NO23G00750, NO23G00750 (gene) Nannochloropsis oceanica

Overview
NameNO23G00750
Unique NameNO23G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length988
Alignment locationchr23:284862..285849 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:284862..285849 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO23G00750 vs. NCBI_GenBank
Match: EWM22965.1 (hypothetical protein Naga_100102g15 [Nannochloropsis gaditana])

HSP 1 Score: 131.3 bits (329), Expect = 3.000e-27
Identity = 84/175 (48.00%), Postives = 106/175 (60.57%), Query Frame = 0 
Query:   14 SFSPAFTSAFLPCLESP-------RPFYHRTRSPKLSALPPGSFLQTTSTNTFLAEMTEDYGFIAPTFEARLDVGALFSLVVMSVVVSLFWLRVATAITDREXXXXXXXXXXXXRLKRLTGRMNAEDEEELRLAEEERAKPALGLGVGSFLRNFRLINEGGKRQDGEGGNDGSND 182
            S S     +F+P L  P       RP   R   P L A  P        ++  +AE T D+G + P FEARLDVGALFSLV+MS+VV+LFW RV TAITDRE            R+K+LTGR +  DEE LRLA+EE+A+PALG  VGSFLR FRL+NEG + ++  G +D S +
Sbjct:    8 SISSRTHPSFVPPLSRPPVLRSGGRPATTRATRPFLPA--PAHLHCNVWSSILIAETTADFGPVNPIFEARLDVGALFSLVIMSLVVALFWARVITAITDREKRESLERIQREIRVKKLTGRFDGGDEETLRLAKEEQARPALG-EVGSFLRKFRLVNEGRRIKEDGGADDNSTE 179
The following BLAST results are available for this feature:
BLAST of NO23G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22965.13.000e-2748.00hypothetical protein Naga_100102g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006323NSK006323Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00750.1NO23G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601970gene_8424Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100102g15gene7489Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00750.1NO23G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00750 ID=NO23G00750|Name=NO23G00750|organism=Nannochloropsis oceanica|type=gene|length=988bp
ACAGGGGGAGGACAGCATTATCGGTAACGTACGACAACACGTGTTAGACG
AACGTGAATTCAGCAGCGCAATTTTCCCTGGCATTTATGCAACCTCTTCG
TCTTCCTCAATGTGGCACATCTCGGTCCATACCCGTAGCTGTCTCCCTAC
GCGCACGTCCCTGCTTCTCCCGGAAGACCGTGGCTCTTTTATCATCCTTA
CATCTGTGCCCCCGCTCCGTGCTTTCCCGTTTAAGGTCGAGAGCTCTGGC
TTTCCCTCGATCCCATTTATTCCCCCCCACATCCTCCTATACTACAGGAC
GCGACTGCAGAATTCATGAAGCGACGAACCCACCATTCGCTGCTGCTGGG
TCAGTCTTTCTCACCCGCCTTCACATCTGCATTCCTTCCCTGTCTTGAAA
GTCCGCGTCCCTTTTATCATCGCACCCGTAGTCCCAAGTTGTCTGCTCTG
CCCCCTGGCTCATTTCTTCAGACCACTTCGACAAACACGTTTCTGGCCGA
AATGACAGAAGACTATGGCTTTATCGCGCCGACGTTCGAGGCACGTTTGG
ATGTGGGTGCACTCTTCTCGTTAGTGGTCATGTCCGTGGTCGTGTCTTTG
TTCTGGTTAAGAGTCGCGACTGCCATTACAGATCGTGAGAAGAGGGAAAA
GGTGGAGAAGATTCAAAAGGAAGTCCGGCTCAAAAGGCTGACGGGGAGGA
TGAATGCCGAAGATGAAGAGGAACTGCGACTAGCAGAGGAGGAACGGGCC
AAGCCAGCATTGGGCCTTGGAGTTGGATCTTTTCTGCGGAATTTCCGCTT
GATCAACGAAGGCGGGAAGAGACAAGATGGCGAAGGTGGCAACGACGGCA
GCAACGACAAATAAAAGTAAGGAGAGAATTAAAATTGGGTTTGATAGTCG
TTTGTATCCGGATTGCCTATATTTTTTTCTCGGCAGGGTTATTGCCCTGT
AGGAAAAAAGAAATAACAGCCTGCCAGGAAGAATTAGC
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protein sequence of NO23G00750.1

>NO23G00750.1-protein ID=NO23G00750.1-protein|Name=NO23G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MKRRTHHSLLLGQSFSPAFTSAFLPCLESPRPFYHRTRSPKLSALPPGSF
LQTTSTNTFLAEMTEDYGFIAPTFEARLDVGALFSLVVMSVVVSLFWLRV
ATAITDREKREKVEKIQKEVRLKRLTGRMNAEDEEELRLAEEERAKPALG
LGVGSFLRNFRLINEGGKRQDGEGGNDGSNDK*
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Synonyms
Publications