGTAAGAGCATTGCTCAGAGATTTGCA
TTTAAGCTGTGTTTGTGCATGTACGGGTCTGTGATTTTGGGTGCCGAAGC
CAGGGAGAAGAGGTAAGCAAGAAGAAGGCGAGGATACAGGGTGAGAGAGA
AGGAGAGGGAGAAGGAGGGGAAGAGAAGGAAAAGGACGGGAACAAGAGGA
GGACTGAAAAGAAGGAGAAGAGGAAGATGGTTTACATGTACAAACAATAG
GGGGGGGGAATACCAATGAACTAGCAGGCATGGATGGAGTCGAGAGACGG
TGGCCGAGGAGTCTATATTTGTTTCCTCACTGACTGTGAGACCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTAA
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Coding sequence (CDS) from alignment at chr23:352511..353953-

>NO23G00930.1 ID=NO23G00930.1|Name=NO23G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at chr23:352511..353953- (Nannochloropsis oceanica)
ATGAATTCCTACGCCAGAACCAGCCCCTCATTTGTCATCTGCACTGCCCC
CCACGGAGCTGGCGGCCGCTGGCGCGACCCACACCTCGTGTCCGCTCCCT
CTTCCTTCACCGCTGATGCCAGCTCGGGACCGTCCACCACTACCACAGCT
CTTCACAATGGCGCCGGTGCTTCCTCTCTTCCACCATCGCCCTCCCTGAT
GCTGGGCGTGGATGGCACGTTGGTTGTGTCAGAGTGGCCAGTGGTCAGTG
CTACAGCAGGATCAGTCGACGTCTTTCCTCTTTCACGGGCAGGGCTGAAA
CCAAGGAGTGTAGACAGCGATCAGGATGGCGAGGGGGAGGAAGTAAGTGA
AGGAGAGTTAATGACACAGGAAGAGGAGAAGGATGAGAATGAGATGGAAT
TTCCTCCGGGGCCGGCCTTGTTTTGTCGGACGCGGGCTGTGCTTGTGGAT
CTAGAGGAGCAGGGAGGGAGGGACGGAGAGAACGGGGAGGAGGAGGAACC
CCATCCATTGTCACCCATCAACTTTTCTTCCTCCCCGCTGCCACATTTCC
CCCTGTCCAAGCATAGTTCCCTGCAGCCTCCTGCAGTGGGAGCAAGAAGA
CTAACAGGAGTAGCAAAGCGAAAGAGATTTGCATTTAAGCTGTGTTTGTG
CATGTACGGGTCTGTGATTTTGGGTGCCGAAGCCAGGGAGAAGAGGCATG
GATGGAGTCGAGAGACGGTGGCCGAGGAGTCTATATTTGTTTCCTCACTG
ACTGTGAGACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTTTTAA
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Synonyms
Publications