NO23G00080, NO23G00080 (gene) Nannochloropsis oceanica

Overview
NameNO23G00080
Unique NameNO23G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length794
Alignment locationchr23:32435..33228 -

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome b5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:32435..33228 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036400Cyt_B5-like_heme/steroid_sf
IPR001199Cyt_B5-like_heme/steroid-bd
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
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BLAST of NO23G00080 vs. NCBI_GenBank
Match: EWM23019.1 (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 3.600e-30
Identity = 67/103 (65.05%), Postives = 81/103 (78.64%), Query Frame = 0 
Query:    1 MFTKLFNSGSKNGNSSKPFEGDVESLWYLDGKAYDLGKFVKMHPGGADVLLELRGKNGTSAFHDAHGTSPSSAPHKKLLRMEVKGVSAEVLALKFPKSEQVAP 104
            MF+KLF S  K+    KPF+GD+E LWYL+GKAYDL KFVKMHPGG+DVLLEL+GK+GT+AF DAHG +P+S P KKL RMEVKG+SAEVL+ +F       P
Sbjct:   30 MFSKLFKSHKKD-EPLKPFQGDLEGLWYLEGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNPTSTPRKKLGRMEVKGISAEVLSSRFSGDRDQCP 131
The following BLAST results are available for this feature:
BLAST of NO23G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23019.13.600e-3065.05cytochrome b5 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL037nonsL037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR095ncniR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008474NSK008474Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00080.1NO23G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613278gene_10839Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101010g1gene7430Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00080.1NO23G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00080 ID=NO23G00080|Name=NO23G00080|organism=Nannochloropsis oceanica|type=gene|length=794bp
AGCCCGTTAGGCAAAAGACCACACACGCCTGCCGTGGTGCGGGTCCAAGA
AAGAAGAATGTTCACCAAACTCTTTAATAGCGGTAGTAAAAATGGCAACT
CGAGCAAGCCCTTCGAAGGGGACGTGGAGAGTCTGTGGTATTTAGACGGC
AAGGCGTATGATTTGGGCAAGTTTGTCAAGATGCATCCAGgtaagcaggg
aaagcagatgaactgctgtaggaggatataagtagcaaaatgaatatgaa
agaaagcaaagtcgatgtgtgtttatccaaccatgtatgtgtgttgtgtt
tttcatacgtcgaaacaacactcccgtatcccttacccctccccctctct
cccatccttccttcccaccctcctctccccttccttctcgaacgcacagG
TGGCGCCGACGTCCTCCTCGAGCTCCGAGGAAAAAATGGCACCTCTGCTT
TTCATGATGCTCACGGGACAAGTCCTTCCTCCGCCCCTCACAAGAAACTA
TTGCGGATGGAAGTGAAGGGGGTGAGTGCGGAGGTCCTGGCGCTAAAATT
CCCGAAGAGTGAGCAAGTTGCGCCATAGAGAGGAAGAATCAAATGACTGC
TTATACATCAAGTGAGTGCTGCTGGTACTGGATTTGAAGGGTGGGTGTTA
AAAGTGATTGCCGAGGCGTGGGTAGCGGAGATTTTAGATGGCTAGTAGCA
AAGAGGGCAAGGTATTTACTCGTTGATCCATCGAGAGACGGCTAGCTACC
ATACGGTCGGGAAGAAGAAAACAATGACGAGCTTGAACATCAAG
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protein sequence of NO23G00080.1

>NO23G00080.1-protein ID=NO23G00080.1-protein|Name=NO23G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MFTKLFNSGSKNGNSSKPFEGDVESLWYLDGKAYDLGKFVKMHPGGADVL
LELRGKNGTSAFHDAHGTSPSSAPHKKLLRMEVKGVSAEVLALKFPKSEQ
VAP*
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Synonyms
Publications