NO23G00540.1, NO23G00540.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G00540.1
Unique Name	NO23G00540.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2621
Alignment location	chr23:230199..232819 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:230199..232819 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO23G00540.1 vs.

BLAST of NO23G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G00540	NO23G00540	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00540.1	NO23G00540.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00540.1.cds1	NO23G00540.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:230199..232819-
coding sequence from alignment at chr23:230199..232819-

mRNA sequence

>NO23G00540.1 ID=NO23G00540.1|Name=NO23G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2621bp
ATGAACGCCCAAACAATCGCCGCACGCCTGCAGGAGCTAGAGGCCCGACG
CACGGTTTTGCTGCAAGAGGAAGAGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAAAGGAGGGAGAAAAGACAGGGATTGCTCCCACCACCAGC
ATCACCACGACAAAAACAGAGCTCTGGGCACTCGTTGCAGAGGTACAGCA
AGAGCAGCAGCAGCAGCAGCACGAAAAGGAAGAAGGAAAGGAGGGTGGAA
AGGAGGACGAGAGGAGGAAGACGGGAGCCGAAGACACGGCTGTCTTGAGG
GAGGCCGTTCACCTAGCTGAAGCTCTTGTCCGCATTAGCACCCTGACCGC
CCTCCCTCCCCCCTTCCTTGCATCCCTTCAAACTCATGCGCACGCAAACG
TGGGTCCTCAAACCGAAAGTGGAGAAAGAGGAGACGGAGGAGGAGGAGGA
GGAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGAAGTAATGGA
ACTACCTGTCGTCGTCGCTCGCTTCTGTGAAGGCAAGCGGCTATTAGCTC
GCCTCTTGCTCGAAGGAGAAGAACGCAGCAGCAGCAGCAGTAACAGCACC
TCGCCCCGCTCTTCCTCCGCTCTGAGATCGTCCTCCCTCCTCCTCTCCTT
CTTCTCCCGTCAAATCAAACAAGCCACACGCACTCTCCGTGCCCGCCTCC
TCCTCGCCCTCTACTCCCAGGTTCTCCTTTTCAACCTGGCCTCCCCTCCC
TCCCTCCCTCTCCCCTCCTTCGTCCCTTCCTCCTCCCCCTTGGGAGGAGG
GTGGGCAGCGGCGATGGGGCTGCAGCTGGAGGAGGAGGAGGAGGAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAT
GGTTTAGAAAAAATTGTGTTGCGCCGATATCGTTGTCCGGGAGAAGGGAG
GGAGGGAGGGAGGGAGGGAGTGTTGTCCTCCGGGTTTTTGTCATTGTTGC
GGGCGTTGGTGTGGTTGGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAATCACCTGCATCATCAGCACGCGGGTGCGATAAGGGGAGAGAAGGA
GTGTGAGGGACGAAAGCAGGTAGAGAGAGTGCTGAGGCATGTGAGTGACA
TGATGCTGAGGGTGATGAAGCCCGCGATGGAGGGAGGGGGCGAGGGAGGC
CGGGTGCGGATGGCGGTGCTGAGGAAGACAGTCACTCCTGGAGGAGGAGG
AGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGAGGGAGAGGGAGAAGAGG
AAGTAATTACCTTGCATGTTGAACCCTCCTGCCCCGCTCCCTTGGGTCTC
TCCTCTTCCTCCCTCGCCTCCTCGTCCTCCCTCGGCACCTCCACCTCCTT
CTCCTCCGCCTCTTCCTCCCTCTCGTCTGGCCGTCGTGCGCAGCTGGGGA
GTGGAGGGAAGGTGGAAGAGCCGCAGCAGCAGCAGGGGCCGAATGTGGCG
GCCGTGATCACCAATGCCGACAAAGTGGCTACCTTTCTCTGTACTTACCT
GCTAGGAGAGGGGGGGAGGGAGGAAGGGGAGGGAGGGAGAGATGGAGGAG
AGGTGTGCCTAGATCCGTTGCTGCAGCCGATCATCGAAGTGATGGGAAGG
ACGCTTGAAGCAGCTTTGCTCTACTACCCTACCTCCCTTCCTCCCTCTTC
CTCGGCCACATCCTGCCCCCCATCCTCCCTCCCTTCCTCCTTCCCCTCCT
CTTCCTCCTCCTGCCCAAACGAAGAGGATCTGCATCGTGTCCGTGCTTTG
CTCTCTCTCCCTTTCTCCCCCTCTTCCTCCTCCCCTTCCTCCTCCGTCCC
TTCCTCCTTGTCTAAAGACAATCAAGGCGAGGGGAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGAGAGGGCGGGAGGAAGGAAGCATTCCTCGCCCTCATC
GCTCGACGAGCCCTCCGCCACCTTACCGAGGAAGGAGAAGAAGGGAAGGA
GGGAAGAAGGGAAGGAGGGAGAGCATGTCTCCCGGAAGGGGGAGGGGGGG
AGGGAGGGAGGGGAAGAGGGCGATTGCTTGGGCTGCAGACGAGGGCCAGG
GCCCTGCAGCTGAACCAGAAGTGCCTGCATTCCCTCCTTCATTCGTCCCG
GGAGCTGTTCCCGCCCTCGATGGCCGACCTGAAAGAGCAGGCGATGATGA
AATGGGAAGGATTGGAGAAAGAAGTCGTCAGTGTTTGGAGGGAGGGAGGG
CGGGAGGGCGGGAGGGAGGGAGGGGTTCTGACGGCAGTGGGGAGGGAAGT
AGCAGCGATGTTGCTACTTTTGGGGGAGGCGAGACTGGAGGAAGATAGAG
GGTGCGGGGGAGGAAGGGAGGGAGGGGGGGCATCGTCTGTCCGCCCTTCC
TCCCCTCGGCCGTTTTCGTTCTCGCCCCCTCCTCCCCCCCTCCTCCTCCT
AGCCCACTCCTTGATGAGGAGATACGGAGGGAGCTGTCTCTGCTGCTTTT
GAGTGTGAGTCACTATCAGAGCAGGGAGGGGGGAGGGAGGGAGGGAGGGA
AGGAACGAGGGGTTGGGCGATTCCGGATATGGTGGTGCGGTTGAGGCCGC
AGGTGGACGGCCAGTAGGGAG

protein sequence of NO23G00540.1

>NO23G00540.1-protein ID=NO23G00540.1-protein|Name=NO23G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=834bp
MNAQTIAARLQELEARRTVLLQEEEAAAAAAAAAAATKEGEKTGIAPTTS
ITTTKTELWALVAEVQQEQQQQQHEKEEGKEGGKEDERRKTGAEDTAVLR
EAVHLAEALVRISTLTALPPPFLASLQTHAHANVGPQTESGERGDGGGGG
GGAAAAAAAAAAAEVMELPVVVARFCEGKRLLARLLLEGEERSSSSSNST
SPRSSSALRSSSLLLSFFSRQIKQATRTLRARLLLALYSQVLLFNLASPP
SLPLPSFVPSSSPLGGGWAAAMGLQLEEEEEEQQQQQQQQQQQQQQQQQH
GLEKIVLRRYRCPGEGREGGREGVLSSGFLSLLRALVWLGREEGGREGGR
ENHLHHQHAGAIRGEKECEGRKQVERVLRHVSDMMLRVMKPAMEGGGEGG
RVRMAVLRKTVTPGGGGGGGGGGGGGGEGEGEEEVITLHVEPSCPAPLGL
SSSSLASSSSLGTSTSFSSASSSLSSGRRAQLGSGGKVEEPQQQQGPNVA
AVITNADKVATFLCTYLLGEGGREEGEGGRDGGEVCLDPLLQPIIEVMGR
TLEAALLYYPTSLPPSSSATSCPPSSLPSSFPSSSSSCPNEEDLHRVRAL
LSLPFSPSSSSPSSSVPSSLSKDNQGEGRREGGREGGREGGRKEAFLALI
ARRALRHLTEEGEEGKEGRREGGRACLPEGGGGEGGRGRGRLLGLQTRAR
ALQLNQKCLHSLLHSSRELFPPSMADLKEQAMMKWEGLEKEVVSVWREGG
REGGREGGVLTAVGREVAAMLLLLGEARLEEDRGCGGGREGGGASSVRPS
SPRPFSFSPPPPPLLLLAHSLMRRYGGSCLCCF*

mRNA from alignment at chr23:230199..232819-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G00540.1 ID=NO23G00540.1|Name=NO23G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2621bp|location=Sequence derived from alignment at chr23:230199..232819- (Nannochloropsis oceanica)
ATGAACGCCCAAACAATCGCCGCACGCCTGCAGGAGCTAGAGGCCCGACG
CACGGTTTTGCTGCAAGAGGAAGAGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAAAGGAGGGAGAAAAGACAGGGATTGCTCCCACCACCAGC
ATCACCACGACAAAAACAGAGCTCTGGGCACTCGTTGCAGAGGTACAGCA
AGAGCAGCAGCAGCAGCAGCACGAAAAGGAAGAAGGAAAGGAGGGTGGAA
AGGAGGACGAGAGGAGGAAGACGGGAGCCGAAGACACGGCTGTCTTGAGG
GAGGCCGTTCACCTAGCTGAAGCTCTTGTCCGCATTAGCACCCTGACCGC
CCTCCCTCCCCCCTTCCTTGCATCCCTTCAAACTCATGCGCACGCAAACG
TGGGTCCTCAAACCGAAAGTGGAGAAAGAGGAGACGGAGGAGGAGGAGGA
GGAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGAAGTAATGGA
ACTACCTGTCGTCGTCGCTCGCTTCTGTGAAGGCAAGCGGCTATTAGCTC
GCCTCTTGCTCGAAGGAGAAGAACGCAGCAGCAGCAGCAGTAACAGCACC
TCGCCCCGCTCTTCCTCCGCTCTGAGATCGTCCTCCCTCCTCCTCTCCTT
CTTCTCCCGTCAAATCAAACAAGCCACACGCACTCTCCGTGCCCGCCTCC
TCCTCGCCCTCTACTCCCAGGTTCTCCTTTTCAACCTGGCCTCCCCTCCC
TCCCTCCCTCTCCCCTCCTTCGTCCCTTCCTCCTCCCCCTTGGGAGGAGG
GTGGGCAGCGGCGATGGGGCTGCAGCTGGAGGAGGAGGAGGAGGAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAT
GGTTTAGAAAAAATTGTGTTGCGCCGATATCGTTGTCCGGGAGAAGGGAG
GGAGGGAGGGAGGGAGGGAGTGTTGTCCTCCGGGTTTTTGTCATTGTTGC
GGGCGTTGGTGTGGTTGGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAATCACCTGCATCATCAGCACGCGGGTGCGATAAGGGGAGAGAAGGA
GTGTGAGGGACGAAAGCAGGTAGAGAGAGTGCTGAGGCATGTGAGTGACA
TGATGCTGAGGGTGATGAAGCCCGCGATGGAGGGAGGGGGCGAGGGAGGC
CGGGTGCGGATGGCGGTGCTGAGGAAGACAGTCACTCCTGGAGGAGGAGG
AGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGAGGGAGAGGGAGAAGAGG
AAGTAATTACCTTGCATGTTGAACCCTCCTGCCCCGCTCCCTTGGGTCTC
TCCTCTTCCTCCCTCGCCTCCTCGTCCTCCCTCGGCACCTCCACCTCCTT
CTCCTCCGCCTCTTCCTCCCTCTCGTCTGGCCGTCGTGCGCAGCTGGGGA
GTGGAGGGAAGGTGGAAGAGCCGCAGCAGCAGCAGGGGCCGAATGTGGCG
GCCGTGATCACCAATGCCGACAAAGTGGCTACCTTTCTCTGTACTTACCT
GCTAGGAGAGGGGGGGAGGGAGGAAGGGGAGGGAGGGAGAGATGGAGGAG
AGGTGTGCCTAGATCCGTTGCTGCAGCCGATCATCGAAGTGATGGGAAGG
ACGCTTGAAGCAGCTTTGCTCTACTACCCTACCTCCCTTCCTCCCTCTTC
CTCGGCCACATCCTGCCCCCCATCCTCCCTCCCTTCCTCCTTCCCCTCCT
CTTCCTCCTCCTGCCCAAACGAAGAGGATCTGCATCGTGTCCGTGCTTTG
CTCTCTCTCCCTTTCTCCCCCTCTTCCTCCTCCCCTTCCTCCTCCGTCCC
TTCCTCCTTGTCTAAAGACAATCAAGGCGAGGGGAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGAGAGGGCGGGAGGAAGGAAGCATTCCTCGCCCTCATC
GCTCGACGAGCCCTCCGCCACCTTACCGAGGAAGGAGAAGAAGGGAAGGA
GGGAAGAAGGGAAGGAGGGAGAGCATGTCTCCCGGAAGGGGGAGGGGGGG
AGGGAGGGAGGGGAAGAGGGCGATTGCTTGGGCTGCAGACGAGGGCCAGG
GCCCTGCAGCTGAACCAGAAGTGCCTGCATTCCCTCCTTCATTCGTCCCG
GGAGCTGTTCCCGCCCTCGATGGCCGACCTGAAAGAGCAGGCGATGATGA
AATGGGAAGGATTGGAGAAAGAAGTCGTCAGTGTTTGGAGGGAGGGAGGG
CGGGAGGGCGGGAGGGAGGGAGGGGTTCTGACGGCAGTGGGGAGGGAAGT
AGCAGCGATGTTGCTACTTTTGGGGGAGGCGAGACTGGAGGAAGATAGAG
GGTGCGGGGGAGGAAGGGAGGGAGGGGGGGCATCGTCTGTCCGCCCTTCC
TCCCCTCGGCCGTTTTCGTTCTCGCCCCCTCCTCCCCCCCTCCTCCTCCT
AGCCCACTCCTTGATGAGGAGATACGGAGGGAGCTGTCTCTGCTGCTTTT
GAGTGTGAGTCACTATCAGAGCAGGGAGGGGGGAGGGAGGGAGGGAGGGA
AGGAACGAGGGGTTGGGCGATTCCGGATATGGTGGTGCGGTTGAGGCCGC
AGGTGGACGGCCAGTAGGGAG

Coding sequence (CDS) from alignment at chr23:230199..232819-

>NO23G00540.1 ID=NO23G00540.1|Name=NO23G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at chr23:230199..232819- (Nannochloropsis oceanica)
ATGAACGCCCAAACAATCGCCGCACGCCTGCAGGAGCTAGAGGCCCGACG
CACGGTTTTGCTGCAAGAGGAAGAGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAAAGGAGGGAGAAAAGACAGGGATTGCTCCCACCACCAGC
ATCACCACGACAAAAACAGAGCTCTGGGCACTCGTTGCAGAGGTACAGCA
AGAGCAGCAGCAGCAGCAGCACGAAAAGGAAGAAGGAAAGGAGGGTGGAA
AGGAGGACGAGAGGAGGAAGACGGGAGCCGAAGACACGGCTGTCTTGAGG
GAGGCCGTTCACCTAGCTGAAGCTCTTGTCCGCATTAGCACCCTGACCGC
CCTCCCTCCCCCCTTCCTTGCATCCCTTCAAACTCATGCGCACGCAAACG
TGGGTCCTCAAACCGAAAGTGGAGAAAGAGGAGACGGAGGAGGAGGAGGA
GGAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGAAGTAATGGA
ACTACCTGTCGTCGTCGCTCGCTTCTGTGAAGGCAAGCGGCTATTAGCTC
GCCTCTTGCTCGAAGGAGAAGAACGCAGCAGCAGCAGCAGTAACAGCACC
TCGCCCCGCTCTTCCTCCGCTCTGAGATCGTCCTCCCTCCTCCTCTCCTT
CTTCTCCCGTCAAATCAAACAAGCCACACGCACTCTCCGTGCCCGCCTCC
TCCTCGCCCTCTACTCCCAGGTTCTCCTTTTCAACCTGGCCTCCCCTCCC
TCCCTCCCTCTCCCCTCCTTCGTCCCTTCCTCCTCCCCCTTGGGAGGAGG
GTGGGCAGCGGCGATGGGGCTGCAGCTGGAGGAGGAGGAGGAGGAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAT
GGTTTAGAAAAAATTGTGTTGCGCCGATATCGTTGTCCGGGAGAAGGGAG
GGAGGGAGGGAGGGAGGGAGTGTTGTCCTCCGGGTTTTTGTCATTGTTGC
GGGCGTTGGTGTGGTTGGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAATCACCTGCATCATCAGCACGCGGGTGCGATAAGGGGAGAGAAGGA
GTGTGAGGGACGAAAGCAGGTAGAGAGAGTGCTGAGGCATGTGAGTGACA
TGATGCTGAGGGTGATGAAGCCCGCGATGGAGGGAGGGGGCGAGGGAGGC
CGGGTGCGGATGGCGGTGCTGAGGAAGACAGTCACTCCTGGAGGAGGAGG
AGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGAGGGAGAGGGAGAAGAGG
AAGTAATTACCTTGCATGTTGAACCCTCCTGCCCCGCTCCCTTGGGTCTC
TCCTCTTCCTCCCTCGCCTCCTCGTCCTCCCTCGGCACCTCCACCTCCTT
CTCCTCCGCCTCTTCCTCCCTCTCGTCTGGCCGTCGTGCGCAGCTGGGGA
GTGGAGGGAAGGTGGAAGAGCCGCAGCAGCAGCAGGGGCCGAATGTGGCG
GCCGTGATCACCAATGCCGACAAAGTGGCTACCTTTCTCTGTACTTACCT
GCTAGGAGAGGGGGGGAGGGAGGAAGGGGAGGGAGGGAGAGATGGAGGAG
AGGTGTGCCTAGATCCGTTGCTGCAGCCGATCATCGAAGTGATGGGAAGG
ACGCTTGAAGCAGCTTTGCTCTACTACCCTACCTCCCTTCCTCCCTCTTC
CTCGGCCACATCCTGCCCCCCATCCTCCCTCCCTTCCTCCTTCCCCTCCT
CTTCCTCCTCCTGCCCAAACGAAGAGGATCTGCATCGTGTCCGTGCTTTG
CTCTCTCTCCCTTTCTCCCCCTCTTCCTCCTCCCCTTCCTCCTCCGTCCC
TTCCTCCTTGTCTAAAGACAATCAAGGCGAGGGGAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGAGAGGGCGGGAGGAAGGAAGCATTCCTCGCCCTCATC
GCTCGACGAGCCCTCCGCCACCTTACCGAGGAAGGAGAAGAAGGGAAGGA
GGGAAGAAGGGAAGGAGGGAGAGCATGTCTCCCGGAAGGGGGAGGGGGGG
AGGGAGGGAGGGGAAGAGGGCGATTGCTTGGGCTGCAGACGAGGGCCAGG
GCCCTGCAGCTGAACCAGAAGTGCCTGCATTCCCTCCTTCATTCGTCCCG
GGAGCTGTTCCCGCCCTCGATGGCCGACCTGAAAGAGCAGGCGATGATGA
AATGGGAAGGATTGGAGAAAGAAGTCGTCAGTGTTTGGAGGGAGGGAGGG
CGGGAGGGCGGGAGGGAGGGAGGGGTTCTGACGGCAGTGGGGAGGGAAGT
AGCAGCGATGTTGCTACTTTTGGGGGAGGCGAGACTGGAGGAAGATAGAG
GGTGCGGGGGAGGAAGGGAGGGAGGGGGGGCATCGTCTGTCCGCCCTTCC
TCCCCTCGGCCGTTTTCGTTCTCGCCCCCTCCTCCCCCCCTCCTCCTCCT
AGCCCACTCCTTGATGAGGAGATACGGAGGGAGCTGTCTCTGCTGCTTTT
GA

Synonyms

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