NO23G00700.1, NO23G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00700.1
Unique NameNO23G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1789
Alignment locationchr23:264358..266146 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:264358..266146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00700.1 vs.
Match: EWM22967.1 (hypothetical protein Naga_100102g7 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 4.300e-29
Identity = 178/508 (35.04%), Postives = 244/508 (48.03%), Query Frame = 0 
Query:   45 SSSEPSPP-RSHLDGGDPLGSQYKSPMQFQNAMDLVQRLQAQLKTVRLDKDRLKERCFLLEREVKDNLRHHYPSSTSYAPPLPMPAISPPSTTTAHKFGWPYENYPLHKYQILEKTLAEERVTRSDLQARLAKAEAQLKSRDKEVHSLQKRLRTSQGALREMETKFLSDLSRLFK-SVQSQEDVGERVKWERELGLALAEVRRLREELGCRSSAR---KEERQKHNDTRITATISKTTNPLGGGKRKSEKGRRREQEKEWNRLQEKVLRQAERIHADKKLIRRLKKERGRAEEEEGERIEELLASREAQKGLTAELAVSAQRHEEDLEYELQKGVETTRAVRVLEEETEKERKG---EGLGDGWVLVNVEREGE----EDFRWRCNKEKNKKGESAGQKEKEVASYHHHRHRHHHHNDRQEEEEEKQRDAPNQLYSHHHRDHHQQWDHHHLQQQQSSSQVRRKSRTNAGKIRTSARSTPPRTKPQAWEINFPPGKKEYEVSPLNHRFE 541
            S S PS P  +    G P     + P QF++AM+LVQRLQ QLKTVRLDK RL+ERCF LE+EV +  +H   S       L  P+   P T     +    EN P      LE   A+E  ++  L+ARL   EAQL SRDKEV SLQKRL  +  AL   E+K L DLSRLF+ S ++ E+ GER KW+RE+ LAL E  R R E+  R + R   +E      +     T+ K T   G G +++    RRE ++    LQE++ +QA  + ++K+ +R L+    RA  ++ +  E L+ASR A   L  ELA  A R E                  VLE++      G    G G G  L   ER       E   W   K  N+ G   G+ ++   S      +  H+  R       + DA NQ       +   Q D     +++     R++     G        TP   KPQAWEINFPPG+  +E+SP+ HRF+
Sbjct:   20 SHSRPSSPYNASYVAGKPELHLNEGPPQFKSAMELVQRLQEQLKTVRLDKGRLEERCFALEQEVGEISQHLLASKPVRTNKL-SPSFGSP-TFAGSAYHPKIENGP-----YLENPSAKEWASKDSLRARLVSVEAQLASRDKEVLSLQKRLDKALRALAAAESKHLEDLSRLFRGSARTGENNGERAKWKREVKLALREAVRWRCEVE-RVTGRAGGEEGGADEGEGGGAPTVLKVT---GLGVKRA----RREGKRVTPALQERIAKQAGAMESEKREVRALEARLERALRQKEKYKERLVASRGAALALKQELASLAGRPE------------------VLEDDLRGSVGGAPTRGQGGGACLAGGERAFHGGRGEGGEWDGGKGGNRVGGKQGRGQEGRESGRISETQQLHNRRRGGRLLRAEADAENQ-----DANGESQRDLDACSRRRQKKPHRKRQDPPVGNTE-PIPLTPLAIKPQAWEINFPPGQAGFEISPVLHRFQ 488
The following BLAST results are available for this feature:
BLAST of NO23G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22967.14.300e-2935.04hypothetical protein Naga_100102g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00700NO23G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00700.1NO23G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00700.1.cds1NO23G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00700.1 ID=NO23G00700.1|Name=NO23G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp
CTCCTTCATCCAAAATCAAACAGCACACAAGCCCGCATGGCCTTGTTATA
CCAATCCCCTGCATCGGGCTCGTCCTCCTCCTTTGCCGTCGAACAACAAC
AGGACAACTATGATTGGCATTCTTCGAGCCATGTCGGCAGTGGTCATTCA
GACGCGGATATGTTTGTGTCGTCCTCTGAGCCCTCCCCGCCACGCTCTCA
CCTAGATGGAGGCGATCCGCTCGGCTCCCAATATAAGTCTCCGATGCAAT
TTCAGAACGCAATGGATTTGGTACAGCGCTTGCAAGCTCAGCTCAAGACG
GTCCGATTAGATAAAGACCGCCTCAAGGAACGATGCTTCTTGTTGGAACG
GGAAGTGAAAGACAACCTGCGGCATCACTACCCTTCCTCCACGTCCTATG
CCCCACCTTTGCCGATGCCCGCCATCTCTCCTCCTTCAACCACCACCGCT
CATAAATTTGGTTGGCCGTACGAAAACTATCCCCTTCACAAATATCAGAT
ACTGGAAAAAACTTTAGCCGAAGAACGGGTAACCCGCAGTGACTTACAAG
CTCGCCTTGCGAAGGCGGAAGCTCAGCTCAAAAGCCGCGACAAGGAGGTG
CATTCCCTACAAAAGCGGTTACGCACTTCCCAAGGAGCATTACGAGAGAT
GGAAACCAAGTTTCTGTCTGACTTGTCAAGGTTATTTAAGTCGGTCCAAT
CACAGGAGGATGTGGGCGAGAGGGTCAAGTGGGAGAGAGAGTTGGGGTTG
GCATTGGCAGAGGTGAGGAGGCTGAGAGAGGAATTAGGTTGTCGAAGCTC
AGCGCGGAAGGAAGAGCGGCAGAAGCACAATGATACAAGAATAACGGCTA
CGATCAGCAAGACAACAAATCCGTTGGGAGGAGGGAAGAGGAAGAGCGAG
AAAGGCAGAAGGCGGGAGCAGGAGAAGGAATGGAACCGCCTCCAAGAAAA
GGTATTGAGACAAGCTGAAAGAATACATGCCGATAAGAAGCTGATCAGAC
GCTTGAAAAAGGAAAGAGGACGTGCCGAAGAAGAGGAAGGAGAGAGAATA
GAGGAGCTGCTGGCGTCAAGAGAGGCACAGAAGGGCTTGACAGCAGAGCT
GGCTGTCTCGGCACAGCGGCATGAGGAGGATCTGGAGTACGAATTACAAA
AGGGAGTTGAAACGACTAGAGCCGTTCGAGTGCTGGAGGAGGAGACGGAG
AAGGAGAGGAAGGGAGAAGGGTTGGGGGACGGGTGGGTACTGGTGAATGT
GGAACGAGAGGGGGAGGAAGATTTCCGGTGGCGATGCAATAAGGAGAAGA
ATAAGAAAGGGGAGAGTGCTGGCCAGAAAGAGAAAGAGGTAGCTTCGTAT
CACCATCACCGACACCGTCACCATCATCATAATGATCGCCAGGAGGAGGA
AGAAGAGAAACAGCGAGACGCACCAAACCAGCTCTACAGCCACCACCATC
GTGATCACCACCAGCAATGGGACCACCACCACCTGCAGCAGCAGCAGTCG
TCGTCTCAGGTCCGCAGAAAGAGCAGGACAAACGCAGGGAAGATCCGGAC
GTCTGCCAGGTCAACGCCGCCACGGACCAAGCCGCAGGCCTGGGAGATCA
ATTTCCCTCCGGGCAAGAAAGAGTATGAGGTGTCGCCCCTTAATCACCGG
TTTGAGACGCTCGATGATGGGAAATAAGTAAGTCGCTAAACAACACACAC
AGACTGATGAAATTTGAAGGAGAAAGCTTTCATGGGACCGGACATTCGTA
AATTTAAATACGAAGAAAAGTGCAAAACAACACCGACAA
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protein sequence of NO23G00700.1

>NO23G00700.1-protein ID=NO23G00700.1-protein|Name=NO23G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MALLYQSPASGSSSSFAVEQQQDNYDWHSSSHVGSGHSDADMFVSSSEPS
PPRSHLDGGDPLGSQYKSPMQFQNAMDLVQRLQAQLKTVRLDKDRLKERC
FLLEREVKDNLRHHYPSSTSYAPPLPMPAISPPSTTTAHKFGWPYENYPL
HKYQILEKTLAEERVTRSDLQARLAKAEAQLKSRDKEVHSLQKRLRTSQG
ALREMETKFLSDLSRLFKSVQSQEDVGERVKWERELGLALAEVRRLREEL
GCRSSARKEERQKHNDTRITATISKTTNPLGGGKRKSEKGRRREQEKEWN
RLQEKVLRQAERIHADKKLIRRLKKERGRAEEEEGERIEELLASREAQKG
LTAELAVSAQRHEEDLEYELQKGVETTRAVRVLEEETEKERKGEGLGDGW
VLVNVEREGEEDFRWRCNKEKNKKGESAGQKEKEVASYHHHRHRHHHHND
RQEEEEEKQRDAPNQLYSHHHRDHHQQWDHHHLQQQQSSSQVRRKSRTNA
GKIRTSARSTPPRTKPQAWEINFPPGKKEYEVSPLNHRFETLDDGK*
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mRNA from alignment at chr23:264358..266146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00700.1 ID=NO23G00700.1|Name=NO23G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp|location=Sequence derived from alignment at chr23:264358..266146- (Nannochloropsis oceanica)
CTCCTTCATCCAAAATCAAACAGCACACAAGCCCGCATGGCCTTGTTATA
CCAATCCCCTGCATCGGGCTCGTCCTCCTCCTTTGCCGTCGAACAACAAC
AGGACAACTATGATTGGCATTCTTCGAGCCATGTCGGCAGTGGTCATTCA
GACGCGGATATGTTTGTGTCGTCCTCTGAGCCCTCCCCGCCACGCTCTCA
CCTAGATGGAGGCGATCCGCTCGGCTCCCAATATAAGTCTCCGATGCAAT
TTCAGAACGCAATGGATTTGGTACAGCGCTTGCAAGCTCAGCTCAAGACG
GTCCGATTAGATAAAGACCGCCTCAAGGAACGATGCTTCTTGTTGGAACG
GGAAGTGAAAGACAACCTGCGGCATCACTACCCTTCCTCCACGTCCTATG
CCCCACCTTTGCCGATGCCCGCCATCTCTCCTCCTTCAACCACCACCGCT
CATAAATTTGGTTGGCCGTACGAAAACTATCCCCTTCACAAATATCAGAT
ACTGGAAAAAACTTTAGCCGAAGAACGGGTAACCCGCAGTGACTTACAAG
CTCGCCTTGCGAAGGCGGAAGCTCAGCTCAAAAGCCGCGACAAGGAGGTG
CATTCCCTACAAAAGCGGTTACGCACTTCCCAAGGAGCATTACGAGAGAT
GGAAACCAAGTTTCTGTCTGACTTGTCAAGGTTATTTAAGTCGGTCCAAT
CACAGGAGGATGTGGGCGAGAGGGTCAAGTGGGAGAGAGAGTTGGGGTTG
GCATTGGCAGAGGTGAGGAGGCTGAGAGAGGAATTAGGTTGTCGAAGCTC
AGCGCGGAAGGAAGAGCGGCAGAAGCACAATGATACAAGAATAACGGCTA
CGATCAGCAAGACAACAAATCCGTTGGGAGGAGGGAAGAGGAAGAGCGAG
AAAGGCAGAAGGCGGGAGCAGGAGAAGGAATGGAACCGCCTCCAAGAAAA
GGTATTGAGACAAGCTGAAAGAATACATGCCGATAAGAAGCTGATCAGAC
GCTTGAAAAAGGAAAGAGGACGTGCCGAAGAAGAGGAAGGAGAGAGAATA
GAGGAGCTGCTGGCGTCAAGAGAGGCACAGAAGGGCTTGACAGCAGAGCT
GGCTGTCTCGGCACAGCGGCATGAGGAGGATCTGGAGTACGAATTACAAA
AGGGAGTTGAAACGACTAGAGCCGTTCGAGTGCTGGAGGAGGAGACGGAG
AAGGAGAGGAAGGGAGAAGGGTTGGGGGACGGGTGGGTACTGGTGAATGT
GGAACGAGAGGGGGAGGAAGATTTCCGGTGGCGATGCAATAAGGAGAAGA
ATAAGAAAGGGGAGAGTGCTGGCCAGAAAGAGAAAGAGGTAGCTTCGTAT
CACCATCACCGACACCGTCACCATCATCATAATGATCGCCAGGAGGAGGA
AGAAGAGAAACAGCGAGACGCACCAAACCAGCTCTACAGCCACCACCATC
GTGATCACCACCAGCAATGGGACCACCACCACCTGCAGCAGCAGCAGTCG
TCGTCTCAGGTCCGCAGAAAGAGCAGGACAAACGCAGGGAAGATCCGGAC
GTCTGCCAGGTCAACGCCGCCACGGACCAAGCCGCAGGCCTGGGAGATCA
ATTTCCCTCCGGGCAAGAAAGAGTATGAGGTGTCGCCCCTTAATCACCGG
TTTGAGACGCTCGATGATGGGAAATAAGTAAGTCGCTAAACAACACACAC
AGACTGATGAAATTTGAAGGAGAAAGCTTTCATGGGACCGGACATTCGTA
AATTTAAATACGAAGAAAAGTGCAAAACAACACCGACAA
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Coding sequence (CDS) from alignment at chr23:264358..266146-

>NO23G00700.1 ID=NO23G00700.1|Name=NO23G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=1641bp|location=Sequence derived from alignment at chr23:264358..266146- (Nannochloropsis oceanica)
ATGGCCTTGTTATACCAATCCCCTGCATCGGGCTCGTCCTCCTCCTTTGC
CGTCGAACAACAACAGGACAACTATGATTGGCATTCTTCGAGCCATGTCG
GCAGTGGTCATTCAGACGCGGATATGTTTGTGTCGTCCTCTGAGCCCTCC
CCGCCACGCTCTCACCTAGATGGAGGCGATCCGCTCGGCTCCCAATATAA
GTCTCCGATGCAATTTCAGAACGCAATGGATTTGGTACAGCGCTTGCAAG
CTCAGCTCAAGACGGTCCGATTAGATAAAGACCGCCTCAAGGAACGATGC
TTCTTGTTGGAACGGGAAGTGAAAGACAACCTGCGGCATCACTACCCTTC
CTCCACGTCCTATGCCCCACCTTTGCCGATGCCCGCCATCTCTCCTCCTT
CAACCACCACCGCTCATAAATTTGGTTGGCCGTACGAAAACTATCCCCTT
CACAAATATCAGATACTGGAAAAAACTTTAGCCGAAGAACGGGTAACCCG
CAGTGACTTACAAGCTCGCCTTGCGAAGGCGGAAGCTCAGCTCAAAAGCC
GCGACAAGGAGGTGCATTCCCTACAAAAGCGGTTACGCACTTCCCAAGGA
GCATTACGAGAGATGGAAACCAAGTTTCTGTCTGACTTGTCAAGGTTATT
TAAGTCGGTCCAATCACAGGAGGATGTGGGCGAGAGGGTCAAGTGGGAGA
GAGAGTTGGGGTTGGCATTGGCAGAGGTGAGGAGGCTGAGAGAGGAATTA
GGTTGTCGAAGCTCAGCGCGGAAGGAAGAGCGGCAGAAGCACAATGATAC
AAGAATAACGGCTACGATCAGCAAGACAACAAATCCGTTGGGAGGAGGGA
AGAGGAAGAGCGAGAAAGGCAGAAGGCGGGAGCAGGAGAAGGAATGGAAC
CGCCTCCAAGAAAAGGTATTGAGACAAGCTGAAAGAATACATGCCGATAA
GAAGCTGATCAGACGCTTGAAAAAGGAAAGAGGACGTGCCGAAGAAGAGG
AAGGAGAGAGAATAGAGGAGCTGCTGGCGTCAAGAGAGGCACAGAAGGGC
TTGACAGCAGAGCTGGCTGTCTCGGCACAGCGGCATGAGGAGGATCTGGA
GTACGAATTACAAAAGGGAGTTGAAACGACTAGAGCCGTTCGAGTGCTGG
AGGAGGAGACGGAGAAGGAGAGGAAGGGAGAAGGGTTGGGGGACGGGTGG
GTACTGGTGAATGTGGAACGAGAGGGGGAGGAAGATTTCCGGTGGCGATG
CAATAAGGAGAAGAATAAGAAAGGGGAGAGTGCTGGCCAGAAAGAGAAAG
AGGTAGCTTCGTATCACCATCACCGACACCGTCACCATCATCATAATGAT
CGCCAGGAGGAGGAAGAAGAGAAACAGCGAGACGCACCAAACCAGCTCTA
CAGCCACCACCATCGTGATCACCACCAGCAATGGGACCACCACCACCTGC
AGCAGCAGCAGTCGTCGTCTCAGGTCCGCAGAAAGAGCAGGACAAACGCA
GGGAAGATCCGGACGTCTGCCAGGTCAACGCCGCCACGGACCAAGCCGCA
GGCCTGGGAGATCAATTTCCCTCCGGGCAAGAAAGAGTATGAGGTGTCGC
CCCTTAATCACCGGTTTGAGACGCTCGATGATGGGAAATAA
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Synonyms
Publications