NO23G00580, NO23G00580 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO23G00580 vs. NCBI_GenBank
Match: XP_024578381.1 (RIB7, arfC [Plasmopara halstedii] >CEG42012.1 RIB7, arfC [Plasmopara halstedii]) HSP 1 Score: 87.0 bits (214), Expect = 1.500e-13 Identity = 77/265 (29.06%), Postives = 118/265 (44.53%), Query Frame = 0 Query: 91 VPRPFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDL-SALRLSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSSSFSSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVG 355 V PF+TL YAQS+DG +A E KPT +S GPA++ +TH LR LH+ I++G GT+ +DNP LN RL + L+P +++ + R P L +++ +P ++F + L + E+ +L G + +EC S L D LR +K+ G + VMVEGG+G+LTS L+ + +D+ +VTIAP+FVG Sbjct: 30 VSMPFMTLTYAQSIDGSLAVERGKPTLLS---------------GPASMKMTHMLRTLHEGIMVGVGTILADNPSLNARL------------------------------AEGLNPR-------------PIIIDTHLRCPTNIKLFTSVTCEKPIILFGLGSQNETEELQ--KRKEILENL---GAQVLECK----IKSGRDGCDHVDLFDALRVVKQN-GIQSVMVEGGSGILTSCLQ----TASQKHFIDLVIVTIAPTFVG 222
BLAST of NO23G00580 vs. NCBI_GenBank
Match: XP_016609012.1 (riboflavin-specific deaminase domain-containing protein [Spizellomyces punctatus DAOM BR117] >KND00973.1 riboflavin-specific deaminase domain-containing protein [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 86.7 bits (213), Expect = 1.900e-13 Identity = 90/297 (30.30%), Postives = 122/297 (41.08%), Query Frame = 0 Query: 73 EWKAVAYSSSSSSASPHAVP-RPFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDL--SALRLSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSSSFSSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVGNGYKLIQTDGKY 367 E KA + S S A P RPFVTL YAQSLDG +A +KP +S+ P+A+VLTH LRA HD IL+G T+ SDNP L R + +S V+L S R PL L S ++ P++ T +S++ R+ A G R L + PS P++ S V K G + VMVEGGA V+ S L +D+ VVT+AP +VG G +I+ D + Sbjct: 9 EAKAYTFLKPHFSPSTLAPPGRPFVTLTYAQSLDGFIAAPGRKPLLLSS---------------PSAMVLTHALRATHDAILVGVDTVISDNPSLTTRFVAKGPGGTKATS------------------------------------PRPVILDSKLRSPLDAKLFSSTREDAKKPIVVTTDMSNVARKTALEALG--VRVLVV---------PSD-PNTGRVS------VPAALDALHKEGVKSVMVEGGATVIKSLLT------RSQQAIDLVVVTVAPVWVGTGVHVIRGDTSF 230
BLAST of NO23G00580 vs. NCBI_GenBank
Match: WP_105010837.1 (GTP cyclohydrolase II [Salinibacter sp. 10B] >PQJ33482.1 GTP cyclohydrolase II [Salinibacter sp. 10B]) HSP 1 Score: 86.7 bits (213), Expect = 1.900e-13 Identity = 86/273 (31.50%), Postives = 111/273 (40.66%), Query Frame = 0 Query: 93 RPFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDLSALRLSR---PPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSSSFSSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVGNGYKLIQT 363 RPFVTL YAQSLDG +AT+D P AIS G ++ TH LRA HD IL+G GT+ SD+PRLNVR SS V S L F A LSR P+I T + R+ A+G L+ C P + CL ++ L E+ G E VMVEGG V++SF+ R +VD ++T+AP FVG G + + T Sbjct: 231 RPFVTLTYAQSLDGSIATDDGSPLAIS---------------GSESMSFTHQLRATHDAILVGIGTVLSDDPRLNVRHSSGKHPTPVVLDSQ-----------------------------------------------LRFPTDARLLSREGPKPIIATNDKAPDDRKHALEAEGATVVRLS--------CDPRGI-----------CLDPLMEDLAER-GVESVMVEGGTEVISSFM--------RQQMVDHLILTVAPMFVG-GQRALST 412
BLAST of NO23G00580 vs. NCBI_GenBank
Match: XP_014156826.1 (hypothetical protein SARC_04817, partial [Sphaeroforma arctica JP610] >KNC82924.1 hypothetical protein SARC_04817, partial [Sphaeroforma arctica JP610]) HSP 1 Score: 86.3 bits (212), Expect = 2.500e-13 Identity = 85/275 (30.91%), Postives = 122/275 (44.36%), Query Frame = 0 Query: 93 RPFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDLSALRLSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEF--IECAPSSLPSSSSFSSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVGNGYKLIQTDGK 366 RP+VTL YAQSL+GC+AT ++ P AIS +LV+TH LRA HD IL+G GT+ +DNPRL VRL++ + PL ++L ++ R +P D++ L R P I + R+ G +L +G I+C + S VL LK++ G + +MVEGGA ++TSFL LVD VVTI+P F+ NG +L+ + K Sbjct: 179 RPYVTLTYAQSLNGCIATRERSPLAISC---------------DESLVMTHQLRADHDGILVGIGTVCADNPRLTVRLAN---------------------------GNDPL----------------PIILDTNLR--VPMDVTILDNKRKPWI--------VCRI--GCDESKIEALGARGVTVVPIDCEEGEMLDVSM----------VLGVLKQR-GIKSLMVEGGASIITSFL--------ASRLVDFVVVTISPVFI-NGLELVPSSSK 363
BLAST of NO23G00580 vs. NCBI_GenBank
Match: CCE28737.1 (related to riboflavin biosynthesis protein RIB7 [Claviceps purpurea 20.1]) HSP 1 Score: 84.3 bits (207), Expect = 9.600e-13 Identity = 89/295 (30.17%), Postives = 121/295 (41.02%), Query Frame = 0 Query: 71 LQEWKAVAYSSSSSSASPHAVP---------RPFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDLSALRLSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSSSFSSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVGNG 357 + + K + +SS++ PH P RPFVTL +A SLD S+LS L P + GP + +TH LR+ H ILIG TL +DNP LN RL TS P+ L P +P + L +G G PF L+ +R+ P P LL G +++ +S S S + SR DVL L + G VM+EGGA V+ S LE LVD +VTIAP+++G G Sbjct: 1 MAQQKVILPASSAAILEPHLPPSTAPSSLPARPFVTLTFATSLD-------------SSLS--LAPGVRTRLSGPGSKAMTHYLRSRHAAILIGVSTLLADNPGLNCRLEGTTSQPRPI----------------ILDPHLRWTPE---------PSDQVLTLCRAGAGLAPFVLTGVRVDDIP----PQQVQLLHD---------------HGGKYVHVPAASPTGSGSDARSRFAWEDVLSALLAE-GLLSVMIEGGAHVINSLLEPA-----HHALVDAVIVTIAPTWLGRG 230
BLAST of NO23G00580 vs. NCBI_GenBank
Match: KNE67579.1 (riboflavin-specific deaminase domain-containing protein [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 83.2 bits (204), Expect = 2.100e-12 Identity = 79/269 (29.37%), Postives = 117/269 (43.49%), Query Frame = 0 Query: 94 PFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDLSALR---LSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSSSFSSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVGNGYKL 360 PFVT+ +AQ+LDG V+ + AIS P A ++TH LRA HD IL+G GT+++DNPRL VRL+ + +LS LL ++ P ++ R LP ++ RP ++F P + ++ A E + L G + I A ++R L VLR L+ + G +MVEGG VL SFL + + + ++TIAP FVG+G L Sbjct: 47 PFVTVTWAQTLDGRVSGPNGNMMAISC---------------PEAFIMTHMLRATHDGILVGVGTVKNDNPRLTVRLTDLVADRG-------------EPVLSDLLATNHPQP-----------------IVLDPRLSLPETCHLVKNPTCRRPWIVFDPKAA----KVSDAAVAEKAKRLVTAGCKLIPVA-----------NARHDLHGVLRALRVQGGMCSIMVEGGRAVLESFLTA------QPSVANAVIITIAPRFVGSGVHL 249
BLAST of NO23G00580 vs. NCBI_GenBank
Match: PCH34154.1 (hypothetical protein WOLCODRAFT_94924 [Wolfiporia cocos MD-104 SS10]) HSP 1 Score: 83.2 bits (204), Expect = 2.100e-12 Identity = 85/262 (32.44%), Postives = 111/262 (42.37%), Query Frame = 0 Query: 93 RPFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDLSALRLSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSSSFSSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVG 355 RP+VTL YAQSLD +A K A+S G +LV+TH LR LHD I+IG GT +D+P+LN R +A +S L L L PS L N GRG R P + + + SS ++ + + L G +E L S R + D+L +LK +G VMVEGGA V+ SFL GG VDV +VTIAP+ VG Sbjct: 55 RPYVTLTYAQSLDAKIAGPGGKQLALS---------------GKESLVMTHWLRTLHDAIMIGIGTALNDDPQLNTRHLPPLPNA--ISKYHNPRPIILDANLR-LSPSCKLLKN-----------------YREGRG------------RRPWVISTTYSSSMQEY-----SQRKKELEDAGARVLE-----LASEDGMEHGRFDIPDLLAKLK-LFGIRSVMVEGGASVIQSFLAAASGGAS-GSQVDVVIVTIAPTLVG 257
BLAST of NO23G00580 vs. NCBI_GenBank
Match: WP_070118826.1 (GTP cyclohydrolase [Pseudohongiella acticola] >OFE11576.1 GTP cyclohydrolase [Pseudohongiella acticola]) HSP 1 Score: 82.4 bits (202), Expect = 3.600e-12 Identity = 84/286 (29.37%), Postives = 114/286 (39.86%), Query Frame = 0 Query: 83 SSSASPHAVPRPFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDLSALRLSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSSSF--------SSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVGNGYKLI 361 S A A RPFVTL+YAQS DG + + +P A+S G A+ LTH LR+LHD IL+G GT+ SD+PRLNVR +GP P P++ R+P GA+ L+ K + A ++ P S+ S+ R L D L +LK++ G +MVEGGA V+T FL + LVD V+T+AP VG GYK + Sbjct: 13 SQRAQLVARDRPFVTLSYAQSWDGSITLQSGEPLALS---------------GEPAMQLTHHLRSLHDGILVGIGTVLSDDPRLNVR---------------------------------------------------------QWQGPDP----------QPIVLDAQF-----RIPPGAR---LCHLSDKRCWVLTSAETACPVDSALEVIRLPGDSAGRVSLHDALGELKQR-GINSLMVEGGANVITGFL--------KQKLVDAIVLTVAPRLVG-GYKAV 198
BLAST of NO23G00580 vs. NCBI_GenBank
Match: WP_024461055.1 (hypothetical protein [Marinimicrobium sp. LS-A18]) HSP 1 Score: 82.0 bits (201), Expect = 4.800e-12 Identity = 84/297 (28.28%), Postives = 118/297 (39.73%), Query Frame = 0 Query: 65 LTCRRLLQEWKAVAYSSSSSSASPHAVPRPFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDL-SALRLSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSSSFSSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVGNGYKLI 361 +T + L++W +++ RP VTL YAQS DG +A++ P A+S G +L +TH LR+LHD IL+G GT+ +D+PRLNVR SGR P P L S LR+ P S L +R G G + +C P +P L + L+ L ++ G +MVEGGA V+T+FL R+GL D V+T+AP F+G GY I Sbjct: 1 MTFNQDLEQWLVSEQRHFHQASNNAKARRPHVTLTYAQSWDGSIASDPGTPMALS---------------GDESLRMTHQLRSLHDGILVGIGTVLADDPRLNVR-------------------------------------------------------KWSGRDPQPIVLDSHLRM--------PPSSRLCQR---GDHGCWVLTTVASADNRHDCEPIVVPGD---EEGHVNLHEALQLLYQR-GINTLMVEGGASVITAFL--------REGLADAVVLTVAPVFIG-GYNAI 203
BLAST of NO23G00580 vs. NCBI_GenBank
Match: PSQ62401.1 (GTP cyclohydrolase II [Bacteroidetes bacterium QH_10_64_19]) HSP 1 Score: 82.0 bits (201), Expect = 4.800e-12 Identity = 84/263 (31.94%), Postives = 106/263 (40.30%), Query Frame = 0 Query: 94 PFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSXXXXXFLSTLLSFLLPSSPLSPNXXXXXXXXXXXXXXVLLLSSGRGPLPFDLSALRLSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIE--CAPSSLPSSSSFSSSRCCLVDVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVG 355 PFVTL YAQSLDG +A +P +IS G AL LTH LRALHD IL+G GT +D+PRLNVR + S P+ ++L SS R PL L P ++ P +S E +L KG ++ CAP CL +L L E+ E VMVEGG +LTSFL R V ++TIAP F+G Sbjct: 233 PFVTLTYAQSLDGSIAQASGEPLSIS---------------GEDALDLTHRLRALHDGILVGIGTALADDPRLNVRRAEA---------------------------SHPV----------------PIVLDSSLRFPLDARLLTCEGPNPLIVSGPEAAS-----------ERRDALESKGATVVQLPCAP----------DGGVCLESLLEALGER-QIESVMVEGGTQILTSFL--------RQQQVQHVILTIAPMFMG 407 The following BLAST results are available for this feature:
BLAST of NO23G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO23G00580 ID=NO23G00580|Name=NO23G00580|organism=Nannochloropsis oceanica|type=gene|length=1488bpback to top protein sequence of NO23G00580.1 >NO23G00580.1-protein ID=NO23G00580.1-protein|Name=NO23G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bpback to top Synonyms
Publications
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