NO22G02110, NO22G02110 (gene) Nannochloropsis oceanica

Overview
NameNO22G02110
Unique NameNO22G02110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2791
Alignment locationchr22:655513..658303 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:655513..658303 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029060PIN_domain-like
Homology
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BLAST of NO22G02110 vs. NCBI_GenBank
Match: XP_005855206.1 (hypothetical protein NGA_0073200 [Nannochloropsis gaditana CCMP526] >EKU21152.1 hypothetical protein NGA_0073200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 302.0 bits (772), Expect = 5.900e-78
Identity = 180/394 (45.69%), Postives = 233/394 (59.14%), Query Frame = 0 
Query:   43 WVYENVMAKRDMYYLGDYGPDVVAANRYFIQSFFIDYGIHTVWVHDGSFNPAKVATQMSRRAERVAPAADLISRLFACLRSAPRAWS---PNESFLTVAKEVSKGLKEMDCWMEGCTGCDDSLYMLLDELAAASQQVGGPSLTHVRTILEADAYIAAQCLEQGFDAVMSSDTDFLVLDCPWIPLDFVQHRSGPDSCPCKFVPKGRFSEVMYNAALQSLQPLLR---TVMFQGNYVGAHSLTGFRRLLPDLACLLGNDFFFPTDPLSGQSKGFVKKVTIPLIGVQPSDRMGE----------TKVPAV-VTVTCDLASHDKVQCARFLLVCLINGWVEEISGVLDLTGSCSATXXXXXXXXXXXXXXXXXXXXXXLAALLFPNAHRRLQGYLTAR 420
            W+ ++VM ++D++YLGDYG D VA  RYF+Q+FF+ + I T++VHDG +NPAK ATQ SRRA R   A DLI R+FA LR +    +    +ESFL +A  ++KGL++ D  +   TG   +LY+LLDEL A S   GGP +  V TI+EADAYIA  C+   + AV+SSD+DFLVLD PWIPL  +QHR  P +CPC +VP GRFSEV+Y  A  SL P LR    V  Q   +   SL GFR+LL DLA LLGNDF+   D  +G + G   +VT+ L G    + +G           + +P+  V +TC L   DKV CARFLLVCL NGWVEE  G L L+                            L +LLFP A R+   Y+ AR
Sbjct:    3 WILQDVMPRQDLHYLGDYGQDFVAVVRYFVQNFFLAHEIETLFVHDGGYNPAKAATQQSRRARRALLAGDLILRVFARLRESSETRNTEDTSESFLDLAHGLTKGLRKEDVRVAKGTGVTAALYLLLDELDATSHAQGGPRVRQVNTIMEADAYIARTCMRGAYAAVLSSDSDFLVLDTPWIPLQSIQHRYAPTACPCSWVPPGRFSEVLYALAWNSLVPFLRLAGMVTSQRPTIPHCSLAGFRKLLGDLATLLGNDFYSLAD--AGNAVG---QVTVRLTG--RGEALGRKDGGHCPPPPSCMPSTPVALTCKLT--DKVACARFLLVCLCNGWVEEPGGSLALS-----------------------QDSVPLPSLLFPQAPRQQAQYVRAR 364
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BLAST of NO22G02110 vs. NCBI_GenBank
Match: EWM20540.1 (hypothetical protein Naga_100683g2 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 2.900e-16
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 0 
Query:    1 MGVQRLWSWSKEKQQRDLLYEPTDLVDFRGKRIIIDAASFHHWVYENVMAKRDMYYLGDYGPDVVAANRYF 72
            MGV RL SWS EK Q DLLYE  DL DF GKR I+DAASF  W+ ++VM ++D++YLGDYG D VA  RYF
Sbjct:    1 MGVHRLTSWSHEKPQCDLLYEKRDLRDFSGKRFIVDAASFMFWILQDVMPRQDLHYLGDYGQDFVAVVRYF 71
The following BLAST results are available for this feature:
BLAST of NO22G02110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855206.15.900e-7845.69hypothetical protein NGA_0073200 [Nannochloropsis ... [more]
EWM20540.12.900e-1663.38hypothetical protein Naga_100683g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR104ngnoR104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G02110.1NO22G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596130gene_7226Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100683g2gene9866Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G02110.1NO22G02110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G02110 ID=NO22G02110|Name=NO22G02110|organism=Nannochloropsis oceanica|type=gene|length=2791bp
ATGGGGGTTCAACGACTTTGGAGTTGGAGCAAAGAAAAGgtaagcgcttg
ctccaccttgcatgtcggctccacgccccaccctccacatatctcccccc
tcgccccactcctcctccacccctccgctcctactcttcattctccctcc
ctcctaaaccagtcataaaggcatgtactatagctacagaataaagaaga
attttgctgcgtgcgcctcgcatatgacctcatgataataaaaccacaca
tgcatacagCAACAACGTGACCTCCTTTACGAGCCGACCGACCTCGTCGA
CTTCCGCGGCAAGCGCATCATAATTGATGCGGCTTCCTTCCATCATTGGG
TCTATGAGAATGTGATGGCAAAAAGAGACATGTACTACTTGGGAGATTAT
GGACCAGACGTTGTGGCGGCGAATCGCTACTTTATTCAGTCATTCTTTAT
CGACTATGGCATCCATACTGTGTGGGTACATGACGGGTCTTTCAATCCTG
CCAAAGTAGCGACTCAAATGTCCCGCCGTGCAGAACGAGTGGCTCCGGCC
GCGGACTTGATTAGTCGGCTCTTTGCCTGCTTGCGGAGCGCGCCCCGCGC
CTGGTCCCCAAATGAGTCCTTTCTCACGGTTGCCAAGGAAGTGAGCAAAG
GCTTGAAGGAAATGGACTGCTGGATGGAAGGTTGCACGGGCTGTGATGAT
TCTCTCTACATGCTTTTGGATGAGCTGGCAGCTGCAAGCCAGCAGGTAGG
CGGCCCGTCGCTGACACATGTCAGGACAATTCTTGAAGCGGATGCCTACA
TCGCAGCACAGTGCCTTGAGCAAGGCTTCGATGCCGTCATGTCCTCAGAT
ACTGACTTTTTGGTGTTGGACTGTCCCTGGATTCCTCTTGATTTCGTCCA
GCACCGCAGTGGGCCTGATTCCTGTCCCTGTAAGTTTGTCCCGAAGGGCC
GCTTCTCCGAAGTAATGTACAACGCGGCCCTGCAGAGCCTGCAGCCTTTG
CTGCGGACGGTCATGTTTCAAGGCAACTATGTGGGGGCGCATTCCTTAAC
AGGTTTTCGGCGGTTGTTGCCTGACCTGGCTTGTCTTCTCGGAAACGACT
TTTTCTTTCCCACGGATCCACTGTCGGGGCAAAGCAAGGGCTTTGTAAAG
AAGGTTACAATACCGCTGATCGGTGTGCAGCCGTCAGACAGAATGGGAGA
GACAAAGGTGCCTGCAGTTGTGACGGTGACTTGCGATCTCGCATCTCACG
ACAAGGTTCAATGTGCACGCTTTCTGCTTGTTTGCCTCATCAACGGATGG
GTCGAAGAAATCAGTGGGGTCCTGGATTTGACAGGCTCCTGCTCCGCTAC
GAGTTCTCCAAAATCTAAAAAACGGTCGTCTGCGTCAGAGTCTTCCTCGT
TCTCTTCATCTTCGCCCTTAGCTGCCCTCCTATTTCCAAATGCACACCGG
CGCCTCCAGGGGTATTTGACTGCTCGGGACCAGTACAAATTAGAGAGCAG
TATGGCCAAGAATCGAATGCCTACTATTCTCGTTGATGCTGGCATTGCGG
CACAGTACGCTACCTGTCGTTCAAGATCTCACTATGCAAGCTTCTTGTGT
CATAGTGGCGTTGATGATGACGATGGTGATGACAATGATGACGATGAAGA
AGATGAAGAAGACGAAGGGGAAGACGGAGAGGGGAAGGCGTCCAAAAGGG
GTACCGATTCGAAAGAGCTGACCGAAAACCCACGCAGCTGCACCCTGGCT
TTCCTCTTGCCAATGCAGCGATTTCAATTCCCCATGCTCAATCTGACATC
GCAGAGACAGATGATGTACGAGTTGTTGTTCTACCGGGCCCTCAAAGGGG
AGGAAACGGCCTTACAGCCAGGGATGATTTCTGTCGTTGAAGAATACGTG
CGCATCAACCAAAACACGGGGAAAGTGGATTTGCGGCACCCTTTCCGATC
AGTGAGAGTGGACTTGTTTTGCGAAGATGAAATAGAAGGCTCCAACGATA
TGGAAAGGAAGGACTGGCGGCTCAGCCAATCCAAGCGCGTAGAGCGCTAC
AAGCAACACGGCCCCAACTTTTATCTTCATCCGCTAGAGTCGCGCCTAGC
TTTTTTCCTTGCCCTCCTGGGTTATTCTCAAGGTCTAGATGGAGAATTAC
GGGATGCCGTTGACATTGTCATGCAGAAGACTCTGGAGGAAAAAGAAAGT
GGCGAAAATGAGCTTCGAGACGAGGTGCTCGCGTTTGTCCTCTCTTTGCG
GGTCCTCATCGTCGCCTACGGTGCGGACTCTGGCCTCTCTCTCTCCGATC
CTCCGCAACGGAACTACGACGCTTATCGCGCCTTGCTTTTTGCGGCAGCA
TCGACGCTGCTAAAATGGGGAGAAGAGATGATGCCAGTTTCCATTATTTT
TGATCCTACCGCCCGCGGTGTCCGTCCTTCCTACCCGTCATGGGTCACAG
ACGAAGAAGAAGGCGTCACACCAGCCGCACGTTTGCGTGGCATAGCGTTC
TTAATATGTTATCGAGTGTGTTTGCGTGATGTATTGGAATTGTCAGACAT
CCTTGGAAGAGTCCTGCATCTCCGCCGGCCCCTAGCTCTGGATCTGTCAC
ATATTTACGTGCAGCGGTTTGTGGGCGGAAAATGGAACGCATTAGAGCAG
AACACATCTGGAATAAATGAGGGCCGACTCCTGGACGTGGCGCGGGCGCT
GGAGCATGCAGTACTTTTGGGGATTTCAGACGAGATGGCGGTGTGGTATG
GCAAGGGAATAGCACAAGAAGAAAGCAAAAGAAAAAAGTAA
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protein sequence of NO22G02110.1

>NO22G02110.1-protein ID=NO22G02110.1-protein|Name=NO22G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=857bp
MGVQRLWSWSKEKQQRDLLYEPTDLVDFRGKRIIIDAASFHHWVYENVMA
KRDMYYLGDYGPDVVAANRYFIQSFFIDYGIHTVWVHDGSFNPAKVATQM
SRRAERVAPAADLISRLFACLRSAPRAWSPNESFLTVAKEVSKGLKEMDC
WMEGCTGCDDSLYMLLDELAAASQQVGGPSLTHVRTILEADAYIAAQCLE
QGFDAVMSSDTDFLVLDCPWIPLDFVQHRSGPDSCPCKFVPKGRFSEVMY
NAALQSLQPLLRTVMFQGNYVGAHSLTGFRRLLPDLACLLGNDFFFPTDP
LSGQSKGFVKKVTIPLIGVQPSDRMGETKVPAVVTVTCDLASHDKVQCAR
FLLVCLINGWVEEISGVLDLTGSCSATSSPKSKKRSSASESSSFSSSSPL
AALLFPNAHRRLQGYLTARDQYKLESSMAKNRMPTILVDAGIAAQYATCR
SRSHYASFLCHSGVDDDDGDDNDDDEEDEEDEGEDGEGKASKRGTDSKEL
TENPRSCTLAFLLPMQRFQFPMLNLTSQRQMMYELLFYRALKGEETALQP
GMISVVEEYVRINQNTGKVDLRHPFRSVRVDLFCEDEIEGSNDMERKDWR
LSQSKRVERYKQHGPNFYLHPLESRLAFFLALLGYSQGLDGELRDAVDIV
MQKTLEEKESGENELRDEVLAFVLSLRVLIVAYGADSGLSLSDPPQRNYD
AYRALLFAAASTLLKWGEEMMPVSIIFDPTARGVRPSYPSWVTDEEEGVT
PAARLRGIAFLICYRVCLRDVLELSDILGRVLHLRRPLALDLSHIYVQRF
VGGKWNALEQNTSGINEGRLLDVARALEHAVLLGISDEMAVWYGKGIAQE
ESKRKK*
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Synonyms
Publications