NO23G00680, NO23G00680 (gene) Nannochloropsis oceanica

Overview
NameNO23G00680
Unique NameNO23G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1303
Alignment locationchr23:262308..263610 -

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Properties
Property NameValue
DescriptionGlutaredoxin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:262308..263610 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR004480Monothiol_GRX-rel
IPR002109Glutaredoxin
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO23G00680 vs. NCBI_GenBank
Match: EWM22957.1 (glutaredoxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 236.5 bits (602), Expect = 7.200e-59
Identity = 116/128 (90.62%), Postives = 121/128 (94.53%), Query Frame = 0 
Query:   70 DDFKPQKTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEETLNQQKEAQKSGE 198
            DDFKPQ+++PPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFV GEFVGGCDIMTSLFQSGELAQILEE+  +Q   QK GE
Sbjct:   31 DDFKPQRSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQ---QKEGE 155
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BLAST of NO23G00680 vs. NCBI_GenBank
Match: XP_005853615.1 (glutaredoxin-like protein [Nannochloropsis gaditana CCMP526] >EKU22741.1 glutaredoxin-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 231.5 bits (589), Expect = 2.300e-57
Identity = 131/202 (64.85%), Postives = 146/202 (72.28%), Query Frame = 0 
Query:    1 MPAVSITTRFLLR-----VSTGVASKPLASLRRLTTTGLCRRPNTLPHSSPSLYPTAAASRAFSAPPSGKNDSHDDFKPQKTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEETLNQQKEAQKSGE 198
            M A+S ++R  +R     V+   AS P A+ R+L+ + + R       S  S                      DDFKPQ+++PPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFV GEFVGGCDIMTSLFQSGELAQILEE+  +Q   QK GE
Sbjct:    1 MQALSASSRGFMRATRRFVAKAPASAPCATSRQLSASCMLRL------SPASNLAXXXXXXXXXXXXXXXXXXXDDFKPQRSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQ---QKEGE 193
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BLAST of NO23G00680 vs. NCBI_GenBank
Match: XP_008890754.1 (Grx4 family monothiol glutaredoxin [Phytophthora parasitica INRA-310] >ETI56345.1 Grx4 family monothiol glutaredoxin [Phytophthora parasitica P1569] >ETK96118.1 Grx4 family monothiol glutaredoxin [Phytophthora parasitica] >ETL49494.1 Grx4 family monothiol glutaredoxin [Phytophthora parasitica] >ETM02568.1 Grx4 family monothiol glutaredoxin [Phytophthora parasitica] >ETM55798.1 Grx4 family monothiol glutaredoxin [Phytophthora parasitica] >ETN24711.1 Grx4 family monothiol glutaredoxin [Phytophthora parasitica INRA-310] >ETO85074.1 Grx4 family monothiol glutaredoxin [Phytophthora parasitica P1976] >ETP26126.1 Grx4 family monothiol glutaredoxin [Phytophthora parasitica CJ01A1] >ETP54123.1 Grx4 family monothiol glutaredoxin [Phytophthora parasitica P10297])

HSP 1 Score: 169.9 bits (429), Expect = 8.300e-39
Identity = 84/138 (60.87%), Postives = 104/138 (75.36%), Query Frame = 0 
Query:   48 LYPTAAASRAFSAPPSGKNDSHDDFKPQ-KTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEE 185
            ++ +A  SR FSA     +DSH DF+PQ   A   + D  +KMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E
Sbjct:   32 VFVSAHQSRFFSA--KSGDDSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMNKSGELAELLAE 167
[Close]
BLAST of NO23G00680 vs. NCBI_GenBank
Match: KUF79824.1 (Monothiol glutaredoxin-5 [Phytophthora nicotianae] >KUF85347.1 Monothiol glutaredoxin-5 [Phytophthora nicotianae])

HSP 1 Score: 169.9 bits (429), Expect = 8.300e-39
Identity = 84/138 (60.87%), Postives = 104/138 (75.36%), Query Frame = 0 
Query:   48 LYPTAAASRAFSAPPSGKNDSHDDFKPQ-KTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEE 185
            ++ +A  SR FSA     +DSH DF+PQ   A   + D  +KMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E
Sbjct:   30 VFVSAHQSRFFSA--KSGDDSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMNKSGELAELLAE 165
[Close]
BLAST of NO23G00680 vs. NCBI_GenBank
Match: KUF98661.1 (cGMP-gated cation channel alpha-1 [Phytophthora nicotianae])

HSP 1 Score: 169.9 bits (429), Expect = 8.300e-39
Identity = 84/138 (60.87%), Postives = 104/138 (75.36%), Query Frame = 0 
Query:   48 LYPTAAASRAFSAPPSGKNDSHDDFKPQ-KTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEE 185
            ++ +A  SR FSA     +DSH DF+PQ   A   + D  +KMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E
Sbjct:    8 VFVSAHQSRFFSA--KSGDDSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMNKSGELAELLAE 143
[Close]
BLAST of NO23G00680 vs. NCBI_GenBank
Match: XP_002908382.1 (monothiol glutaredoxin-5, mitochondrial precursor [Phytophthora infestans T30-4] >EEY61465.1 monothiol glutaredoxin-5, mitochondrial precursor [Phytophthora infestans T30-4])

HSP 1 Score: 169.5 bits (428), Expect = 1.100e-38
Identity = 84/135 (62.22%), Postives = 102/135 (75.56%), Query Frame = 0 
Query:   51 TAAASRAFSAPPSGKNDSHDDFKPQ-KTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEE 185
            +A   R FSA     +DSH DF+PQ   A   + D  IKMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGEL+++LEE
Sbjct:   35 SAQQPRFFSA--KSGDDSHSDFQPQYHAAKSTEKDEIIKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMNKSGELSELLEE 167
[Close]
BLAST of NO23G00680 vs. NCBI_GenBank
Match: OWZ03629.1 (Grx4 family monothiol glutaredoxin [Phytophthora megakarya])

HSP 1 Score: 169.5 bits (428), Expect = 1.100e-38
Identity = 84/134 (62.69%), Postives = 101/134 (75.37%), Query Frame = 0 
Query:   52 AAASRAFSAPPSGKNDSHDDFKPQ-KTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEE 185
            AA  R FSA     +DSH DF+PQ   A   + D  +KMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E
Sbjct:   31 AAQPRFFSA--KSGDDSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMSKSGELAELLAE 162
[Close]
BLAST of NO23G00680 vs. NCBI_GenBank
Match: XP_009523710.1 (hypothetical protein PHYSODRAFT_285540 [Phytophthora sojae] >EGZ20993.1 hypothetical protein PHYSODRAFT_285540 [Phytophthora sojae])

HSP 1 Score: 169.1 bits (427), Expect = 1.400e-38
Identity = 87/144 (60.42%), Postives = 104/144 (72.22%), Query Frame = 0 
Query:   42 PHSSPSLYPTAAASRAFSAPPSGKNDSHDDFKPQ-KTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEE 185
            P  +  L   A   R FSA  SG + SH DF+PQ   A   + D  +KMI   VK + IMLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E
Sbjct:   26 PAVASQLQLLAQQPRFFSA-KSGDDGSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPIMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVKGEFVGGCDIITDMSKSGELAELLAE 168
[Close]
BLAST of NO23G00680 vs. NCBI_GenBank
Match: POM71877.1 (Grx4 family monothiol glutaredoxin [Phytophthora palmivora var. palmivora])

HSP 1 Score: 168.7 bits (426), Expect = 1.800e-38
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 0 
Query:   55 SRAFSAPPSGKNDSHDDFKPQ-KTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEE 185
            SR FSA     +DSH DF+PQ   A   + D  +KMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E
Sbjct:   36 SRLFSA--KSGDDSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMNKSGELAELLAE 164
[Close]
BLAST of NO23G00680 vs. NCBI_GenBank
Match: OQR84641.1 (monothiol glutaredoxin-5, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 166.4 bits (420), Expect = 9.100e-38
Identity = 77/122 (63.11%), Postives = 97/122 (79.51%), Query Frame = 0 
Query:   66 NDSHDDFKPQ-KTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEETL 187
            ++SHDDFKP+   A  A+ D  +K+I   V  + IMLYMKGTP+ PQCGFS Q V+ILHA G+ FDSVNVLD+P IREGVK++S+WPT+PQLFV GEFVGGCDI+T + +SGELA++LE  L
Sbjct:   26 SESHDDFKPKYHAAASAEPDDVLKLIQSHVDTYPIMLYMKGTPSSPQCGFSRQVVQILHAQGISFDSVNVLDHPEIREGVKEFSQWPTIPQLFVKGEFVGGCDIITDMHKSGELAELLEPFL 147
The following BLAST results are available for this feature:
BLAST of NO23G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22957.17.200e-5990.63glutaredoxin-like protein [Nannochloropsis gaditan... [more]
XP_005853615.12.300e-5764.85glutaredoxin-like protein [Nannochloropsis gaditan... [more]
XP_008890754.18.300e-3960.87Grx4 family monothiol glutaredoxin [Phytophthora p... [more]
KUF79824.18.300e-3960.87Monothiol glutaredoxin-5 [Phytophthora nicotianae]... [more]
KUF98661.18.300e-3960.87cGMP-gated cation channel alpha-1 [Phytophthora ni... [more]
XP_002908382.11.100e-3862.22monothiol glutaredoxin-5, mitochondrial precursor ... [more]
OWZ03629.11.100e-3862.69Grx4 family monothiol glutaredoxin [Phytophthora m... [more]
XP_009523710.11.400e-3860.42hypothetical protein PHYSODRAFT_285540 [Phytophtho... [more]
POM71877.11.800e-3863.36Grx4 family monothiol glutaredoxin [Phytophthora p... [more]
OQR84641.19.100e-3863.11monothiol glutaredoxin-5, mitochondrial precursor ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006315NSK006315Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00680.1NO23G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601939gene_8416Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100102g5gene7481Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00680.1NO23G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00680 ID=NO23G00680|Name=NO23G00680|organism=Nannochloropsis oceanica|type=gene|length=1303bp
TATGATAGGTGATGAGTTCAATGACGTGATAAGGGAGCGCTCGGTCGAGG
TCCTCGGCGGTGGGAAGAGGATAAGCATACGCAGACGCCGCGCCTCCTGG
CGAGTGGCAAATCCTTGCACCCCCACCTCTGTCGATCCCTTGTAGCACAT
ATGTGAAACCACGCATTCAAAACTCAATCCTCTCACGTGGGCTCTATAAC
ACAGAACTACAGTCATGCCAGCTGTCAGCATCACCACCCGGTTCTTGTTG
CGCGTCTCCACAGGGGTCGCGTCCAAGgtaagataagggcgtcgaaggag
atgggcaacaaccgacggagcagcaatagcatcgtgcccgtgcatcacat
tgactcatgcctgccggtctacatacccaatccacagCCTCTCGCATCCC
TTCGACGACTTACGACCACTGGTCTTTGTCGCCGGCCCAATACCCTGCCA
CACTCGTCTCCCTCCCTTTACCCTACCGCCGCCGCCAGCCGTGCCTTCTC
AGCCCCGCCCTCCGGCAAGAATGACTCTCACGATGATTTTAAGCCGCAAA
AGACTGCCCCACCCGCAGATCTTGACGGGGCCATTAAGATGATTGCGGAA
CAGGTGAAGAAGCATCAGATCATGCTGTACATGAAGGGCACGCCTGCCCG
GCCGCAGTGTGGCTTCTCGGCACAGGCCGTGCGGATTCTGCATGCTTCAG
GGGTGGACTTCGATTCGGTGAATGTGTTGGACTACCCCATGATCAGGGAG
GGTGTCAAAAAGTACTCgtaagtctaattggaagaaggtcgggaggaagg
ggatggggaggggacatgatcttgcgtttcttatgcgtcgctccttccat
tcctcttccccgttcctcgtctctcactcttcttcctttcctccttcctc
ttcatcatcacttcaccaattttcaagGGAGTGGCCCACGGTACCTCAGC
TCTTCGTGGCTGGGGAGTTTGTGGGCGGGTGCGATATAATGACATCACTT
TTTCAGTCGGGGGAACTGGCTCAAATCTTGGAGGAGACGCTTAATCAGCA
GAAGGAGGCGCAAAAGAGTGGGGAGGGGAAGGCATGAGCAGAGAGAAGCA
GGGGAAATGGTTTGAAGCAGAAGGTGTACGTAAGAGGGATTGGGGGAGAG
CGGGAAGATGATAGGAGGAGGGAAAGAGAGGAGGAGAAAGGAATGAAAAT
TTTGAACGGAAAGATTACGGAAGGGAAAGAAAAAGGAACACCTTATTTTC
GACCCGAAGCGATTTAAAGACTGTATATTCGCCGTCAAAGGGACTGTCCC
GCA
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protein sequence of NO23G00680.1

>NO23G00680.1-protein ID=NO23G00680.1-protein|Name=NO23G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MPAVSITTRFLLRVSTGVASKPLASLRRLTTTGLCRRPNTLPHSSPSLYP
TAAASRAFSAPPSGKNDSHDDFKPQKTAPPADLDGAIKMIAEQVKKHQIM
LYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEW
PTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEETLNQQKEAQKSGEGKA
*
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Synonyms
Publications