NO23G00080.1, NO23G00080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00080.1
Unique NameNO23G00080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length585
Alignment locationchr23:32435..33228 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:32435..33228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00080.1 vs.
Match: EWM23019.1 (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 3.600e-30
Identity = 67/103 (65.05%), Postives = 81/103 (78.64%), Query Frame = 0 
Query:    1 MFTKLFNSGSKNGNSSKPFEGDVESLWYLDGKAYDLGKFVKMHPGGADVLLELRGKNGTSAFHDAHGTSPSSAPHKKLLRMEVKGVSAEVLALKFPKSEQVAP 104
            MF+KLF S  K+    KPF+GD+E LWYL+GKAYDL KFVKMHPGG+DVLLEL+GK+GT+AF DAHG +P+S P KKL RMEVKG+SAEVL+ +F       P
Sbjct:   30 MFSKLFKSHKKD-EPLKPFQGDLEGLWYLEGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNPTSTPRKKLGRMEVKGISAEVLSSRFSGDRDQCP 131
The following BLAST results are available for this feature:
BLAST of NO23G00080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23019.13.600e-3065.05cytochrome b5 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00080NO23G00080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00080.1NO23G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00080.1.cds1NO23G00080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00080.1.cds2NO23G00080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00080.1 ID=NO23G00080.1|Name=NO23G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=585bp
AGCCCGTTAGGCAAAAGACCACACACGCCTGCCGTGGTGCGGGTCCAAGA
AAGAAGAATGTTCACCAAACTCTTTAATAGCGGTAGTAAAAATGGCAACT
CGAGCAAGCCCTTCGAAGGGGACGTGGAGAGTCTGTGGTATTTAGACGGC
AAGGCGTATGATTTGGGCAAGTTTGTCAAGATGCATCCAGGTGGCGCCGA
CGTCCTCCTCGAGCTCCGAGGAAAAAATGGCACCTCTGCTTTTCATGATG
CTCACGGGACAAGTCCTTCCTCCGCCCCTCACAAGAAACTATTGCGGATG
GAAGTGAAGGGGGTGAGTGCGGAGGTCCTGGCGCTAAAATTCCCGAAGAG
TGAGCAAGTTGCGCCATAGAGAGGAAGAATCAAATGACTGCTTATACATC
AAGTGAGTGCTGCTGGTACTGGATTTGAAGGGTGGGTGTTAAAAGTGATT
GCCGAGGCGTGGGTAGCGGAGATTTTAGATGGCTAGTAGCAAAGAGGGCA
AGGTATTTACTCGTTGATCCATCGAGAGACGGCTAGCTACCATACGGTCG
GGAAGAAGAAAACAATGACGAGCTTGAACATCAAG
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protein sequence of NO23G00080.1

>NO23G00080.1-protein ID=NO23G00080.1-protein|Name=NO23G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MFTKLFNSGSKNGNSSKPFEGDVESLWYLDGKAYDLGKFVKMHPGGADVL
LELRGKNGTSAFHDAHGTSPSSAPHKKLLRMEVKGVSAEVLALKFPKSEQ
VAP*
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mRNA from alignment at chr23:32435..33228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00080.1 ID=NO23G00080.1|Name=NO23G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=794bp|location=Sequence derived from alignment at chr23:32435..33228- (Nannochloropsis oceanica)
AGCCCGTTAGGCAAAAGACCACACACGCCTGCCGTGGTGCGGGTCCAAGA
AAGAAGAATGTTCACCAAACTCTTTAATAGCGGTAGTAAAAATGGCAACT
CGAGCAAGCCCTTCGAAGGGGACGTGGAGAGTCTGTGGTATTTAGACGGC
AAGGCGTATGATTTGGGCAAGTTTGTCAAGATGCATCCAGGTAAGCAGGG
AAAGCAGATGAACTGCTGTAGGAGGATATAAGTAGCAAAATGAATATGAA
AGAAAGCAAAGTCGATGTGTGTTTATCCAACCATGTATGTGTGTTGTGTT
TTTCATACGTCGAAACAACACTCCCGTATCCCTTACCCCTCCCCCTCTCT
CCCATCCTTCCTTCCCACCCTCCTCTCCCCTTCCTTCTCGAACGCACAGG
TGGCGCCGACGTCCTCCTCGAGCTCCGAGGAAAAAATGGCACCTCTGCTT
TTCATGATGCTCACGGGACAAGTCCTTCCTCCGCCCCTCACAAGAAACTA
TTGCGGATGGAAGTGAAGGGGGTGAGTGCGGAGGTCCTGGCGCTAAAATT
CCCGAAGAGTGAGCAAGTTGCGCCATAGAGAGGAAGAATCAAATGACTGC
TTATACATCAAGTGAGTGCTGCTGGTACTGGATTTGAAGGGTGGGTGTTA
AAAGTGATTGCCGAGGCGTGGGTAGCGGAGATTTTAGATGGCTAGTAGCA
AAGAGGGCAAGGTATTTACTCGTTGATCCATCGAGAGACGGCTAGCTACC
ATACGGTCGGGAAGAAGAAAACAATGACGAGCTTGAACATCAAG
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Coding sequence (CDS) from alignment at chr23:32435..33228-

>NO23G00080.1 ID=NO23G00080.1|Name=NO23G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at chr23:32435..33228- (Nannochloropsis oceanica)
ATGTTCACCAAACTCTTTAATAGCGGTAGTAAAAATGGCAACTCGAGCAA
GCCCTTCGAAGGGGACGTGGAGAGTCTGTGGTATTTAGACGGCAAGGCGT
ATGATTTGGGCAAGTTTGTCAAGATGCATCCAGGTGGCGCCGACGTCCTC
CTCGAGCTCCGAGGAAAAAATGGCACCTCTGCTTTTCATGATGCTCACGG
GACAAGTCCTTCCTCCGCCCCTCACAAGAAACTATTGCGGATGGAAGTGA
AGGGGGTGAGTGCGGAGGTCCTGGCGCTAAAATTCCCGAAGAGTGAGCAA
GTTGCGCCATAG
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Synonyms
Publications