NO23G00580.1, NO23G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00580.1
Unique NameNO23G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1387
Alignment locationchr23:240023..241510 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:240023..241510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00580.1 vs.
Match: EJU02594.1 (hypothetical protein DACRYDRAFT_78429 [Dacryopinax primogenitus])

HSP 1 Score: 90.5 bits (223), Expect = 1.300e-14
Identity = 92/295 (31.19%), Postives = 128/295 (43.39%), Query Frame = 0 
Query:   82 SSSSASPHAVP-RPFVTLAYAQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHDCILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSPPSSSFLSTLLSFLLPSSPLSPNPSPPSSSRCRDPRPVLLLSSGRGPLPFDLSALRLSRPPLIFTPSLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSS--SFSSSRCCLVDVLRQLKE-------------------KWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAPSFVG 355
            SS+  +P + P +PF+TL YAQSLD  +A   + P ++S               G  +LVLTH +RA HD IL+G GT+  D+P+LNVRL              PPS+           P+S +S +PSP S+    +P P   L S   P P  L        P +  PS S LL  L  GA              +I CA   LP  +       +  L ++  ++ E                     G + +MVEGG  V+TSFL          GL+D+ +VT+AP  VG
Sbjct:   25 SSTPTNPSSNPSKPFLTLTYAQSLDSKIALRGR-PLSLS---------------GKESLVLTHLMRARHDAILVGVGTVLVDDPQLNVRL-------------LPPST-----------PTSTISTSPSPLSTPTPTNPSPSPALPSWPSPRPVILD-------PHLRLPSHSRLLTNLAQGAV-----------QPWIICAALELPDPAHPELKGRKAALSELGAEVFEVPLLADGHLSLPAVLDLLYSKGIQSLMVEGGQRVITSFL--------ASGLIDLLIVTVAPILVG 253
The following BLAST results are available for this feature:
BLAST of NO23G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EJU02594.11.300e-1431.19hypothetical protein DACRYDRAFT_78429 [Dacryopinax... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00580NO23G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00580.1NO23G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00580.1.cds1NO23G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00580.1.cds2NO23G00580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00580.1 ID=NO23G00580.1|Name=NO23G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
ATGAGGAGACCATCTGTACCAGGGCTCTTCTCGATTCTCGTGCTCTTCCT
CGTCATGGCAGCCGCTCACGCCATGGAAGTCCCTTCACCCAGCAGCCCAC
TCATGCTCGCCCCGCCACCTCCTCCTCCTCCCTCTTCCTCCTGTCCTCCC
TCCAATCCCCCACCCCACCCTCCTCTCAGCTGGTACGAGTGGTTGACTTG
CCGGCGTCTTCTTCAGGAGTGGAAAGCTGTCGCGTACTCCTCGTCCTCCT
CCTCTGCCTCCCCTCATGCGGTTCCCCGTCCGTTTGTCACTTTGGCCTAC
GCTCAGAGCCTGGATGGATGCGTTGCGACGGAAGACAAGAAGCCCACTGC
TATCTCAGCCCTTTCCCACTTCCTCCCTCCCTCCCTCACCGCCCTCCATC
GAGGTCCCGCGGCCCTCGTCCTCACTCACGACCTCCGAGCCCTGCATGAC
TGCATCTTGATCGGTGCCGGCACCCTCCAATCCGATAACCCTCGATTGAA
CGTCCGCCTCTCCTCCTGCACCTCGTCCGCTTGCCCCGTCTCTTCTTCCT
CCCCTCCCTCCTCCTCTTTCCTTTCTACCCTGCTCTCCTTCCTCCTCCCA
TCCTCCCCCCTCTCCCCCAACCCGTCTCCTCCTTCTTCCTCCCGCTGTCG
CGATCCTCGTCCCGTCCTTCTCCTTTCCTCGGGCCGAGGCCCCCTCCCAT
TTGACCTTTCCGCTCTCCGTCTTTCCCGCCCTCCCCTCATCTTCACTCCC
TCCCTATCATCCCTCCTTCGGCGCCTCCCCGGTGGCGCCAAGGGAGAACT
ATATCGCTCATTAACTTTGAAAGGATATGAGTTCATTGAGTGTGCCCCCT
CTTCCCTCCCTTCCTCGTCCTCGTTCTCGTCCTCGAGGTGCTGCCTGGTG
GACGTATTGAGACAGTTGAAAGAGAAGTGGGGATATGAGAGGGTCATGGT
GGAAGGAGGGGCCGGCGTGCTGACCTCGTTCCTGGAAGGAGGAGGAGGAG
GAGGAGAGCGAGACGGGCTGGTGGATGTGTGTGTGGTTACGATTGCCCCT
TCCTTTGTAGGGAATGGGTATAAGCTTATACAGACCGATGGTAAGTATTA
TTGTAATATTAAAAGTGAGAGAGGTGAAGTTAAGAAGAAAAATGACAAGA
ACAAAATGAACGAGCTAAGAGGCAAAAACGAGGGGGGGGGGAGAGGGGTC
CCTGGCTGGTACGGCTGGGGGAGGGAGGGAGGAAAGGAGGGGGCTGGCAT
GTGCATCGGTTAGGGAGGGACATCGTGGTCGTCGGGCGGCCGCAGTGGCC
CCGGGGAGACGCAGGACAGGGGGAGGGAAGGGCTCGATGAAGAGGTAAGG
AGGTAGAGAGAGAGGCAGATAAAGAGCGGAATTATTT
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protein sequence of NO23G00580.1

>NO23G00580.1-protein ID=NO23G00580.1-protein|Name=NO23G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MRRPSVPGLFSILVLFLVMAAAHAMEVPSPSSPLMLAPPPPPPPSSSCPP
SNPPPHPPLSWYEWLTCRRLLQEWKAVAYSSSSSSASPHAVPRPFVTLAY
AQSLDGCVATEDKKPTAISALSHFLPPSLTALHRGPAALVLTHDLRALHD
CILIGAGTLQSDNPRLNVRLSSCTSSACPVSSSSPPSSSFLSTLLSFLLP
SSPLSPNPSPPSSSRCRDPRPVLLLSSGRGPLPFDLSALRLSRPPLIFTP
SLSSLLRRLPGGAKGELYRSLTLKGYEFIECAPSSLPSSSSFSSSRCCLV
DVLRQLKEKWGYERVMVEGGAGVLTSFLEGGGGGGERDGLVDVCVVTIAP
SFVGNGYKLIQTDGKYYCNIKSERGEVKKKNDKNKMNELRGKNEGGGRGV
PGWYGWGREGGKEGAGMCIG*
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mRNA from alignment at chr23:240023..241510-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00580.1 ID=NO23G00580.1|Name=NO23G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp|location=Sequence derived from alignment at chr23:240023..241510- (Nannochloropsis oceanica)
ATGAGGAGACCATCTGTACCAGGGCTCTTCTCGATTCTCGTGCTCTTCCT
CGTCATGGCAGCCGCTCACGCCATGGAAGTCCCTTCACCCAGCAGCCCAC
TCATGCTCGCCCCGCCACCTCCTCCTCCTCCCTCTTCCTCCTGTCCTCCC
TCCAATCCCCCACCCCACCCTCCTCTCAGCTGGTACGAGTGGTTGACTTG
CCGGCGTCTTCTTCAGGAGTGGAAAGCTGTCGCGTACTCCTCGTCCTCCT
CCTCTGCCTCCCCTCATGCGGTTCCCCGTCCGTTTGTCACTTTGGCCTAC
GCTCAGAGCCTGGATGGATGCGTTGCGACGGAAGACAAGAAGCCCACTGC
TATCTCAGGTAAGGAGAAACACGTATCATACAGAAGTGAAGGAGGGCGTG
CTCTCCGATGATTTGCGGGGGGGGATGCCAATGCCTCTATCTGTAAAATT
TCACCGAAGCCCTTTCCCACTTCCTCCCTCCCTCCCTCACCGCCCTCCAT
CGAGGTCCCGCGGCCCTCGTCCTCACTCACGACCTCCGAGCCCTGCATGA
CTGCATCTTGATCGGTGCCGGCACCCTCCAATCCGATAACCCTCGATTGA
ACGTCCGCCTCTCCTCCTGCACCTCGTCCGCTTGCCCCGTCTCTTCTTCC
TCCCCTCCCTCCTCCTCTTTCCTTTCTACCCTGCTCTCCTTCCTCCTCCC
ATCCTCCCCCCTCTCCCCCAACCCGTCTCCTCCTTCTTCCTCCCGCTGTC
GCGATCCTCGTCCCGTCCTTCTCCTTTCCTCGGGCCGAGGCCCCCTCCCA
TTTGACCTTTCCGCTCTCCGTCTTTCCCGCCCTCCCCTCATCTTCACTCC
CTCCCTATCATCCCTCCTTCGGCGCCTCCCCGGTGGCGCCAAGGGAGAAC
TATATCGCTCATTAACTTTGAAAGGATATGAGTTCATTGAGTGTGCCCCC
TCTTCCCTCCCTTCCTCGTCCTCGTTCTCGTCCTCGAGGTGCTGCCTGGT
GGACGTATTGAGACAGTTGAAAGAGAAGTGGGGATATGAGAGGGTCATGG
TGGAAGGAGGGGCCGGCGTGCTGACCTCGTTCCTGGAAGGAGGAGGAGGA
GGAGGAGAGCGAGACGGGCTGGTGGATGTGTGTGTGGTTACGATTGCCCC
TTCCTTTGTAGGGAATGGGTATAAGCTTATACAGACCGATGGTAAGTATT
ATTGTAATATTAAAAGTGAGAGAGGTGAAGTTAAGAAGAAAAATGACAAG
AACAAAATGAACGAGCTAAGAGGCAAAAACGAGGGGGGGGGGAGAGGGGT
CCCTGGCTGGTACGGCTGGGGGAGGGAGGGAGGAAAGGAGGGGGCTGGCA
TGTGCATCGGTTAGGGAGGGACATCGTGGTCGTCGGGCGGCCGCAGTGGC
CCCGGGGAGACGCAGGACAGGGGGAGGGAAGGGCTCGATGAAGAGGTAAG
GAGGTAGAGAGAGAGGCAGATAAAGAGCGGAATTATTT
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Coding sequence (CDS) from alignment at chr23:240023..241510-

>NO23G00580.1 ID=NO23G00580.1|Name=NO23G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at chr23:240023..241510- (Nannochloropsis oceanica)
ATGAGGAGACCATCTGTACCAGGGCTCTTCTCGATTCTCGTGCTCTTCCT
CGTCATGGCAGCCGCTCACGCCATGGAAGTCCCTTCACCCAGCAGCCCAC
TCATGCTCGCCCCGCCACCTCCTCCTCCTCCCTCTTCCTCCTGTCCTCCC
TCCAATCCCCCACCCCACCCTCCTCTCAGCTGGTACGAGTGGTTGACTTG
CCGGCGTCTTCTTCAGGAGTGGAAAGCTGTCGCGTACTCCTCGTCCTCCT
CCTCTGCCTCCCCTCATGCGGTTCCCCGTCCGTTTGTCACTTTGGCCTAC
GCTCAGAGCCTGGATGGATGCGTTGCGACGGAAGACAAGAAGCCCACTGC
TATCTCAGCCCTTTCCCACTTCCTCCCTCCCTCCCTCACCGCCCTCCATC
GAGGTCCCGCGGCCCTCGTCCTCACTCACGACCTCCGAGCCCTGCATGAC
TGCATCTTGATCGGTGCCGGCACCCTCCAATCCGATAACCCTCGATTGAA
CGTCCGCCTCTCCTCCTGCACCTCGTCCGCTTGCCCCGTCTCTTCTTCCT
CCCCTCCCTCCTCCTCTTTCCTTTCTACCCTGCTCTCCTTCCTCCTCCCA
TCCTCCCCCCTCTCCCCCAACCCGTCTCCTCCTTCTTCCTCCCGCTGTCG
CGATCCTCGTCCCGTCCTTCTCCTTTCCTCGGGCCGAGGCCCCCTCCCAT
TTGACCTTTCCGCTCTCCGTCTTTCCCGCCCTCCCCTCATCTTCACTCCC
TCCCTATCATCCCTCCTTCGGCGCCTCCCCGGTGGCGCCAAGGGAGAACT
ATATCGCTCATTAACTTTGAAAGGATATGAGTTCATTGAGTGTGCCCCCT
CTTCCCTCCCTTCCTCGTCCTCGTTCTCGTCCTCGAGGTGCTGCCTGGTG
GACGTATTGAGACAGTTGAAAGAGAAGTGGGGATATGAGAGGGTCATGGT
GGAAGGAGGGGCCGGCGTGCTGACCTCGTTCCTGGAAGGAGGAGGAGGAG
GAGGAGAGCGAGACGGGCTGGTGGATGTGTGTGTGGTTACGATTGCCCCT
TCCTTTGTAGGGAATGGGTATAAGCTTATACAGACCGATGGTAAGTATTA
TTGTAATATTAAAAGTGAGAGAGGTGAAGTTAAGAAGAAAAATGACAAGA
ACAAAATGAACGAGCTAAGAGGCAAAAACGAGGGGGGGGGGAGAGGGGTC
CCTGGCTGGTACGGCTGGGGGAGGGAGGGAGGAAAGGAGGGGGCTGGCAT
GTGCATCGGTTAG
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Synonyms
Publications