NO23G00090.1, NO23G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00090.1
Unique NameNO23G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1154
Alignment locationchr23:33649..35053 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:33649..35053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00090.1 vs.
Match: XP_019854452.1 (PREDICTED: ankyrin repeat domain-containing protein 17-like isoform X2 [Amphimedon queenslandica])

HSP 1 Score: 68.6 bits (166), Expect = 4.000e-8
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 0 
Query:   29 TLLHNAASQGNSDIVRWLIEGKKINIAAQDLKGVTVLECVTILGCAAGVAVVEVVEYLMAHHA--------PEDADHLLKIVRGMGTDEEKYLEV-VACVLRYTK---------GETLNYIDHHYYTPLACACVRGYAKVAHLLLLAGAEAYET 165
            TLLH A    NSD V  L++ K ++I+A D    T L C     C AG    E+VE L+   A          DAD  +K    + TD  K + + +AC+  +T+         G  +N+I+    TPLA AC+RG+ K+  LLL  GA A  T
Sbjct:   11 TLLHQACLMNNSDKVAKLLQDKTVDISATDENNSTPLHCA----CQAGHT--EIVELLIKERANRLTSSLHENDADSKIKSFFNL-TDNHKNIPLGLACIEGHTEIVELLLEQEGVDINHINSQKRTPLAMACIRGHTKIVELLLKKGANANVT 157
The following BLAST results are available for this feature:
BLAST of NO23G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_019854452.14.000e-835.06PREDICTED: ankyrin repeat domain-containing protei... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00090NO23G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00090.1NO23G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00090.1.cds1NO23G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00090.1.cds2NO23G00090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00090.1 ID=NO23G00090.1|Name=NO23G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
CTTGGCTGACCTCCCCCCCACCACCCCGCCCACACCCCTGCCTCTTCCGC
CACAACAGCGTGGTGTTCCGCTCTATATTTTATTCACCCCACCACCAATG
TCACTTGACACCTGTTGGCAAATAAACGTTGAGGATCTCAATCAGGTTTA
CGGCGGCCGACGAGATCCCCAGACTGGGAGGACACTTCTACACAACGCGG
CCTCCCAAGGAAATTCAGACATCGTCCGCTGGCTGATAGAGGGAAAAAAA
ATCAACATCGCTGCACAGGACTTAAAAGGGGTGACAGTGCTAGAGTGTGT
GACCATTCTGGGTTGCGCTGCTGGTGTAGCAGTAGTCGAAGTTGTCGAAT
ACTTAATGGCGCACCATGCGCCAGAGGATGCGGACCACCTCTTGAAGATC
GTGAGGGGCATGGGTACGGACGAGGAAAAGTATCTTGAAGTAGTAGCTTG
CGTGCTAAGATACACCAAGGGCGAAACACTGAACTACATCGACCATCATT
ACTACACGCCTTTGGCCTGTGCCTGCGTCAGGGGTTACGCAAAAGTGGCA
CACTTGCTCCTCCTTGCGGGTGCTGAAGCTTACGAGACATACCCCTTTTC
CCACTCAAATGCCGTTAAATGGGATCCAGGCAACCGCAACGCATTAGTAA
AGGCCAAGGCGATTTTTGGGCGTGATTCAGCAAAGAAACGTGCGGCGAGG
CTCCGGTGTGTGGCGTTGATCGAGACTGTGCCTCGAGTCGTCCTCCTGCA
TAAATGCCGCGAGCTTCATGGTGCTACTGACTTTCTCAGAGAATGTATGG
GTGGGGCAGTAGAAGAAATTTATGACATAAAAAAAGAAATTAAGATAGCC
GAGAAACGAGAAAGGCTGCGTGGGATGAGCTTTTTGTGCGATCGAGTCGA
GCCAATGGTCTTGCCTGTGATAGAAATCAATGATAAAGGCGCGGACGAGG
TGGTAGTGGCGTGTGTGCAGCATGTGGTAAAGGGTGGGCTTTTGCCGGAT
GTGTGGCACGAATTGTTGGAAATGCTGGACGTATGAGGTTATGTGGGGGT
GAGGAGATTAAAAGGAATATAAATGTACAGTAACAATATGGTATAATTCA
TCATGAAAGATTATGAAATTAAGGAGAAAGTGAATCGAAGCATGTTGAGG
AAGA
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protein sequence of NO23G00090.1

>NO23G00090.1-protein ID=NO23G00090.1-protein|Name=NO23G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MSLDTCWQINVEDLNQVYGGRRDPQTGRTLLHNAASQGNSDIVRWLIEGK
KINIAAQDLKGVTVLECVTILGCAAGVAVVEVVEYLMAHHAPEDADHLLK
IVRGMGTDEEKYLEVVACVLRYTKGETLNYIDHHYYTPLACACVRGYAKV
AHLLLLAGAEAYETYPFSHSNAVKWDPGNRNALVKAKAIFGRDSAKKRAA
RLRCVALIETVPRVVLLHKCRELHGATDFLRECMGGAVEEIYDIKKEIKI
AEKRERLRGMSFLCDRVEPMVLPVIEINDKGADEVVVACVQHVVKGGLLP
DVWHELLEMLDV*
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mRNA from alignment at chr23:33649..35053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00090.1 ID=NO23G00090.1|Name=NO23G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp|location=Sequence derived from alignment at chr23:33649..35053- (Nannochloropsis oceanica)
CTTGGCTGACCTCCCCCCCACCACCCCGCCCACACCCCTGCCTCTTCCGC
CACAACAGCGTGGTGTTCCGCTCTATATTTTATTCACCCCACCACCAATG
TCACTTGACACCTGTTGGCAAATAAACGTTGAGGATCTCAATCAGGTTTA
CGGCGGCCGACGAGATCCCCAGACTGGGAGGACACTTCTACACAACGCGG
CCTCCCAAGGAAATTCAGACATCGTCCGCTGGCTGATAGAGGGAAAAAAA
ATCAACATCGCTGCACAGGACTTAAAAGGGGTGACAGTGCTAGAGTGTGT
GACCATTCTGGGTTGCGCTGCTGGTGTAGCAGTAGTCGAAGTTGTCGAAT
ACTTAATGGCGCACCATGCGCCAGAGGATGCGGACCACCTCTTGAAGATC
GTGAGGGGCATGGGTACGGACGAGGAAAAGTATCTTGAAGTAGTAGCTTG
CGTGCTAAGATACACCAAGGGCGAAACACTGAACTACATCGACCATCATT
ACTACACGCCTTTGGCCTGTGCCTGCGTCAGGGGTTACGCAAAAGTGGCA
CACTTGCTCCTCCTTGCGGGTGCTGAAGCTTACGAGACATACCCCTTTTC
CCACTCAAATGCCGTTAAATGGGATCCAGGCAACCGCAACGCATTAGTAA
AGGCCAAGGCGATTTTTGGGCGTGATTCAGCAAAGAAACGTGCGGCGAGG
CTCCGGTGTGTGGCGTTGATCGAGGTATGTGGTTGGTACCCTACGGACGG
GAAGGAGGCTTAAGTGGGATTATTAGGTTACTCCAATGCATGAGTGATAT
ATCATCTAATCTGCACCTTAATGCTATCGAAGTATTTTTAAAACCTGCAA
TGGTGTGAAAAGGTGATATTAACCAGGCGGTGCATGGGTAAAGTGAAAGA
AGGACTGGGCATGCAGGAGCTGACTCAACTCCTCTTGTATATTTGCGACT
CATCTTCCCTCTAAAATAACTGCAGACTGTGCCTCGAGTCGTCCTCCTGC
ATAAATGCCGCGAGCTTCATGGTGCTACTGACTTTCTCAGAGAATGTATG
GGTGGGGCAGTAGAAGAAATTTATGACATAAAAAAAGAAATTAAGATAGC
CGAGAAACGAGAAAGGCTGCGTGGGATGAGCTTTTTGTGCGATCGAGTCG
AGCCAATGGTCTTGCCTGTGATAGAAATCAATGATAAAGGCGCGGACGAG
GTGGTAGTGGCGTGTGTGCAGCATGTGGTAAAGGGTGGGCTTTTGCCGGA
TGTGTGGCACGAATTGTTGGAAATGCTGGACGTATGAGGTTATGTGGGGG
TGAGGAGATTAAAAGGAATATAAATGTACAGTAACAATATGGTATAATTC
ATCATGAAAGATTATGAAATTAAGGAGAAAGTGAATCGAAGCATGTTGAG
GAAGA
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Coding sequence (CDS) from alignment at chr23:33649..35053-

>NO23G00090.1 ID=NO23G00090.1|Name=NO23G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr23:33649..35053- (Nannochloropsis oceanica)
ATGTCACTTGACACCTGTTGGCAAATAAACGTTGAGGATCTCAATCAGGT
TTACGGCGGCCGACGAGATCCCCAGACTGGGAGGACACTTCTACACAACG
CGGCCTCCCAAGGAAATTCAGACATCGTCCGCTGGCTGATAGAGGGAAAA
AAAATCAACATCGCTGCACAGGACTTAAAAGGGGTGACAGTGCTAGAGTG
TGTGACCATTCTGGGTTGCGCTGCTGGTGTAGCAGTAGTCGAAGTTGTCG
AATACTTAATGGCGCACCATGCGCCAGAGGATGCGGACCACCTCTTGAAG
ATCGTGAGGGGCATGGGTACGGACGAGGAAAAGTATCTTGAAGTAGTAGC
TTGCGTGCTAAGATACACCAAGGGCGAAACACTGAACTACATCGACCATC
ATTACTACACGCCTTTGGCCTGTGCCTGCGTCAGGGGTTACGCAAAAGTG
GCACACTTGCTCCTCCTTGCGGGTGCTGAAGCTTACGAGACATACCCCTT
TTCCCACTCAAATGCCGTTAAATGGGATCCAGGCAACCGCAACGCATTAG
TAAAGGCCAAGGCGATTTTTGGGCGTGATTCAGCAAAGAAACGTGCGGCG
AGGCTCCGGTGTGTGGCGTTGATCGAGACTGTGCCTCGAGTCGTCCTCCT
GCATAAATGCCGCGAGCTTCATGGTGCTACTGACTTTCTCAGAGAATGTA
TGGGTGGGGCAGTAGAAGAAATTTATGACATAAAAAAAGAAATTAAGATA
GCCGAGAAACGAGAAAGGCTGCGTGGGATGAGCTTTTTGTGCGATCGAGT
CGAGCCAATGGTCTTGCCTGTGATAGAAATCAATGATAAAGGCGCGGACG
AGGTGGTAGTGGCGTGTGTGCAGCATGTGGTAAAGGGTGGGCTTTTGCCG
GATGTGTGGCACGAATTGTTGGAAATGCTGGACGTATGA
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Synonyms
Publications