NO23G00750.1, NO23G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00750.1
Unique NameNO23G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length988
Alignment locationchr23:284862..285849 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:284862..285849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00750.1 vs.
Match: EWM22965.1 (hypothetical protein Naga_100102g15 [Nannochloropsis gaditana])

HSP 1 Score: 148.7 bits (374), Expect = 1.800e-32
Identity = 91/175 (52.00%), Postives = 117/175 (66.86%), Query Frame = 0 
Query:   14 SFSPAFTSAFLPCLESP-------RPFYHRTRSPKLSALPPGSFLQTTSTNTFLAEMTEDYGFIAPTFEARLDVGALFSLVVMSVVVSLFWLRVATAITDREKREKVEKIQKEVRLKRLTGRMNAEDEEELRLAEEERAKPALGLGVGSFLRNFRLINEGGKRQDGEGGNDGSND 182
            S S     +F+P L  P       RP   R   P L A  P        ++  +AE T D+G + P FEARLDVGALFSLV+MS+VV+LFW RV TAITDREKRE +E+IQ+E+R+K+LTGR +  DEE LRLA+EE+A+PALG  VGSFLR FRL+NEG + ++  G +D S +
Sbjct:    8 SISSRTHPSFVPPLSRPPVLRSGGRPATTRATRPFLPA--PAHLHCNVWSSILIAETTADFGPVNPIFEARLDVGALFSLVIMSLVVALFWARVITAITDREKRESLERIQREIRVKKLTGRFDGGDEETLRLAKEEQARPALG-EVGSFLRKFRLVNEGRRIKEDGGADDNSTE 179
The following BLAST results are available for this feature:
BLAST of NO23G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22965.11.800e-3252.00hypothetical protein Naga_100102g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00750NO23G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00750.1NO23G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00750.1.cds1NO23G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00750.1 ID=NO23G00750.1|Name=NO23G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=988bp
ACAGGGGGAGGACAGCATTATCGGTAACGTACGACAACACGTGTTAGACG
AACGTGAATTCAGCAGCGCAATTTTCCCTGGCATTTATGCAACCTCTTCG
TCTTCCTCAATGTGGCACATCTCGGTCCATACCCGTAGCTGTCTCCCTAC
GCGCACGTCCCTGCTTCTCCCGGAAGACCGTGGCTCTTTTATCATCCTTA
CATCTGTGCCCCCGCTCCGTGCTTTCCCGTTTAAGGTCGAGAGCTCTGGC
TTTCCCTCGATCCCATTTATTCCCCCCCACATCCTCCTATACTACAGGAC
GCGACTGCAGAATTCATGAAGCGACGAACCCACCATTCGCTGCTGCTGGG
TCAGTCTTTCTCACCCGCCTTCACATCTGCATTCCTTCCCTGTCTTGAAA
GTCCGCGTCCCTTTTATCATCGCACCCGTAGTCCCAAGTTGTCTGCTCTG
CCCCCTGGCTCATTTCTTCAGACCACTTCGACAAACACGTTTCTGGCCGA
AATGACAGAAGACTATGGCTTTATCGCGCCGACGTTCGAGGCACGTTTGG
ATGTGGGTGCACTCTTCTCGTTAGTGGTCATGTCCGTGGTCGTGTCTTTG
TTCTGGTTAAGAGTCGCGACTGCCATTACAGATCGTGAGAAGAGGGAAAA
GGTGGAGAAGATTCAAAAGGAAGTCCGGCTCAAAAGGCTGACGGGGAGGA
TGAATGCCGAAGATGAAGAGGAACTGCGACTAGCAGAGGAGGAACGGGCC
AAGCCAGCATTGGGCCTTGGAGTTGGATCTTTTCTGCGGAATTTCCGCTT
GATCAACGAAGGCGGGAAGAGACAAGATGGCGAAGGTGGCAACGACGGCA
GCAACGACAAATAAAAGTAAGGAGAGAATTAAAATTGGGTTTGATAGTCG
TTTGTATCCGGATTGCCTATATTTTTTTCTCGGCAGGGTTATTGCCCTGT
AGGAAAAAAGAAATAACAGCCTGCCAGGAAGAATTAGC
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protein sequence of NO23G00750.1

>NO23G00750.1-protein ID=NO23G00750.1-protein|Name=NO23G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MKRRTHHSLLLGQSFSPAFTSAFLPCLESPRPFYHRTRSPKLSALPPGSF
LQTTSTNTFLAEMTEDYGFIAPTFEARLDVGALFSLVVMSVVVSLFWLRV
ATAITDREKREKVEKIQKEVRLKRLTGRMNAEDEEELRLAEEERAKPALG
LGVGSFLRNFRLINEGGKRQDGEGGNDGSNDK*
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mRNA from alignment at chr23:284862..285849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00750.1 ID=NO23G00750.1|Name=NO23G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=988bp|location=Sequence derived from alignment at chr23:284862..285849- (Nannochloropsis oceanica)
ACAGGGGGAGGACAGCATTATCGGTAACGTACGACAACACGTGTTAGACG
AACGTGAATTCAGCAGCGCAATTTTCCCTGGCATTTATGCAACCTCTTCG
TCTTCCTCAATGTGGCACATCTCGGTCCATACCCGTAGCTGTCTCCCTAC
GCGCACGTCCCTGCTTCTCCCGGAAGACCGTGGCTCTTTTATCATCCTTA
CATCTGTGCCCCCGCTCCGTGCTTTCCCGTTTAAGGTCGAGAGCTCTGGC
TTTCCCTCGATCCCATTTATTCCCCCCCACATCCTCCTATACTACAGGAC
GCGACTGCAGAATTCATGAAGCGACGAACCCACCATTCGCTGCTGCTGGG
TCAGTCTTTCTCACCCGCCTTCACATCTGCATTCCTTCCCTGTCTTGAAA
GTCCGCGTCCCTTTTATCATCGCACCCGTAGTCCCAAGTTGTCTGCTCTG
CCCCCTGGCTCATTTCTTCAGACCACTTCGACAAACACGTTTCTGGCCGA
AATGACAGAAGACTATGGCTTTATCGCGCCGACGTTCGAGGCACGTTTGG
ATGTGGGTGCACTCTTCTCGTTAGTGGTCATGTCCGTGGTCGTGTCTTTG
TTCTGGTTAAGAGTCGCGACTGCCATTACAGATCGTGAGAAGAGGGAAAA
GGTGGAGAAGATTCAAAAGGAAGTCCGGCTCAAAAGGCTGACGGGGAGGA
TGAATGCCGAAGATGAAGAGGAACTGCGACTAGCAGAGGAGGAACGGGCC
AAGCCAGCATTGGGCCTTGGAGTTGGATCTTTTCTGCGGAATTTCCGCTT
GATCAACGAAGGCGGGAAGAGACAAGATGGCGAAGGTGGCAACGACGGCA
GCAACGACAAATAAAAGTAAGGAGAGAATTAAAATTGGGTTTGATAGTCG
TTTGTATCCGGATTGCCTATATTTTTTTCTCGGCAGGGTTATTGCCCTGT
AGGAAAAAAGAAATAACAGCCTGCCAGGAAGAATTAGC
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Coding sequence (CDS) from alignment at chr23:284862..285849-

>NO23G00750.1 ID=NO23G00750.1|Name=NO23G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr23:284862..285849- (Nannochloropsis oceanica)
ATGAAGCGACGAACCCACCATTCGCTGCTGCTGGGTCAGTCTTTCTCACC
CGCCTTCACATCTGCATTCCTTCCCTGTCTTGAAAGTCCGCGTCCCTTTT
ATCATCGCACCCGTAGTCCCAAGTTGTCTGCTCTGCCCCCTGGCTCATTT
CTTCAGACCACTTCGACAAACACGTTTCTGGCCGAAATGACAGAAGACTA
TGGCTTTATCGCGCCGACGTTCGAGGCACGTTTGGATGTGGGTGCACTCT
TCTCGTTAGTGGTCATGTCCGTGGTCGTGTCTTTGTTCTGGTTAAGAGTC
GCGACTGCCATTACAGATCGTGAGAAGAGGGAAAAGGTGGAGAAGATTCA
AAAGGAAGTCCGGCTCAAAAGGCTGACGGGGAGGATGAATGCCGAAGATG
AAGAGGAACTGCGACTAGCAGAGGAGGAACGGGCCAAGCCAGCATTGGGC
CTTGGAGTTGGATCTTTTCTGCGGAATTTCCGCTTGATCAACGAAGGCGG
GAAGAGACAAGATGGCGAAGGTGGCAACGACGGCAGCAACGACAAATAA
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Synonyms
Publications