NO23G00790.1, NO23G00790.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G00790.1
Unique Name	NO23G00790.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2260
Alignment location	chr23:298265..300524 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:298265..300524 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO23G00790.1 vs.
Match: EWM22971.1 (Zinc finger, PARP-type [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 4.700e-71
Identity = 183/419 (43.68%), Postives = 249/419 (59.43%), Query Frame = 0

Query:   19 GPTSRTPSPRSPRSPESPLYYRGLRIETALPLSVQLDLPVSPGKR-QGHGLSAPTIPSALGASASSLVRT---TGPGFVAMFSGPQYKSSDHVVGYAPAGTRSRCRVCGTGFTAYKMRFGTFFAHVEGFIFLRWHHLRCLRPPSSLEDVTKLSGFGDLQPSDMQLVQDWVDGVNFTPASPPLSPGSSFRTSPSFKGGVTGLRVDSPLSRHTIGNTNDEICSSTTSMTSMMSDDNAEYWLGNKGPGRPSPRSPPSPTSPSQSRRIVELASTASASTSIVRSRPGIGLTIDTALTTTYFTPITSPLGTSPTARTYRYQPTCSGKGKRGDNCSGSGVLSSSPPRSGFLIDNKLPSPRNMCRSRNMKSRAKSPFFACTRRYDKSGGGGKLVELTAEEKKIKLESDRLHRAARVERQRRRSKTL 434
            G  +RTPSP          +++ LRI+T      Q D  +S   + Q   +S PT P+A GA   +   T   T P F +  SG QYK++ HVVGYAP GT SRCRVCG+GF  + +RFGTFF+H +GFIFLRWHHL CLRPPSSLED+T LSG  +L   D+++VQ W+DG    PAS PLSP S+FR+SPSF       R +      T+G+ ND++CSS TS+ S M+ +  E       PG+ SP SPP    P Q  RIVELA T++ ST    S     L +    +T+ F PI+SP+ +    +        S + +     S +G+ S+SPPRS ++ID  LPSPR M RSR  K RA++P F+ T + +     G+ VELTA+E+  K ES+ L + A++ER RR+S+T+
Sbjct:   55 GRKARTPSPHEH-------HFKDLRIDTTCLFPDQFDAFLSTSDQYQSAEVSTPTTPNATGAGRVNFDETGATTNPSFASTSSGQQYKTACHVVGYAPEGTASRCRVCGSGFEPHGLRFGTFFSHAQGFIFLRWHHLPCLRPPSSLEDITTLSGHCNLSQDDVKVVQGWIDGNGVAPASLPLSPFSAFRSSPSF---ADSDRENKIPEWQTLGSINDDLCSSDTSINSNMNGNEWESRPRGIRPGQASPLSPPL-VWPLQD-RIVELADTSTLSTP---SHSSGCLGVIANQSTSSFIPISSPVESLLIRKN-------SERERGAQELSHAGLFSTSPPRSDYMIDRNLPSPREMSRSRGTKFRAETPIFSLTGKNNLK--VGESVELTAQEEMAKAESEMLRQTAKIERHRRQSRTI 449

The following BLAST results are available for this feature:

BLAST of NO23G00790.1 vs.

BLAST of NO23G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22971.1	4.700e-71	43.68	Zinc finger, PARP-type [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G00790	NO23G00790	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00790.1	NO23G00790.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00790.1.cds1	NO23G00790.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:298265..300524-
coding sequence from alignment at chr23:298265..300524-

mRNA sequence

>NO23G00790.1 ID=NO23G00790.1|Name=NO23G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2260bp
ATGAAACAAGGATTTCTGGCTTGCGTCGAGACGGAGTGGTTTCCCCAGAA
CAAGCTCTTAATGAGATATAATCTTTTCCTACCACACGATAACTTGACTT
GAATTGGATTCACTTGCCTCTTTATGCTACATATTCACGAAAGGGATTTT
AATGCCGGATCGGGCCTACTCTGTGTCGTGCAGAGTCTTGAATCCCCATG
GACAGGAAGCGCGTGAATCATCTTGGGGCTTCAGTCTGTCTGCAAACCGC
CCAGGAGCCGTTGGACAAACGTTTGCTGGTGGCCGCCCTGGTGGCGAGTA
GCGAGTTTATGTATTTATTTGACCAGCCAGCCACCAATCGCACCAATTAT
ATGAATGGACTCCTTTGATCGTGAAATTTCCACATCAGAAGCCCAGGGCA
TGAGTGCGGCTATTTTGGTGTCGTTATATATATAGGTAGGAAGGGACATC
CTGTCTTAAACCGTCAGAAAATGTCATGAATAAATGTATGATCTTCAACG
CGTGGAATTAAACATACTAGGACAGGCGGATCTTATGGCTTATGCTGCGT
GGCTTGAGAGAATGCGGGTGTACCATTACCTGCGTTAGTCAATCGATTCA
TGCCTCACCTCTTTCTGACCCCTTCTGCATCTCCTTCCAATCTTCTACAC
AATCAGAACGCTAGAAAGTCTCATGTCTCATCTCTCCTCCTCGAGTCACT
CTTCCGTATACTTTACAAGCGATCATGGACCGACAAGCCGCACTCCGTCC
CCGCGGTCCCCCCGGTCCCCGGAATCGCCTCTGTATTACCGAGGCCTGCG
GATCGAGACAGCTCTCCCCTTGTCTGTCCAGCTTGACCTCCCAGTCTCTC
CAGGAAAAAGGCAAGGACATGGGCTATCGGCACCCACGATACCGTCCGCT
TTGGGCGCAAGCGCGTCTTCATTGGTTAGGACGACGGGACCAGGCTTTGT
AGCTATGTTCTCAGGACCGCAGTATAAAAGTTCTGATCATGTGGTGGGAT
ATGCCCCGGCAGGAACGCGGAGCCGCTGCCGGGTTTGTGGCACTGGCTTC
ACGGCTTATAAAATGCGATTCGGGACATTTTTTGCTCATGTGGAGGGGTT
CATATTCCTTCGCTGGCACCATCTGCGGTGTCTTCGGCCTCCCTCCAGCC
TCGAGGACGTGACAAAGCTATCGGGCTTTGGTGATCTGCAGCCTTCAGAT
ATGCAGTTAGTACAAGATTGGGTCGACGGTGTCAACTTTACTCCTGCCTC
CCCGCCCCTCTCTCCGGGGTCTTCCTTCCGGACCAGCCCGTCCTTCAAGG
GCGGCGTCACCGGTCTTCGGGTGGACAGCCCCCTGTCGCGACACACGATC
GGCAACACGAATGACGAAATTTGTAGCAGCACCACCAGCATGACCAGCAT
GATGAGCGATGATAATGCGGAGTACTGGCTGGGAAATAAGGGACCAGGCC
GTCCTTCCCCGCGTTCCCCTCCTTCCCCAACCTCGCCCTCCCAGTCGCGC
CGCATTGTTGAACTGGCCAGCACTGCTAGCGCTTCCACATCGATCGTACG
ATCCCGTCCTGGTATAGGATTGACGATTGACACGGCTCTGACTACCACTT
ACTTCACACCCATCACTTCCCCATTGGGAACCTCGCCCACAGCCCGTACG
TACCGTTATCAACCCACCTGCAGCGGGAAAGGGAAAAGAGGAGATAATTG
TAGTGGAAGTGGTGTACTCTCCTCCTCTCCTCCACGGAGCGGCTTTCTGA
TTGACAATAAGCTGCCCTCCCCGCGAAATATGTGTCGAAGCCGCAATATG
AAGAGCCGGGCCAAGAGCCCCTTCTTCGCCTGTACGAGACGGTACGACAA
GTCAGGTGGAGGTGGAAAATTGGTTGAGTTGACCGCGGAGGAGAAGAAAA
TCAAGCTGGAATCCGACAGACTCCACCGGGCTGCAAGAGTGGAAAGACAG
CGACGACGGAGCAAGACATTGTGATGTAAATAGATGACATACATGGTCCA
AGCGAGAATTCCAAAATAAGAACTATAAATTGCATAAATGCATAGGGCAG
CAAAATCAAACTTTCAAGGCAGGAAAGGAGGCGAAAGATACGATTATATT
GGATTGAAGGTCGGTCTTAGATATTGTATAATTCTTTGGAAAAGCGTGAT
GTCGAGGAAGAGGGATAGGGTCCAGTTGTGTTGTGGAGTGGAAATAGCGT
ACACGGTACATAGAGAACACACTATCCAAAGGTCGGAAGAGGAAAAAGAA
AGAATTACCA

protein sequence of NO23G00790.1

>NO23G00790.1-protein ID=NO23G00790.1-protein|Name=NO23G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MSHLSSSSHSSVYFTSDHGPTSRTPSPRSPRSPESPLYYRGLRIETALPL
SVQLDLPVSPGKRQGHGLSAPTIPSALGASASSLVRTTGPGFVAMFSGPQ
YKSSDHVVGYAPAGTRSRCRVCGTGFTAYKMRFGTFFAHVEGFIFLRWHH
LRCLRPPSSLEDVTKLSGFGDLQPSDMQLVQDWVDGVNFTPASPPLSPGS
SFRTSPSFKGGVTGLRVDSPLSRHTIGNTNDEICSSTTSMTSMMSDDNAE
YWLGNKGPGRPSPRSPPSPTSPSQSRRIVELASTASASTSIVRSRPGIGL
TIDTALTTTYFTPITSPLGTSPTARTYRYQPTCSGKGKRGDNCSGSGVLS
SSPPRSGFLIDNKLPSPRNMCRSRNMKSRAKSPFFACTRRYDKSGGGGKL
VELTAEEKKIKLESDRLHRAARVERQRRRSKTL*

mRNA from alignment at chr23:298265..300524-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G00790.1 ID=NO23G00790.1|Name=NO23G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2260bp|location=Sequence derived from alignment at chr23:298265..300524- (Nannochloropsis oceanica)
ATGAAACAAGGATTTCTGGCTTGCGTCGAGACGGAGTGGTTTCCCCAGAA
CAAGCTCTTAATGAGATATAATCTTTTCCTACCACACGATAACTTGACTT
GAATTGGATTCACTTGCCTCTTTATGCTACATATTCACGAAAGGGATTTT
AATGCCGGATCGGGCCTACTCTGTGTCGTGCAGAGTCTTGAATCCCCATG
GACAGGAAGCGCGTGAATCATCTTGGGGCTTCAGTCTGTCTGCAAACCGC
CCAGGAGCCGTTGGACAAACGTTTGCTGGTGGCCGCCCTGGTGGCGAGTA
GCGAGTTTATGTATTTATTTGACCAGCCAGCCACCAATCGCACCAATTAT
ATGAATGGACTCCTTTGATCGTGAAATTTCCACATCAGAAGCCCAGGGCA
TGAGTGCGGCTATTTTGGTGTCGTTATATATATAGGTAGGAAGGGACATC
CTGTCTTAAACCGTCAGAAAATGTCATGAATAAATGTATGATCTTCAACG
CGTGGAATTAAACATACTAGGACAGGCGGATCTTATGGCTTATGCTGCGT
GGCTTGAGAGAATGCGGGTGTACCATTACCTGCGTTAGTCAATCGATTCA
TGCCTCACCTCTTTCTGACCCCTTCTGCATCTCCTTCCAATCTTCTACAC
AATCAGAACGCTAGAAAGTCTCATGTCTCATCTCTCCTCCTCGAGTCACT
CTTCCGTATACTTTACAAGCGATCATGGACCGACAAGCCGCACTCCGTCC
CCGCGGTCCCCCCGGTCCCCGGAATCGCCTCTGTATTACCGAGGCCTGCG
GATCGAGACAGCTCTCCCCTTGTCTGTCCAGCTTGACCTCCCAGTCTCTC
CAGGAAAAAGGCAAGGACATGGGCTATCGGCACCCACGATACCGTCCGCT
TTGGGCGCAAGCGCGTCTTCATTGGTTAGGACGACGGGACCAGGCTTTGT
AGCTATGTTCTCAGGACCGCAGTATAAAAGTTCTGATCATGTGGTGGGAT
ATGCCCCGGCAGGAACGCGGAGCCGCTGCCGGGTTTGTGGCACTGGCTTC
ACGGCTTATAAAATGCGATTCGGGACATTTTTTGCTCATGTGGAGGGGTT
CATATTCCTTCGCTGGCACCATCTGCGGTGTCTTCGGCCTCCCTCCAGCC
TCGAGGACGTGACAAAGCTATCGGGCTTTGGTGATCTGCAGCCTTCAGAT
ATGCAGTTAGTACAAGATTGGGTCGACGGTGTCAACTTTACTCCTGCCTC
CCCGCCCCTCTCTCCGGGGTCTTCCTTCCGGACCAGCCCGTCCTTCAAGG
GCGGCGTCACCGGTCTTCGGGTGGACAGCCCCCTGTCGCGACACACGATC
GGCAACACGAATGACGAAATTTGTAGCAGCACCACCAGCATGACCAGCAT
GATGAGCGATGATAATGCGGAGTACTGGCTGGGAAATAAGGGACCAGGCC
GTCCTTCCCCGCGTTCCCCTCCTTCCCCAACCTCGCCCTCCCAGTCGCGC
CGCATTGTTGAACTGGCCAGCACTGCTAGCGCTTCCACATCGATCGTACG
ATCCCGTCCTGGTATAGGATTGACGATTGACACGGCTCTGACTACCACTT
ACTTCACACCCATCACTTCCCCATTGGGAACCTCGCCCACAGCCCGTACG
TACCGTTATCAACCCACCTGCAGCGGGAAAGGGAAAAGAGGAGATAATTG
TAGTGGAAGTGGTGTACTCTCCTCCTCTCCTCCACGGAGCGGCTTTCTGA
TTGACAATAAGCTGCCCTCCCCGCGAAATATGTGTCGAAGCCGCAATATG
AAGAGCCGGGCCAAGAGCCCCTTCTTCGCCTGTACGAGACGGTACGACAA
GTCAGGTGGAGGTGGAAAATTGGTTGAGTTGACCGCGGAGGAGAAGAAAA
TCAAGCTGGAATCCGACAGACTCCACCGGGCTGCAAGAGTGGAAAGACAG
CGACGACGGAGCAAGACATTGTGATGTAAATAGATGACATACATGGTCCA
AGCGAGAATTCCAAAATAAGAACTATAAATTGCATAAATGCATAGGGCAG
CAAAATCAAACTTTCAAGGCAGGAAAGGAGGCGAAAGATACGATTATATT
GGATTGAAGGTCGGTCTTAGATATTGTATAATTCTTTGGAAAAGCGTGAT
GTCGAGGAAGAGGGATAGGGTCCAGTTGTGTTGTGGAGTGGAAATAGCGT
ACACGGTACATAGAGAACACACTATCCAAAGGTCGGAAGAGGAAAAAGAA
AGAATTACCA

Coding sequence (CDS) from alignment at chr23:298265..300524-

>NO23G00790.1 ID=NO23G00790.1|Name=NO23G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr23:298265..300524- (Nannochloropsis oceanica)
ATGTCTCATCTCTCCTCCTCGAGTCACTCTTCCGTATACTTTACAAGCGA
TCATGGACCGACAAGCCGCACTCCGTCCCCGCGGTCCCCCCGGTCCCCGG
AATCGCCTCTGTATTACCGAGGCCTGCGGATCGAGACAGCTCTCCCCTTG
TCTGTCCAGCTTGACCTCCCAGTCTCTCCAGGAAAAAGGCAAGGACATGG
GCTATCGGCACCCACGATACCGTCCGCTTTGGGCGCAAGCGCGTCTTCAT
TGGTTAGGACGACGGGACCAGGCTTTGTAGCTATGTTCTCAGGACCGCAG
TATAAAAGTTCTGATCATGTGGTGGGATATGCCCCGGCAGGAACGCGGAG
CCGCTGCCGGGTTTGTGGCACTGGCTTCACGGCTTATAAAATGCGATTCG
GGACATTTTTTGCTCATGTGGAGGGGTTCATATTCCTTCGCTGGCACCAT
CTGCGGTGTCTTCGGCCTCCCTCCAGCCTCGAGGACGTGACAAAGCTATC
GGGCTTTGGTGATCTGCAGCCTTCAGATATGCAGTTAGTACAAGATTGGG
TCGACGGTGTCAACTTTACTCCTGCCTCCCCGCCCCTCTCTCCGGGGTCT
TCCTTCCGGACCAGCCCGTCCTTCAAGGGCGGCGTCACCGGTCTTCGGGT
GGACAGCCCCCTGTCGCGACACACGATCGGCAACACGAATGACGAAATTT
GTAGCAGCACCACCAGCATGACCAGCATGATGAGCGATGATAATGCGGAG
TACTGGCTGGGAAATAAGGGACCAGGCCGTCCTTCCCCGCGTTCCCCTCC
TTCCCCAACCTCGCCCTCCCAGTCGCGCCGCATTGTTGAACTGGCCAGCA
CTGCTAGCGCTTCCACATCGATCGTACGATCCCGTCCTGGTATAGGATTG
ACGATTGACACGGCTCTGACTACCACTTACTTCACACCCATCACTTCCCC
ATTGGGAACCTCGCCCACAGCCCGTACGTACCGTTATCAACCCACCTGCA
GCGGGAAAGGGAAAAGAGGAGATAATTGTAGTGGAAGTGGTGTACTCTCC
TCCTCTCCTCCACGGAGCGGCTTTCTGATTGACAATAAGCTGCCCTCCCC
GCGAAATATGTGTCGAAGCCGCAATATGAAGAGCCGGGCCAAGAGCCCCT
TCTTCGCCTGTACGAGACGGTACGACAAGTCAGGTGGAGGTGGAAAATTG
GTTGAGTTGACCGCGGAGGAGAAGAAAATCAAGCTGGAATCCGACAGACT
CCACCGGGCTGCAAGAGTGGAAAGACAGCGACGACGGAGCAAGACATTGT
GA

Synonyms

Publications