NO23G00700, NO23G00700 (gene) Nannochloropsis oceanica

Overview
NameNO23G00700
Unique NameNO23G00700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1789
Alignment locationchr23:264358..266146 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:264358..266146 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G00700 vs. NCBI_GenBank
Match: EWM22967.1 (hypothetical protein Naga_100102g7 [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 1.200e-26
Identity = 132/335 (39.40%), Postives = 174/335 (51.94%), Query Frame = 0 
Query:   45 SSSEPSPP-RSHLDGGDPLGSQYKSPMQFQNAMDLVQRLQAQLKTVRLDKDRLKERCFLLEREVKDNLRHHYPSSTSYAPPLPMPAISPPSTTTAHKFGWPYENYPLHKYQILEKTLAEERVTRSDLQARLAKAEAQLKSRDKEVHSLQKRLRTSQGALREMETKFLSDLSRLFK-SVQSQEDVGERVKWERELGLALAEVRRLREELGCRSSAR---KEERQKHNDTRITATISKTTNPLGGGKRKSEKGXXXXXXXXWNRLQEKVLRQAERIHADKKLIRRLKKERGXXXXXXXERIEELLASREAQKGLTAELAVSAQRHEEDLEYELQKGV 375
            S S PS P  +    G P     + P QF++AM+LVQRLQ QLKTVRLDK RL+ERCF LE+EV +  +H   S       L  P+   P T     +    EN P      LE   A+E  ++  L+ARL   EAQL SRDKEV SLQKRL  +  AL   E+K L DLSRLF+ S ++ E+ GER KW+RE+ LAL E  R R E+  R + R   +E      +     T+ K T    G KR   +G           LQE++ +QA  + ++K+ +R L+           +  E L+ASR A   L  ELA  A R  E LE +L+  V
Sbjct:   20 SHSRPSSPYNASYVAGKPELHLNEGPPQFKSAMELVQRLQEQLKTVRLDKGRLEERCFALEQEVGEISQHLLASKPVRTNKL-SPSFGSP-TFAGSAYHPKIENGP-----YLENPSAKEWASKDSLRARLVSVEAQLASRDKEVLSLQKRLDKALRALAAAESKHLEDLSRLFRGSARTGENNGERAKWKREVKLALREAVRWRCEVE-RVTGRAGGEEGGADEGEGGGAPTVLKVTGL--GVKRARREGKRVTP-----ALQERIAKQAGAMESEKREVRALEARLERALRQKEKYKERLVASRGAALALKQELASLAGR-PEVLEDDLRGSV 338
The following BLAST results are available for this feature:
BLAST of NO23G00700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22967.11.200e-2639.40hypothetical protein Naga_100102g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006317NSK006317Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00700.1NO23G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568446gene_8418Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00700.1NO23G00700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00700 ID=NO23G00700|Name=NO23G00700|organism=Nannochloropsis oceanica|type=gene|length=1789bp
CTCCTTCATCCAAAATCAAACAGCACACAAGCCCGCATGGCCTTGTTATA
CCAATCCCCTGCATCGGGCTCGTCCTCCTCCTTTGCCGTCGAACAACAAC
AGGACAACTATGATTGGCATTCTTCGAGCCATGTCGGCAGTGGTCATTCA
GACGCGGATATGTTTGTGTCGTCCTCTGAGCCCTCCCCGCCACGCTCTCA
CCTAGATGGAGGCGATCCGCTCGGCTCCCAATATAAGTCTCCGATGCAAT
TTCAGAACGCAATGGATTTGGTACAGCGCTTGCAAGCTCAGCTCAAGACG
GTCCGATTAGATAAAGACCGCCTCAAGGAACGATGCTTCTTGTTGGAACG
GGAAGTGAAAGACAACCTGCGGCATCACTACCCTTCCTCCACGTCCTATG
CCCCACCTTTGCCGATGCCCGCCATCTCTCCTCCTTCAACCACCACCGCT
CATAAATTTGGTTGGCCGTACGAAAACTATCCCCTTCACAAATATCAGAT
ACTGGAAAAAACTTTAGCCGAAGAACGGGTAACCCGCAGTGACTTACAAG
CTCGCCTTGCGAAGGCGGAAGCTCAGCTCAAAAGCCGCGACAAGGAGGTG
CATTCCCTACAAAAGCGGTTACGCACTTCCCAAGGAGCATTACGAGAGAT
GGAAACCAAGTTTCTGTCTGACTTGTCAAGGTTATTTAAGTCGGTCCAAT
CACAGGAGGATGTGGGCGAGAGGGTCAAGTGGGAGAGAGAGTTGGGGTTG
GCATTGGCAGAGGTGAGGAGGCTGAGAGAGGAATTAGGTTGTCGAAGCTC
AGCGCGGAAGGAAGAGCGGCAGAAGCACAATGATACAAGAATAACGGCTA
CGATCAGCAAGACAACAAATCCGTTGGGAGGAGGGAAGAGGAAGAGCGAG
AAAGGCAGAAGGCGGGAGCAGGAGAAGGAATGGAACCGCCTCCAAGAAAA
GGTATTGAGACAAGCTGAAAGAATACATGCCGATAAGAAGCTGATCAGAC
GCTTGAAAAAGGAAAGAGGACGTGCCGAAGAAGAGGAAGGAGAGAGAATA
GAGGAGCTGCTGGCGTCAAGAGAGGCACAGAAGGGCTTGACAGCAGAGCT
GGCTGTCTCGGCACAGCGGCATGAGGAGGATCTGGAGTACGAATTACAAA
AGGGAGTTGAAACGACTAGAGCCGTTCGAGTGCTGGAGGAGGAGACGGAG
AAGGAGAGGAAGGGAGAAGGGTTGGGGGACGGGTGGGTACTGGTGAATGT
GGAACGAGAGGGGGAGGAAGATTTCCGGTGGCGATGCAATAAGGAGAAGA
ATAAGAAAGGGGAGAGTGCTGGCCAGAAAGAGAAAGAGGTAGCTTCGTAT
CACCATCACCGACACCGTCACCATCATCATAATGATCGCCAGGAGGAGGA
AGAAGAGAAACAGCGAGACGCACCAAACCAGCTCTACAGCCACCACCATC
GTGATCACCACCAGCAATGGGACCACCACCACCTGCAGCAGCAGCAGTCG
TCGTCTCAGGTCCGCAGAAAGAGCAGGACAAACGCAGGGAAGATCCGGAC
GTCTGCCAGGTCAACGCCGCCACGGACCAAGCCGCAGGCCTGGGAGATCA
ATTTCCCTCCGGGCAAGAAAGAGTATGAGGTGTCGCCCCTTAATCACCGG
TTTGAGACGCTCGATGATGGGAAATAAGTAAGTCGCTAAACAACACACAC
AGACTGATGAAATTTGAAGGAGAAAGCTTTCATGGGACCGGACATTCGTA
AATTTAAATACGAAGAAAAGTGCAAAACAACACCGACAA
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protein sequence of NO23G00700.1

>NO23G00700.1-protein ID=NO23G00700.1-protein|Name=NO23G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MALLYQSPASGSSSSFAVEQQQDNYDWHSSSHVGSGHSDADMFVSSSEPS
PPRSHLDGGDPLGSQYKSPMQFQNAMDLVQRLQAQLKTVRLDKDRLKERC
FLLEREVKDNLRHHYPSSTSYAPPLPMPAISPPSTTTAHKFGWPYENYPL
HKYQILEKTLAEERVTRSDLQARLAKAEAQLKSRDKEVHSLQKRLRTSQG
ALREMETKFLSDLSRLFKSVQSQEDVGERVKWERELGLALAEVRRLREEL
GCRSSARKEERQKHNDTRITATISKTTNPLGGGKRKSEKGRRREQEKEWN
RLQEKVLRQAERIHADKKLIRRLKKERGRAEEEEGERIEELLASREAQKG
LTAELAVSAQRHEEDLEYELQKGVETTRAVRVLEEETEKERKGEGLGDGW
VLVNVEREGEEDFRWRCNKEKNKKGESAGQKEKEVASYHHHRHRHHHHND
RQEEEEEKQRDAPNQLYSHHHRDHHQQWDHHHLQQQQSSSQVRRKSRTNA
GKIRTSARSTPPRTKPQAWEINFPPGKKEYEVSPLNHRFETLDDGK*
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Synonyms
Publications