NO22G02120.1, NO22G02120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G02120.1
Unique NameNO22G02120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length465
Alignment locationchr22:659356..660531 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:659356..660531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G02120.1 vs.
Match: CDQ79960.1 (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 66.2 bits (160), Expect = 9.900e-8
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0 
Query:   13 DPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCPNLPLDEDGEVEVDMERLDTPVLRDLQRFVASCV 84
            +P+ P+++DEKR L   I RLP EK  +V+ IIQA+ P+L      E+E+D E L    LR+L+R+V SC+
Sbjct:  542 EPSLPMSYDEKRQLSLDINRLPGEKLGRVVHIIQAREPSLRDSNPDEIEIDFETLKPSTLRELERYVKSCL 612
The following BLAST results are available for this feature:
BLAST of NO22G02120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CDQ79960.19.900e-845.07unnamed protein product [Oncorhynchus mykiss][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G02120NO22G02120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G02120.1NO22G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G02120.1.cds1NO22G02120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02120.1.cds2NO22G02120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02120.1.cds3NO22G02120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02120.1.cds4NO22G02120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02120.1.cds5NO22G02120.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G02120.1 ID=NO22G02120.1|Name=NO22G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=465bp
ATGGCGGCAGCAGCAGCAGCAGCAGCTCCGAGCTTCGATCCCACGCAGCC
CCTGACCCACGACGAGAAGAGGAATCTCCGCACCTCCATCGAGCGCCTCC
CCCCTGAGAAGGCCATGAAGGTTTTGAGCATCATCCAGGCAAAGTGTCCG
AACCTGCCCTTGGACGAGGACGGCGAGGTGGAGGTAGACATGGAGCGTCT
CGACACACCCGTGCTACGAGACTTGCAGCGTTTTGTCGCCTCGTGTGTGT
CTTCCTCGACGGGAGGACGAGGACGGGGACGAGGGGGGGAAGGGGCGCCA
GAGGCGGCGGTCGTGGTTCACGGGGGGCAGGACGAGGACGAGGCGGTGTG
GGAGGGGGAGGAGGAGGAGGAGGAGGGATGGGGGGAAGGAGCACGACGAT
GGCCCAAGCGACCATGTCTACGTTGGCCTACTCAGACGACGATTCGGACT
CCGGGGGCTCTCTAG
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protein sequence of NO22G02120.1

>NO22G02120.1-protein ID=NO22G02120.1-protein|Name=NO22G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MAAAAAAAAPSFDPTQPLTHDEKRNLRTSIERLPPEKAMKVLSIIQAKCP
NLPLDEDGEVEVDMERLDTPVLRDLQRFVASCVSSSTGGRGRGRGGEGAP
EAAVVVHGGQDEDEAVWEGEEEEEEGWGEGARRWPKRPCLRWPTQTTIRT
PGAL*
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mRNA from alignment at chr22:659356..660531-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G02120.1 ID=NO22G02120.1|Name=NO22G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp|location=Sequence derived from alignment at chr22:659356..660531- (Nannochloropsis oceanica)
ATGGCGGCAGCAGCAGCAGCAGCAGCTCCGAGGTGGGGAGGGAGGGAGGG
AGGGAGGGAGGGAAGGGGAAGAGTCTTGTCGTAAGATACCATTACCTCAC
CTCTGTAAGTCAATAAAGCGCCCCAGAGTTTCCACTCACCCTCCATCCCT
CCCTCCCTCCCCTCCTCCCTCCCCCCTTCCTCAGCTTCGATCCCACGCAG
CCCCTGACCCACGACGAGAAGAGGAATCTCCGCACCTCCATCGAGCGCCT
CCCCCCTGAGAAGGCCATGAAGGTTTTGAGCATCATCCAGGTACGACAAA
CACCTTTCTTCCCTCCCCTCATCCGTGCCCTTCCCTCCCTCTCTCAAACG
CCCGCCTTCCCGGGAGAAAATAGATATTTAAGCCTCGTCCCTCCCCTGAC
TCCCTCCCTCCCCTCCCTCCCTCATTCCCTCCCTCATTCCCTCCCTCCCT
CCCTCCCTCCCTCTCTCCCCCCCTCCCGCGTTCCCTACCTCCCTCCCTCC
CTCCCTCCCTTGTAGGCAAAGTGTCCGAACCTGCCCTTGGACGAGGACGG
CGAGGTGGAGGTAGACATGGAGCGTCTCGACACACCCGTGCTACGAGACT
TGCAGCGGTAGGAAGGGAGGGAGGAACAGAGGGGGGGAAGGGAGGGAAGG
AGGGGAGGAGGGACCGAGGGACGGAGGGAGGGAGAAATCGGTCATGTTCA
AAGTTATCTTAATAATATCTATCTAATATAATATCATATAATATCAATAT
CTATCTAATATCTTCATCACTTTCTCCCTCGCTCCTTCTCTTCTTCCCCA
ACCGTAGTTTTGTCGCCTCGTGTGTGTCTTCCTCGACGGGAGGACGAGGA
CGGGGACGAGGGGGGGAAGGGGCGCCAGAGGCGGCGGTCGTGGTTCACGG
GGGGCAGGACGAGGACGAGGCGGTGTGGGAGGGGGAGGAGGAGGAGGAGG
AGGGATGGGGGGAAGGAGCACGACGATGGCCCAAGTACGTTTAAACTCCC
TCCCTCCCTCCCTCCCTCCCTTCCTTCCTGCATTCCATACTCACCCTCCT
TCTCTGAAATCTCAGTAGGCTCACCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCCCCTCCCTGACAGGCGACCATGTCTACGTTGGCCTACTCAGACGA
CGATTCGGACTCCGGGGGCTCTCTAG
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Coding sequence (CDS) from alignment at chr22:659356..660531-

>NO22G02120.1 ID=NO22G02120.1|Name=NO22G02120.1|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at chr22:659356..660531- (Nannochloropsis oceanica)
ATGGCGGCAGCAGCAGCAGCAGCAGCTCCGAGCTTCGATCCCACGCAGCC
CCTGACCCACGACGAGAAGAGGAATCTCCGCACCTCCATCGAGCGCCTCC
CCCCTGAGAAGGCCATGAAGGTTTTGAGCATCATCCAGGCAAAGTGTCCG
AACCTGCCCTTGGACGAGGACGGCGAGGTGGAGGTAGACATGGAGCGTCT
CGACACACCCGTGCTACGAGACTTGCAGCGTTTTGTCGCCTCGTGTGTGT
CTTCCTCGACGGGAGGACGAGGACGGGGACGAGGGGGGGAAGGGGCGCCA
GAGGCGGCGGTCGTGGTTCACGGGGGGCAGGACGAGGACGAGGCGGTGTG
GGAGGGGGAGGAGGAGGAGGAGGAGGGATGGGGGGAAGGAGCACGACGAT
GGCCCAAGCGACCATGTCTACGTTGGCCTACTCAGACGACGATTCGGACT
CCGGGGGCTCTCTAG
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Synonyms
Publications