NO23G00540, NO23G00540 (gene) Nannochloropsis oceanica

Overview
NameNO23G00540
Unique NameNO23G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2621
Alignment locationchr23:230199..232819 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:230199..232819 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00540.1NO23G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00540.1NO23G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00540 ID=NO23G00540|Name=NO23G00540|organism=Nannochloropsis oceanica|type=gene|length=2621bp
ATGAACGCCCAAACAATCGCCGCACGCCTGCAGGAGCTAGAGGCCCGACG
CACGGTTTTGCTGCAAGAGGAAGAGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAAAGGAGGGAGAAAAGACAGGGATTGCTCCCACCACCAGC
ATCACCACGACAAAAACAGAGCTCTGGGCACTCGTTGCAGAGGTACAGCA
AGAGCAGCAGCAGCAGCAGCACGAAAAGGAAGAAGGAAAGGAGGGTGGAA
AGGAGGACGAGAGGAGGAAGACGGGAGCCGAAGACACGGCTGTCTTGAGG
GAGGCCGTTCACCTAGCTGAAGCTCTTGTCCGCATTAGCACCCTGACCGC
CCTCCCTCCCCCCTTCCTTGCATCCCTTCAAACTCATGCGCACGCAAACG
TGGGTCCTCAAACCGAAAGTGGAGAAAGAGGAGACGGAGGAGGAGGAGGA
GGAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGAAGTAATGGA
ACTACCTGTCGTCGTCGCTCGCTTCTGTGAAGGCAAGCGGCTATTAGCTC
GCCTCTTGCTCGAAGGAGAAGAACGCAGCAGCAGCAGCAGTAACAGCACC
TCGCCCCGCTCTTCCTCCGCTCTGAGATCGTCCTCCCTCCTCCTCTCCTT
CTTCTCCCGTCAAATCAAACAAGCCACACGCACTCTCCGTGCCCGCCTCC
TCCTCGCCCTCTACTCCCAGGTTCTCCTTTTCAACCTGGCCTCCCCTCCC
TCCCTCCCTCTCCCCTCCTTCGTCCCTTCCTCCTCCCCCTTGGGAGGAGG
GTGGGCAGCGGCGATGGGGCTGCAGCTGGAGGAGGAGGAGGAGGAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAT
GGTTTAGAAAAAATTGTGTTGCGCCGATATCGTTGTCCGGGAGAAGGGAG
GGAGGGAGGGAGGGAGGGAGTGTTGTCCTCCGGGTTTTTGTCATTGTTGC
GGGCGTTGGTGTGGTTGGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAATCACCTGCATCATCAGCACGCGGGTGCGATAAGGGGAGAGAAGGA
GTGTGAGGGACGAAAGCAGGTAGAGAGAGTGCTGAGGCATGTGAGTGACA
TGATGCTGAGGGTGATGAAGCCCGCGATGGAGGGAGGGGGCGAGGGAGGC
CGGGTGCGGATGGCGGTGCTGAGGAAGACAGTCACTCCTGGAGGAGGAGG
AGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGAGGGAGAGGGAGAAGAGG
AAGTAATTACCTTGCATGTTGAACCCTCCTGCCCCGCTCCCTTGGGTCTC
TCCTCTTCCTCCCTCGCCTCCTCGTCCTCCCTCGGCACCTCCACCTCCTT
CTCCTCCGCCTCTTCCTCCCTCTCGTCTGGCCGTCGTGCGCAGCTGGGGA
GTGGAGGGAAGGTGGAAGAGCCGCAGCAGCAGCAGGGGCCGAATGTGGCG
GCCGTGATCACCAATGCCGACAAAGTGGCTACCTTTCTCTGTACTTACCT
GCTAGGAGAGGGGGGGAGGGAGGAAGGGGAGGGAGGGAGAGATGGAGGAG
AGGTGTGCCTAGATCCGTTGCTGCAGCCGATCATCGAAGTGATGGGAAGG
ACGCTTGAAGCAGCTTTGCTCTACTACCCTACCTCCCTTCCTCCCTCTTC
CTCGGCCACATCCTGCCCCCCATCCTCCCTCCCTTCCTCCTTCCCCTCCT
CTTCCTCCTCCTGCCCAAACGAAGAGGATCTGCATCGTGTCCGTGCTTTG
CTCTCTCTCCCTTTCTCCCCCTCTTCCTCCTCCCCTTCCTCCTCCGTCCC
TTCCTCCTTGTCTAAAGACAATCAAGGCGAGGGGAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGAGAGGGCGGGAGGAAGGAAGCATTCCTCGCCCTCATC
GCTCGACGAGCCCTCCGCCACCTTACCGAGGAAGGAGAAGAAGGGAAGGA
GGGAAGAAGGGAAGGAGGGAGAGCATGTCTCCCGGAAGGGGGAGGGGGGG
AGGGAGGGAGGGGAAGAGGGCGATTGCTTGGGCTGCAGACGAGGGCCAGG
GCCCTGCAGCTGAACCAGAAGTGCCTGCATTCCCTCCTTCATTCGTCCCG
GGAGCTGTTCCCGCCCTCGATGGCCGACCTGAAAGAGCAGGCGATGATGA
AATGGGAAGGATTGGAGAAAGAAGTCGTCAGTGTTTGGAGGGAGGGAGGG
CGGGAGGGCGGGAGGGAGGGAGGGGTTCTGACGGCAGTGGGGAGGGAAGT
AGCAGCGATGTTGCTACTTTTGGGGGAGGCGAGACTGGAGGAAGATAGAG
GGTGCGGGGGAGGAAGGGAGGGAGGGGGGGCATCGTCTGTCCGCCCTTCC
TCCCCTCGGCCGTTTTCGTTCTCGCCCCCTCCTCCCCCCCTCCTCCTCCT
AGCCCACTCCTTGATGAGGAGATACGGAGGGAGCTGTCTCTGCTGCTTTT
GAGTGTGAGTCACTATCAGAGCAGGGAGGGGGGAGGGAGGGAGGGAGGGA
AGGAACGAGGGGTTGGGCGATTCCGGATATGGTGGTGCGGTTGAGGCCGC
AGGTGGACGGCCAGTAGGGAG
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protein sequence of NO23G00540.1

>NO23G00540.1-protein ID=NO23G00540.1-protein|Name=NO23G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=834bp
MNAQTIAARLQELEARRTVLLQEEEAAAAAAAAAAATKEGEKTGIAPTTS
ITTTKTELWALVAEVQQEQQQQQHEKEEGKEGGKEDERRKTGAEDTAVLR
EAVHLAEALVRISTLTALPPPFLASLQTHAHANVGPQTESGERGDGGGGG
GGAAAAAAAAAAAEVMELPVVVARFCEGKRLLARLLLEGEERSSSSSNST
SPRSSSALRSSSLLLSFFSRQIKQATRTLRARLLLALYSQVLLFNLASPP
SLPLPSFVPSSSPLGGGWAAAMGLQLEEEEEEQQQQQQQQQQQQQQQQQH
GLEKIVLRRYRCPGEGREGGREGVLSSGFLSLLRALVWLGREEGGREGGR
ENHLHHQHAGAIRGEKECEGRKQVERVLRHVSDMMLRVMKPAMEGGGEGG
RVRMAVLRKTVTPGGGGGGGGGGGGGGEGEGEEEVITLHVEPSCPAPLGL
SSSSLASSSSLGTSTSFSSASSSLSSGRRAQLGSGGKVEEPQQQQGPNVA
AVITNADKVATFLCTYLLGEGGREEGEGGRDGGEVCLDPLLQPIIEVMGR
TLEAALLYYPTSLPPSSSATSCPPSSLPSSFPSSSSSCPNEEDLHRVRAL
LSLPFSPSSSSPSSSVPSSLSKDNQGEGRREGGREGGREGGRKEAFLALI
ARRALRHLTEEGEEGKEGRREGGRACLPEGGGGEGGRGRGRLLGLQTRAR
ALQLNQKCLHSLLHSSRELFPPSMADLKEQAMMKWEGLEKEVVSVWREGG
REGGREGGVLTAVGREVAAMLLLLGEARLEEDRGCGGGREGGGASSVRPS
SPRPFSFSPPPPPLLLLAHSLMRRYGGSCLCCF*
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Synonyms
Publications