NO22G02120, NO22G02120 (gene) Nannochloropsis oceanica

Overview
NameNO22G02120
Unique NameNO22G02120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1176
Alignment locationchr22:659356..660531 -

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Properties
Property NameValue
Descriptionglobal transcription factor group E2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:659356..660531 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027353NET_dom
Homology
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: XP_009013007.1 (hypothetical protein HELRODRAFT_74357 [Helobdella robusta] >ESO08985.1 hypothetical protein HELRODRAFT_74357 [Helobdella robusta])

HSP 1 Score: 66.2 bits (160), Expect = 9.900e-8
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            D ++P+T+DEKR L   I +LP EK  KV++IIQ++ P+L      E+E+D E L    LR+L+ +VASC+
Sbjct:  336 DKSKPMTYDEKRQLSLDINKLPGEKLGKVVNIIQSREPSLKDSNPDEIEIDFETLKPSTLRELEAYVASCL 406
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: CDQ79960.1 (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  542 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 612
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: XP_014016489.1 (PREDICTED: bromodomain-containing protein 3-like isoform X1 [Salmo salar] >XP_014016490.1 PREDICTED: bromodomain-containing protein 3-like isoform X1 [Salmo salar] >XP_014016491.1 PREDICTED: bromodomain-containing protein 3-like isoform X1 [Salmo salar])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  573 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 643
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: XP_014016492.1 (PREDICTED: bromodomain-containing protein 3-like isoform X2 [Salmo salar])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  568 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 638
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: XP_014016493.1 (PREDICTED: bromodomain-containing protein 3-like isoform X3 [Salmo salar])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  550 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 620
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: XP_014016494.1 (PREDICTED: bromodomain-containing protein 3-like isoform X4 [Salmo salar])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  545 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 615
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: XP_020361517.1 (bromodomain-containing protein 3-like isoform X4 [Oncorhynchus kisutch])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  547 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 617
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: XP_020361512.1 (bromodomain-containing protein 3-like isoform X1 [Oncorhynchus kisutch] >XP_020361513.1 bromodomain-containing protein 3-like isoform X1 [Oncorhynchus kisutch] >XP_020361514.1 bromodomain-containing protein 3-like isoform X1 [Oncorhynchus kisutch])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  575 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 645
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: XP_020361515.1 (bromodomain-containing protein 3-like isoform X2 [Oncorhynchus kisutch])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  570 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 640
[Close]
BLAST of NO22G02120 vs. NCBI_GenBank
Match: XP_020361516.1 (bromodomain-containing protein 3-like isoform X3 [Oncorhynchus kisutch])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  552 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 622
The following BLAST results are available for this feature:
BLAST of NO22G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009013007.19.900e-845.07hypothetical protein HELRODRAFT_74357 [Helobdella ... [more]
CDQ79960.11.700e-745.07unnamed protein product [Oncorhynchus mykiss][more]
XP_014016489.11.700e-745.07PREDICTED: bromodomain-containing protein 3-like i... [more]
XP_014016492.11.700e-745.07PREDICTED: bromodomain-containing protein 3-like i... [more]
XP_014016493.11.700e-745.07PREDICTED: bromodomain-containing protein 3-like i... [more]
XP_014016494.11.700e-745.07PREDICTED: bromodomain-containing protein 3-like i... [more]
XP_020361517.11.700e-745.07bromodomain-containing protein 3-like isoform X4 [... [more]
XP_020361512.11.700e-745.07bromodomain-containing protein 3-like isoform X1 [... [more]
XP_020361515.11.700e-745.07bromodomain-containing protein 3-like isoform X2 [... [more]
XP_020361516.11.700e-745.07bromodomain-containing protein 3-like isoform X3 [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR104ngnoR104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G02120.1NO22G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596132gene_7227Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G02120.1NO22G02120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G02120 ID=NO22G02120|Name=NO22G02120|organism=Nannochloropsis oceanica|type=gene|length=1176bp
ATGGCGGCAGCAGCAGCAGCAGCAGCTCCGAGgtggggagggagggaggg
agggagggagggaaggggaagagtcttgtcgtaagataccattacctcac
ctctgtaagtcaataaagcgccccagagtttccactcaccctccatccct
ccctccctcccctcctccctccccccttcctcagCTTCGATCCCACGCAG
CCCCTGACCCACGACGAGAAGAGGAATCTCCGCACCTCCATCGAGCGCCT
CCCCCCTGAGAAGGCCATGAAGGTTTTGAGCATCATCCAGgtacgacaaa
cacctttcttccctcccctcatccgtgcccttccctccctctctcaaacg
cccgccttcccgggagaaaatagatatttaagcctcgtccctcccctgac
tccctccctcccctccctccctcattccctccctcattccctccctccct
ccctccctccctctctccccccctcccgcgttccctacctccctccctcc
ctccctcccttgtagGCAAAGTGTCCGAACCTGCCCTTGGACGAGGACGG
CGAGGTGGAGGTAGACATGGAGCGTCTCGACACACCCGTGCTACGAGACT
TGCAGCGgtaggaagggagggaggaacagagggggggaagggagggaagg
aggggaggagggaccgagggacggagggagggagaaatcggtcatgttca
aagttatcttaataatatctatctaatataatatcatataatatcaatat
ctatctaatatcttcatcactttctccctcgctccttctcttcttcccca
accgtagTTTTGTCGCCTCGTGTGTGTCTTCCTCGACGGGAGGACGAGGA
CGGGGACGAGGGGGGGAAGGGGCGCCAGAGGCGGCGGTCGTGGTTCACGG
GGGGCAGGACGAGGACGAGGCGGTGTGGGAGGGGGAGGAGGAGGAGGAGG
AGGGATGGGGGGAAGGAGCACGACGATGGCCCAAgtacgtttaaactccc
tccctccctccctccctcccttccttcctgcattccatactcaccctcct
tctctgaaatctcagtaggctcacccctccctccctccctccctccctcc
ctcccccctccctgacagGCGACCATGTCTACGTTGGCCTACTCAGACGA
CGATTCGGACTCCGGGGGCTCTCTAG
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protein sequence of NO22G02120.1

>NO22G02120.1-protein ID=NO22G02120.1-protein|Name=NO22G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MAAAAAAAAPSFDPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCP
NLPLDEDGEVEVDMERLDTPVLRDLQRFVASCVSSSTGGRGRGRGGEGAP
EAAVVVHGGQDEDEAVWEGEEEEEEGWGEGARRWPKRPCLRWPTQTTIRT
PGAL*
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Synonyms
Publications