NO23G00790, NO23G00790 (gene) Nannochloropsis oceanica

Overview
NameNO23G00790
Unique NameNO23G00790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2260
Alignment locationchr23:298265..300524 -

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Properties
Property NameValue
DescriptionZinc finger, PARP-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:298265..300524 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
GO:0008270zinc ion binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR001510Znf_PARP
Homology
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BLAST of NO23G00790 vs. NCBI_GenBank
Match: EWM22971.1 (Zinc finger, PARP-type [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 1.900e-64
Identity = 168/419 (40.10%), Postives = 229/419 (54.65%), Query Frame = 0 
Query:   19 GPTSRTPSXXXXXXXXXXLYYRGLRIETALPLSVQLDLPVSPGKR-QGHGLSAPTIPSALGASASSLVR---TTGPGFVAMFSGPQYKSSDHVVGYAPAGTRSRCRVCGTGFTAYKMRFGTFFAHVEGFIFLRWHHLRCLRPPSSLEDVTKLSGFGDLQPSDMQLVQDWVDGVNFTPASPPLSPGSSFRTSPSFKGGVTGLRVDSPLSRHTIGNTNDEICSSTTSMTSMMSDDNAEYWLGNKGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSIVRSRPGIGLTIDTALTTTYFTPITSPLGTSPTARTYRYQPTCSGKGKRGDNCSGSGVLSSSPPRSGFLIDNKLPSPRNMCRSRNMKSRAKSPFFACTRRYDKSGGGGKLVELTAEEKKIKLESDRLHRAARVERQRRRSKTL 434
            G  +RTPS           +++ LRI+T      Q D  +S   + Q   +S PT P+A GA   +      TT P F +  SG QYK++ HVVGYAP GT SRCRVCG+GF  + +RFGTFF+H +GFIFLRWHHL CLRPPSSLED+T LSG  +L   D+++VQ W+DG    PAS PLSP S+FR+SPSF       R +      T+G+ ND++CSS TS+ S M   N   W     P                             ST    S     L +    +T+ F PI+SP+ +    +        S + +     S +G+ S+SPPRS ++ID  LPSPR M RSR  K RA++P F+ T + +     G+ VELTA+E+  K ES+ L + A++ER RR+S+T+
Sbjct:   55 GRKARTPSPHEH-------HFKDLRIDTTCLFPDQFDAFLSTSDQYQSAEVSTPTTPNATGAGRVNFDETGATTNPSFASTSSGQQYKTACHVVGYAPEGTASRCRVCGSGFEPHGLRFGTFFSHAQGFIFLRWHHLPCLRPPSSLEDITTLSGHCNLSQDDVKVVQGWIDGNGVAPASLPLSPFSAFRSSPSF---ADSDRENKIPEWQTLGSINDDLCSSDTSINSNM---NGNEW--ESRPRGIRPGQASPLSPPLVWPLQDRIVELADTSTLSTPSHSSGCLGVIANQSTSSFIPISSPVESLLIRKN-------SERERGAQELSHAGLFSTSPPRSDYMIDRNLPSPREMSRSRGTKFRAETPIFSLTGKNNLK--VGESVELTAQEEMAKAESEMLRQTAKIERHRRQSRTI 449
The following BLAST results are available for this feature:
BLAST of NO23G00790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22971.11.900e-6440.10Zinc finger, PARP-type [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006329NSK006329Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00790.1NO23G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601995gene_8430Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100102g20gene7494Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00790.1NO23G00790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00790 ID=NO23G00790|Name=NO23G00790|organism=Nannochloropsis oceanica|type=gene|length=2260bp
ATGAAACAAGGATTTCTGGCTTGCGTCGAGACGGAGTGGTTTCCCCAGAA
CAAGCTCTTAATGAGATATAATCTTTTCCTACCACACGATAACTTGACTT
GAATTGGATTCACTTGCCTCTTTATGCTACATATTCACGAAAGGGATTTT
AATGCCGGATCGGGCCTACTCTGTGTCGTGCAGAGTCTTGAATCCCCATG
GACAGGAAGCGCGTGAATCATCTTGGGGCTTCAGTCTGTCTGCAAACCGC
CCAGGAGCCGTTGGACAAACGTTTGCTGGTGGCCGCCCTGGTGGCGAGTA
GCGAGTTTATGTATTTATTTGACCAGCCAGCCACCAATCGCACCAATTAT
ATGAATGGACTCCTTTGATCGTGAAATTTCCACATCAGAAGCCCAGGGCA
TGAGTGCGGCTATTTTGGTGTCGTTATATATATAGGTAGGAAGGGACATC
CTGTCTTAAACCGTCAGAAAATGTCATGAATAAATGTATGATCTTCAACG
CGTGGAATTAAACATACTAGGACAGGCGGATCTTATGGCTTATGCTGCGT
GGCTTGAGAGAATGCGGGTGTACCATTACCTGCGTTAGTCAATCGATTCA
TGCCTCACCTCTTTCTGACCCCTTCTGCATCTCCTTCCAATCTTCTACAC
AATCAGAACGCTAGAAAGTCTCATGTCTCATCTCTCCTCCTCGAGTCACT
CTTCCGTATACTTTACAAGCGATCATGGACCGACAAGCCGCACTCCGTCC
CCGCGGTCCCCCCGGTCCCCGGAATCGCCTCTGTATTACCGAGGCCTGCG
GATCGAGACAGCTCTCCCCTTGTCTGTCCAGCTTGACCTCCCAGTCTCTC
CAGGAAAAAGGCAAGGACATGGGCTATCGGCACCCACGATACCGTCCGCT
TTGGGCGCAAGCGCGTCTTCATTGGTTAGGACGACGGGACCAGGCTTTGT
AGCTATGTTCTCAGGACCGCAGTATAAAAGTTCTGATCATGTGGTGGGAT
ATGCCCCGGCAGGAACGCGGAGCCGCTGCCGGGTTTGTGGCACTGGCTTC
ACGGCTTATAAAATGCGATTCGGGACATTTTTTGCTCATGTGGAGGGGTT
CATATTCCTTCGCTGGCACCATCTGCGGTGTCTTCGGCCTCCCTCCAGCC
TCGAGGACGTGACAAAGCTATCGGGCTTTGGTGATCTGCAGCCTTCAGAT
ATGCAGTTAGTACAAGATTGGGTCGACGGTGTCAACTTTACTCCTGCCTC
CCCGCCCCTCTCTCCGGGGTCTTCCTTCCGGACCAGCCCGTCCTTCAAGG
GCGGCGTCACCGGTCTTCGGGTGGACAGCCCCCTGTCGCGACACACGATC
GGCAACACGAATGACGAAATTTGTAGCAGCACCACCAGCATGACCAGCAT
GATGAGCGATGATAATGCGGAGTACTGGCTGGGAAATAAGGGACCAGGCC
GTCCTTCCCCGCGTTCCCCTCCTTCCCCAACCTCGCCCTCCCAGTCGCGC
CGCATTGTTGAACTGGCCAGCACTGCTAGCGCTTCCACATCGATCGTACG
ATCCCGTCCTGGTATAGGATTGACGATTGACACGGCTCTGACTACCACTT
ACTTCACACCCATCACTTCCCCATTGGGAACCTCGCCCACAGCCCGTACG
TACCGTTATCAACCCACCTGCAGCGGGAAAGGGAAAAGAGGAGATAATTG
TAGTGGAAGTGGTGTACTCTCCTCCTCTCCTCCACGGAGCGGCTTTCTGA
TTGACAATAAGCTGCCCTCCCCGCGAAATATGTGTCGAAGCCGCAATATG
AAGAGCCGGGCCAAGAGCCCCTTCTTCGCCTGTACGAGACGGTACGACAA
GTCAGGTGGAGGTGGAAAATTGGTTGAGTTGACCGCGGAGGAGAAGAAAA
TCAAGCTGGAATCCGACAGACTCCACCGGGCTGCAAGAGTGGAAAGACAG
CGACGACGGAGCAAGACATTGTGATGTAAATAGATGACATACATGGTCCA
AGCGAGAATTCCAAAATAAGAACTATAAATTGCATAAATGCATAGGGCAG
CAAAATCAAACTTTCAAGGCAGGAAAGGAGGCGAAAGATACGATTATATT
GGATTGAAGGTCGGTCTTAGATATTGTATAATTCTTTGGAAAAGCGTGAT
GTCGAGGAAGAGGGATAGGGTCCAGTTGTGTTGTGGAGTGGAAATAGCGT
ACACGGTACATAGAGAACACACTATCCAAAGGTCGGAAGAGGAAAAAGAA
AGAATTACCA
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protein sequence of NO23G00790.1

>NO23G00790.1-protein ID=NO23G00790.1-protein|Name=NO23G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MSHLSSSSHSSVYFTSDHGPTSRTPSPRSPRSPESPLYYRGLRIETALPL
SVQLDLPVSPGKRQGHGLSAPTIPSALGASASSLVRTTGPGFVAMFSGPQ
YKSSDHVVGYAPAGTRSRCRVCGTGFTAYKMRFGTFFAHVEGFIFLRWHH
LRCLRPPSSLEDVTKLSGFGDLQPSDMQLVQDWVDGVNFTPASPPLSPGS
SFRTSPSFKGGVTGLRVDSPLSRHTIGNTNDEICSSTTSMTSMMSDDNAE
YWLGNKGPGRPSPRSPPSPTSPSQSRRIVELASTASASTSIVRSRPGIGL
TIDTALTTTYFTPITSPLGTSPTARTYRYQPTCSGKGKRGDNCSGSGVLS
SSPPRSGFLIDNKLPSPRNMCRSRNMKSRAKSPFFACTRRYDKSGGGGKL
VELTAEEKKIKLESDRLHRAARVERQRRRSKTL*
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Synonyms
Publications