NO23G00230, NO23G00230 (gene) Nannochloropsis oceanica

Overview
NameNO23G00230
Unique NameNO23G00230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2583
Alignment locationchr23:97065..99647 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat domain-containing protein 50
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:97065..99647 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00230.1NO23G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00230.1NO23G00230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00230 ID=NO23G00230|Name=NO23G00230|organism=Nannochloropsis oceanica|type=gene|length=2583bp
ATGGCGACGCCGCACGGGGGAGCGGGCGCGGAGCAACAAGAGGAGTTACT
GCCACAGCAACATCACCACCATCACGAGGTGGTGGAGGAGGAGCAGCAGC
TACAGCCTGACGCACAACAAGAGGTAGAAAGTTCGCTTGTCCTCTCGACA
GCAGAGTCTCTCGTCCATGCGGCCACCGTTGGCGACCTCCCCTATCTCCA
GCAACACCTTGACACCTTGGAACAAGAACAAGAAGGAGAAGCACTAGAAG
GCCGTAACCCCAATGCGACCTCCTCCCTCCATCCCTTCCCGCGTCCTTCC
TCCCGCCCTCCTCCCAACCTGTCCTCGCTTCTGGCGGTGGCGGCCGCGCA
TGGGCACGAAGCCTGCGTGACTTACCTCCTGAGACGAGGGGCGTCGGTGG
AGCACACCGACGAAGAAGgtacgtccctccgtctgctgcgttcctttttc
cgtccctctctccaaaatagtccctccatctcttgtgtctctccctctct
gcctcctcccttcctccctccctccctccctccctccctccctccttccc
gcccctcccttttgtcattcacgggagcacgtccgatttcctcaaccgtc
ttcccccctctttaggtcactcatcaagtcatcctccctcccttcccccc
cctcccctagGCTGCACTCCACTTTACGATGCTTGTAAGGCCGGGCACGA
AGGTGTCGTCCGGCTGCTGATCCAGgtgagagatggagagaggaagagtg
gagatagggagggagggaggaaggaaggaaggaaggaaggtatggagaga
gggagggaggaaagaccgaattgtttgagaaagagaagagtaggggaacg
ctggagacatactaaagcgcgtgcagctctctaactcctctccctccctc
cctccctccctccctcccccagGCGGAGAGCGATGTGCAGCGAAGCAATG
CCCGCGGTACCTCCCCTCTAATTTGTGCGGCGGGAGAAGGCCACACTAGA
GTAGTCGCCCTACTGATAAATACGCTGCTGAAGGAGGgtaagtagagaga
gagggagggagggaaggagggagggaaggagggagggagggagggaggga
gggagggagggagtgagggaggggggctggaacggtcgcacctctcactg
attcctcgatgtgatataatctccctccctcctcccctccctccccccct
ccctccttccttcccgtagGCCACGCGGATCACCTGGACCACCGCAACAG
CAACGGCAGCACGGCCCTCTGCTGGAGCGCATTTTACGGCCATACGCACG
TGACTCGCCTGCTCCTCATGGCAGgtacgtcgcgtcttcccgccctcctt
tcctcccgccctccctcggtctatgtccggcgtcccgcctgtggagtctt
tgcatccctccctccctccgtccctccccccctccctccccccctctcct
cccgtcattcgacaagcaccatcccaatcttttcgacacaccacatgccc
ttccctccctccctccctccctccctccctcccttatgcagGCGCCAATC
CCATCATCGCCAATAATGACGGTCGCTGCCCCCTGGTCAAGGCTAAGGAA
CGAGAGCACGAGGGCTGCATCGAGCTGCTCCAGgtaagccctccctcctt
ccctcctaccccccctccctccccccctaaaatcttcccatttcatccca
cccctcactctttcccatcttcctctccctctccctccgatcttcaatgt
gtctcacccctcctttttcctccctcactcttttccccctctcctcccct
ccctccctctttcactcctccccttgattggttcatcctaccccttccct
ccttccttccctccttctctccctccttccctccctctagACCTTCCACC
TCGAGCCCACCCGCACGTACCTCCTCCATAAACTCCGAGCCATTAGTAAT
GTCCGACACGCGCACCAACGGCATTCATCCCCCAGCCATCGGCAGCAGCA
ACAGCAGCAGCCCGAGGAGGGAGGGAGGGAGGAAGGGAGAAAGGAAGGGA
GGGAGAACGAGATGCCGCCCTTGGAGACTCTTTCTTCACCTTCCGCCTTC
TTTCCTCTCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGAAACGACCA
CCGTCGCCAGTGGTGACGCCTGCCCCTCCTCTTTGTCCTCTCCCCCACCC
TCCTTCCCTGCCCTCCTCTCGCCTTCCTCCTCCTTCTCCTCTACTTCAAC
CTCCTTCGCTCCCCCTCCCTTCCTTCGAGACAGAATGGAAGAGGGATTGG
AGCTGCCCTACGTCCGTATCATCGAGGGAGGGAGGGAAGGAGGGAGGGAA
GGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAAGGCCGCGGAGCGGAGACG
AGAAGTGTTGAGATACGTTGTTGGGGGGCAGGGAGGGGGGGAGGGAGGGG
GGGAGGGAGGAGCAATGGCAGCGGAGCATTTTGTAGAGCTGTTACAATAT
ATGACCTTGCGCTGGGCGGTTGGAGAGGGGTGA
back to top

protein sequence of NO23G00230.1

>NO23G00230.1-protein ID=NO23G00230.1-protein|Name=NO23G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MATPHGGAGAEQQEELLPQQHHHHHEVVEEEQQLQPDAQQEVESSLVLST
AESLVHAATVGDLPYLQQHLDTLEQEQEGEALEGRNPNATSSLHPFPRPS
SRPPPNLSSLLAVAAAHGHEACVTYLLRRGASVEHTDEEGCTPLYDACKA
GHEGVVRLLIQAESDVQRSNARGTSPLICAAGEGHTRVVALLINTLLKEG
HADHLDHRNSNGSTALCWSAFYGHTHVTRLLLMAGANPIIANNDGRCPLV
KAKEREHEGCIELLQTFHLEPTRTYLLHKLRAISNVRHAHQRHSSPSHRQ
QQQQQPEEGGREEGRKEGRENEMPPLETLSSPSAFFPLSSSSSSSSSSSS
SSSSSSSSSSSSSSSETTTVASGDACPSSLSSPPPSFPALLSPSSSFSST
STSFAPPPFLRDRMEEGLELPYVRIIEGGREGGREGGREGGREGGKAAER
RREVLRYVVGGQGGGEGGGEGGAMAAEHFVELLQYMTLRWAVGEG*
back to top
Synonyms
Publications