NO23G00680.1, NO23G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00680.1
Unique NameNO23G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1033
Alignment locationchr23:262308..263610 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:262308..263610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00680.1 vs.
Match: XP_005853615.1 (glutaredoxin-like protein [Nannochloropsis gaditana CCMP526]; EKU22741.1 glutaredoxin-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 260.4 bits (664), Expect = 4.700e-66
Identity = 143/203 (70.44%), Postives = 161/203 (79.31%), Query Frame = 0 
Query:    1 MPAVSITTRFLLR-----VSTGVASKPLASLRRLTTTGLCRRPNTLPHSSPSLYPTAAASRAF-SAPPSGKNDSHDDFKPQKTAPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEETLNQQKEAQKSGE 198
            M A+S ++R  +R     V+   AS P A+ R+L+ + + R        SP+    AAA R+F S+PP G  DSHDDFKPQ+++PPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFV GEFVGGCDIMTSLFQSGELAQILEE+  +Q   QK GE
Sbjct:    1 MQALSASSRGFMRATRRFVAKAPASAPCATSRQLSASCMLRL-------SPASNLAAAARRSFASSPPPGNEDSHDDFKPQRSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQ---QKEGE 193
The following BLAST results are available for this feature:
BLAST of NO23G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853615.14.700e-6670.44glutaredoxin-like protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00680NO23G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00680.1NO23G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00680.1.cds1NO23G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00680.1.cds2NO23G00680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00680.1.cds3NO23G00680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00680.1 ID=NO23G00680.1|Name=NO23G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp
TATGATAGGTGATGAGTTCAATGACGTGATAAGGGAGCGCTCGGTCGAGG
TCCTCGGCGGTGGGAAGAGGATAAGCATACGCAGACGCCGCGCCTCCTGG
CGAGTGGCAAATCCTTGCACCCCCACCTCTGTCGATCCCTTGTAGCACAT
ATGTGAAACCACGCATTCAAAACTCAATCCTCTCACGTGGGCTCTATAAC
ACAGAACTACAGTCATGCCAGCTGTCAGCATCACCACCCGGTTCTTGTTG
CGCGTCTCCACAGGGGTCGCGTCCAAGCCTCTCGCATCCCTTCGACGACT
TACGACCACTGGTCTTTGTCGCCGGCCCAATACCCTGCCACACTCGTCTC
CCTCCCTTTACCCTACCGCCGCCGCCAGCCGTGCCTTCTCAGCCCCGCCC
TCCGGCAAGAATGACTCTCACGATGATTTTAAGCCGCAAAAGACTGCCCC
ACCCGCAGATCTTGACGGGGCCATTAAGATGATTGCGGAACAGGTGAAGA
AGCATCAGATCATGCTGTACATGAAGGGCACGCCTGCCCGGCCGCAGTGT
GGCTTCTCGGCACAGGCCGTGCGGATTCTGCATGCTTCAGGGGTGGACTT
CGATTCGGTGAATGTGTTGGACTACCCCATGATCAGGGAGGGTGTCAAAA
AGTACTCGGAGTGGCCCACGGTACCTCAGCTCTTCGTGGCTGGGGAGTTT
GTGGGCGGGTGCGATATAATGACATCACTTTTTCAGTCGGGGGAACTGGC
TCAAATCTTGGAGGAGACGCTTAATCAGCAGAAGGAGGCGCAAAAGAGTG
GGGAGGGGAAGGCATGAGCAGAGAGAAGCAGGGGAAATGGTTTGAAGCAG
AAGGTGTACGTAAGAGGGATTGGGGGAGAGCGGGAAGATGATAGGAGGAG
GGAAAGAGAGGAGGAGAAAGGAATGAAAATTTTGAACGGAAAGATTACGG
AAGGGAAAGAAAAAGGAACACCTTATTTTCGACCCGAAGCGATTTAAAGA
CTGTATATTCGCCGTCAAAGGGACTGTCCCGCA
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protein sequence of NO23G00680.1

>NO23G00680.1-protein ID=NO23G00680.1-protein|Name=NO23G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MPAVSITTRFLLRVSTGVASKPLASLRRLTTTGLCRRPNTLPHSSPSLYP
TAAASRAFSAPPSGKNDSHDDFKPQKTAPPADLDGAIKMIAEQVKKHQIM
LYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEW
PTVPQLFVAGEFVGGCDIMTSLFQSGELAQILEETLNQQKEAQKSGEGKA
*
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mRNA from alignment at chr23:262308..263610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00680.1 ID=NO23G00680.1|Name=NO23G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp|location=Sequence derived from alignment at chr23:262308..263610- (Nannochloropsis oceanica)
TATGATAGGTGATGAGTTCAATGACGTGATAAGGGAGCGCTCGGTCGAGG
TCCTCGGCGGTGGGAAGAGGATAAGCATACGCAGACGCCGCGCCTCCTGG
CGAGTGGCAAATCCTTGCACCCCCACCTCTGTCGATCCCTTGTAGCACAT
ATGTGAAACCACGCATTCAAAACTCAATCCTCTCACGTGGGCTCTATAAC
ACAGAACTACAGTCATGCCAGCTGTCAGCATCACCACCCGGTTCTTGTTG
CGCGTCTCCACAGGGGTCGCGTCCAAGGTAAGATAAGGGCGTCGAAGGAG
ATGGGCAACAACCGACGGAGCAGCAATAGCATCGTGCCCGTGCATCACAT
TGACTCATGCCTGCCGGTCTACATACCCAATCCACAGCCTCTCGCATCCC
TTCGACGACTTACGACCACTGGTCTTTGTCGCCGGCCCAATACCCTGCCA
CACTCGTCTCCCTCCCTTTACCCTACCGCCGCCGCCAGCCGTGCCTTCTC
AGCCCCGCCCTCCGGCAAGAATGACTCTCACGATGATTTTAAGCCGCAAA
AGACTGCCCCACCCGCAGATCTTGACGGGGCCATTAAGATGATTGCGGAA
CAGGTGAAGAAGCATCAGATCATGCTGTACATGAAGGGCACGCCTGCCCG
GCCGCAGTGTGGCTTCTCGGCACAGGCCGTGCGGATTCTGCATGCTTCAG
GGGTGGACTTCGATTCGGTGAATGTGTTGGACTACCCCATGATCAGGGAG
GGTGTCAAAAAGTACTCGTAAGTCTAATTGGAAGAAGGTCGGGAGGAAGG
GGATGGGGAGGGGACATGATCTTGCGTTTCTTATGCGTCGCTCCTTCCAT
TCCTCTTCCCCGTTCCTCGTCTCTCACTCTTCTTCCTTTCCTCCTTCCTC
TTCATCATCACTTCACCAATTTTCAAGGGAGTGGCCCACGGTACCTCAGC
TCTTCGTGGCTGGGGAGTTTGTGGGCGGGTGCGATATAATGACATCACTT
TTTCAGTCGGGGGAACTGGCTCAAATCTTGGAGGAGACGCTTAATCAGCA
GAAGGAGGCGCAAAAGAGTGGGGAGGGGAAGGCATGAGCAGAGAGAAGCA
GGGGAAATGGTTTGAAGCAGAAGGTGTACGTAAGAGGGATTGGGGGAGAG
CGGGAAGATGATAGGAGGAGGGAAAGAGAGGAGGAGAAAGGAATGAAAAT
TTTGAACGGAAAGATTACGGAAGGGAAAGAAAAAGGAACACCTTATTTTC
GACCCGAAGCGATTTAAAGACTGTATATTCGCCGTCAAAGGGACTGTCCC
GCA
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Coding sequence (CDS) from alignment at chr23:262308..263610-

>NO23G00680.1 ID=NO23G00680.1|Name=NO23G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr23:262308..263610- (Nannochloropsis oceanica)
ATGCCAGCTGTCAGCATCACCACCCGGTTCTTGTTGCGCGTCTCCACAGG
GGTCGCGTCCAAGCCTCTCGCATCCCTTCGACGACTTACGACCACTGGTC
TTTGTCGCCGGCCCAATACCCTGCCACACTCGTCTCCCTCCCTTTACCCT
ACCGCCGCCGCCAGCCGTGCCTTCTCAGCCCCGCCCTCCGGCAAGAATGA
CTCTCACGATGATTTTAAGCCGCAAAAGACTGCCCCACCCGCAGATCTTG
ACGGGGCCATTAAGATGATTGCGGAACAGGTGAAGAAGCATCAGATCATG
CTGTACATGAAGGGCACGCCTGCCCGGCCGCAGTGTGGCTTCTCGGCACA
GGCCGTGCGGATTCTGCATGCTTCAGGGGTGGACTTCGATTCGGTGAATG
TGTTGGACTACCCCATGATCAGGGAGGGTGTCAAAAAGTACTCGGAGTGG
CCCACGGTACCTCAGCTCTTCGTGGCTGGGGAGTTTGTGGGCGGGTGCGA
TATAATGACATCACTTTTTCAGTCGGGGGAACTGGCTCAAATCTTGGAGG
AGACGCTTAATCAGCAGAAGGAGGCGCAAAAGAGTGGGGAGGGGAAGGCA
TGA
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Synonyms
Publications