NO23G00090, NO23G00090 (gene) Nannochloropsis oceanica

Overview
NameNO23G00090
Unique NameNO23G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1405
Alignment locationchr23:33649..35053 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:33649..35053 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL037nonsL037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR095ncniR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008473NSK008473Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00090.1NO23G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613274gene_10838Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00090.1NO23G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00090 ID=NO23G00090|Name=NO23G00090|organism=Nannochloropsis oceanica|type=gene|length=1405bp
CTTGGCTGACCTCCCCCCCACCACCCCGCCCACACCCCTGCCTCTTCCGC
CACAACAGCGTGGTGTTCCGCTCTATATTTTATTCACCCCACCACCAATG
TCACTTGACACCTGTTGGCAAATAAACGTTGAGGATCTCAATCAGGTTTA
CGGCGGCCGACGAGATCCCCAGACTGGGAGGACACTTCTACACAACGCGG
CCTCCCAAGGAAATTCAGACATCGTCCGCTGGCTGATAGAGGGAAAAAAA
ATCAACATCGCTGCACAGGACTTAAAAGGGGTGACAGTGCTAGAGTGTGT
GACCATTCTGGGTTGCGCTGCTGGTGTAGCAGTAGTCGAAGTTGTCGAAT
ACTTAATGGCGCACCATGCGCCAGAGGATGCGGACCACCTCTTGAAGATC
GTGAGGGGCATGGGTACGGACGAGGAAAAGTATCTTGAAGTAGTAGCTTG
CGTGCTAAGATACACCAAGGGCGAAACACTGAACTACATCGACCATCATT
ACTACACGCCTTTGGCCTGTGCCTGCGTCAGGGGTTACGCAAAAGTGGCA
CACTTGCTCCTCCTTGCGGGTGCTGAAGCTTACGAGACATACCCCTTTTC
CCACTCAAATGCCGTTAAATGGGATCCAGGCAACCGCAACGCATTAGTAA
AGGCCAAGGCGATTTTTGGGCGTGATTCAGCAAAGAAACGTGCGGCGAGG
CTCCGGTGTGTGGCGTTGATCGAGgtatgtggttggtaccctacggacgg
gaaggaggcttaagtgggattattaggttactccaatgcatgagtgatat
atcatctaatctgcaccttaatgctatcgaagtatttttaaaacctgcaa
tggtgtgaaaaggtgatattaaccaggcggtgcatgggtaaagtgaaaga
aggactgggcatgcaggagctgactcaactcctcttgtatatttgcgact
catcttccctctaaaataactgcagACTGTGCCTCGAGTCGTCCTCCTGC
ATAAATGCCGCGAGCTTCATGGTGCTACTGACTTTCTCAGAGAATGTATG
GGTGGGGCAGTAGAAGAAATTTATGACATAAAAAAAGAAATTAAGATAGC
CGAGAAACGAGAAAGGCTGCGTGGGATGAGCTTTTTGTGCGATCGAGTCG
AGCCAATGGTCTTGCCTGTGATAGAAATCAATGATAAAGGCGCGGACGAG
GTGGTAGTGGCGTGTGTGCAGCATGTGGTAAAGGGTGGGCTTTTGCCGGA
TGTGTGGCACGAATTGTTGGAAATGCTGGACGTATGAGGTTATGTGGGGG
TGAGGAGATTAAAAGGAATATAAATGTACAGTAACAATATGGTATAATTC
ATCATGAAAGATTATGAAATTAAGGAGAAAGTGAATCGAAGCATGTTGAG
GAAGA
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protein sequence of NO23G00090.1

>NO23G00090.1-protein ID=NO23G00090.1-protein|Name=NO23G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MSLDTCWQINVEDLNQVYGGRRDPQTGRTLLHNAASQGNSDIVRWLIEGK
KINIAAQDLKGVTVLECVTILGCAAGVAVVEVVEYLMAHHAPEDADHLLK
IVRGMGTDEEKYLEVVACVLRYTKGETLNYIDHHYYTPLACACVRGYAKV
AHLLLLAGAEAYETYPFSHSNAVKWDPGNRNALVKAKAIFGRDSAKKRAA
RLRCVALIETVPRVVLLHKCRELHGATDFLRECMGGAVEEIYDIKKEIKI
AEKRERLRGMSFLCDRVEPMVLPVIEINDKGADEVVVACVQHVVKGGLLP
DVWHELLEMLDV*
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Synonyms
Publications