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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr22 | genome | chr22:655513..658303 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G02110.1 vs.
Match: XP_005855206.1 (hypothetical protein NGA_0073200 [Nannochloropsis gaditana CCMP526]; EKU21152.1 hypothetical protein NGA_0073200 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 305.8 bits (782), Expect = 4.100e-79 Identity = 183/396 (46.21%), Postives = 231/396 (58.33%), Query Frame = 0
Query: 43 WVYENVMAKRDMYYLGDYGPDVVAANRYFIQSFFIDYGIHTVWVHDGSFNPAKVATQMSRRAERVAPAADLISRLFACLRSAPRAWSP---NESFLTVAKEVSKGLKEMDCWMEGCTGCDDSLYMLLDELAAASQQVGGPSLTHVRTILEADAYIAAQCLEQGFDAVMSSDTDFLVLDCPWIPLDFVQHRSGPDSCPCKFVPKGRFSEVMYNAALQSLQPLLRT---VMFQGNYVGAHSLTGFRRLLPDLACLLGNDFFFPTDPLSGQSKGFVKKVTIPLIG-------------VQPSDRMGETKVPAVVTVTCDLASHDKVQCARFLLVCLINGWVEEISGVLDLTGSCSATSSPKSKKRSSASESSSFSSSSPLAALLFPNAHRRLQGYLTAR 420
W+ ++VM ++D++YLGDYG D VA RYF+Q+FF+ + I T++VHDG +NPAK ATQ SRRA R A DLI R+FA LR + + +ESFL +A ++KGL++ D + TG +LY+LLDEL A S GGP + V TI+EADAYIA C+ + AV+SSD+DFLVLD PWIPL +QHR P +CPC +VP GRFSEV+Y A SL P LR V Q + SL GFR+LL DLA LLGNDF+ D +G + G +VT+ L G P M T V +TC L DKV CARFLLVCL NGWVEE G L L+ S PL +LLFP A R+ Y+ AR
Sbjct: 3 WILQDVMPRQDLHYLGDYGQDFVAVVRYFVQNFFLAHEIETLFVHDGGYNPAKAATQQSRRARRALLAGDLILRVFARLRESSETRNTEDTSESFLDLAHGLTKGLRKEDVRVAKGTGVTAALYLLLDELDATSHAQGGPRVRQVNTIMEADAYIARTCMRGAYAAVLSSDSDFLVLDTPWIPLQSIQHRYAPTACPCSWVPPGRFSEVLYALAWNSLVPFLRLAGMVTSQRPTIPHCSLAGFRKLLGDLATLLGNDFYSLAD--AGNAVG---QVTVRLTGRGEALGRKDGGHCPPPPSCMPSTPV----ALTCKLT--DKVACARFLLVCLCNGWVEEPGGSLALS-----------------------QDSVPLPSLLFPQAPRQQAQYVRAR 364
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G02110.1 ID=NO22G02110.1|Name=NO22G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2571bp
ATGGGGGTTCAACGACTTTGGAGTTGGAGCAAAGAAAAGCAACAACGTGA
CCTCCTTTACGAGCCGACCGACCTCGTCGACTTCCGCGGCAAGCGCATCA
TAATTGATGCGGCTTCCTTCCATCATTGGGTCTATGAGAATGTGATGGCA
AAAAGAGACATGTACTACTTGGGAGATTATGGACCAGACGTTGTGGCGGC
GAATCGCTACTTTATTCAGTCATTCTTTATCGACTATGGCATCCATACTG
TGTGGGTACATGACGGGTCTTTCAATCCTGCCAAAGTAGCGACTCAAATG
TCCCGCCGTGCAGAACGAGTGGCTCCGGCCGCGGACTTGATTAGTCGGCT
CTTTGCCTGCTTGCGGAGCGCGCCCCGCGCCTGGTCCCCAAATGAGTCCT
TTCTCACGGTTGCCAAGGAAGTGAGCAAAGGCTTGAAGGAAATGGACTGC
TGGATGGAAGGTTGCACGGGCTGTGATGATTCTCTCTACATGCTTTTGGA
TGAGCTGGCAGCTGCAAGCCAGCAGGTAGGCGGCCCGTCGCTGACACATG
TCAGGACAATTCTTGAAGCGGATGCCTACATCGCAGCACAGTGCCTTGAG
CAAGGCTTCGATGCCGTCATGTCCTCAGATACTGACTTTTTGGTGTTGGA
CTGTCCCTGGATTCCTCTTGATTTCGTCCAGCACCGCAGTGGGCCTGATT
CCTGTCCCTGTAAGTTTGTCCCGAAGGGCCGCTTCTCCGAAGTAATGTAC
AACGCGGCCCTGCAGAGCCTGCAGCCTTTGCTGCGGACGGTCATGTTTCA
AGGCAACTATGTGGGGGCGCATTCCTTAACAGGTTTTCGGCGGTTGTTGC
CTGACCTGGCTTGTCTTCTCGGAAACGACTTTTTCTTTCCCACGGATCCA
CTGTCGGGGCAAAGCAAGGGCTTTGTAAAGAAGGTTACAATACCGCTGAT
CGGTGTGCAGCCGTCAGACAGAATGGGAGAGACAAAGGTGCCTGCAGTTG
TGACGGTGACTTGCGATCTCGCATCTCACGACAAGGTTCAATGTGCACGC
TTTCTGCTTGTTTGCCTCATCAACGGATGGGTCGAAGAAATCAGTGGGGT
CCTGGATTTGACAGGCTCCTGCTCCGCTACGAGTTCTCCAAAATCTAAAA
AACGGTCGTCTGCGTCAGAGTCTTCCTCGTTCTCTTCATCTTCGCCCTTA
GCTGCCCTCCTATTTCCAAATGCACACCGGCGCCTCCAGGGGTATTTGAC
TGCTCGGGACCAGTACAAATTAGAGAGCAGTATGGCCAAGAATCGAATGC
CTACTATTCTCGTTGATGCTGGCATTGCGGCACAGTACGCTACCTGTCGT
TCAAGATCTCACTATGCAAGCTTCTTGTGTCATAGTGGCGTTGATGATGA
CGATGGTGATGACAATGATGACGATGAAGAAGATGAAGAAGACGAAGGGG
AAGACGGAGAGGGGAAGGCGTCCAAAAGGGGTACCGATTCGAAAGAGCTG
ACCGAAAACCCACGCAGCTGCACCCTGGCTTTCCTCTTGCCAATGCAGCG
ATTTCAATTCCCCATGCTCAATCTGACATCGCAGAGACAGATGATGTACG
AGTTGTTGTTCTACCGGGCCCTCAAAGGGGAGGAAACGGCCTTACAGCCA
GGGATGATTTCTGTCGTTGAAGAATACGTGCGCATCAACCAAAACACGGG
GAAAGTGGATTTGCGGCACCCTTTCCGATCAGTGAGAGTGGACTTGTTTT
GCGAAGATGAAATAGAAGGCTCCAACGATATGGAAAGGAAGGACTGGCGG
CTCAGCCAATCCAAGCGCGTAGAGCGCTACAAGCAACACGGCCCCAACTT
TTATCTTCATCCGCTAGAGTCGCGCCTAGCTTTTTTCCTTGCCCTCCTGG
GTTATTCTCAAGGTCTAGATGGAGAATTACGGGATGCCGTTGACATTGTC
ATGCAGAAGACTCTGGAGGAAAAAGAAAGTGGCGAAAATGAGCTTCGAGA
CGAGGTGCTCGCGTTTGTCCTCTCTTTGCGGGTCCTCATCGTCGCCTACG
GTGCGGACTCTGGCCTCTCTCTCTCCGATCCTCCGCAACGGAACTACGAC
GCTTATCGCGCCTTGCTTTTTGCGGCAGCATCGACGCTGCTAAAATGGGG
AGAAGAGATGATGCCAGTTTCCATTATTTTTGATCCTACCGCCCGCGGTG
TCCGTCCTTCCTACCCGTCATGGGTCACAGACGAAGAAGAAGGCGTCACA
CCAGCCGCACGTTTGCGTGGCATAGCGTTCTTAATATGTTATCGAGTGTG
TTTGCGTGATGTATTGGAATTGTCAGACATCCTTGGAAGAGTCCTGCATC
TCCGCCGGCCCCTAGCTCTGGATCTGTCACATATTTACGTGCAGCGGTTT
GTGGGCGGAAAATGGAACGCATTAGAGCAGAACACATCTGGAATAAATGA
GGGCCGACTCCTGGACGTGGCGCGGGCGCTGGAGCATGCAGTACTTTTGG
GGATTTCAGACGAGATGGCGGTGTGGTATGGCAAGGGAATAGCACAAGAA
GAAAGCAAAAGAAAAAAGTAA back to topprotein sequence of NO22G02110.1 >NO22G02110.1-protein ID=NO22G02110.1-protein|Name=NO22G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=857bp
MGVQRLWSWSKEKQQRDLLYEPTDLVDFRGKRIIIDAASFHHWVYENVMA
KRDMYYLGDYGPDVVAANRYFIQSFFIDYGIHTVWVHDGSFNPAKVATQM
SRRAERVAPAADLISRLFACLRSAPRAWSPNESFLTVAKEVSKGLKEMDC
WMEGCTGCDDSLYMLLDELAAASQQVGGPSLTHVRTILEADAYIAAQCLE
QGFDAVMSSDTDFLVLDCPWIPLDFVQHRSGPDSCPCKFVPKGRFSEVMY
NAALQSLQPLLRTVMFQGNYVGAHSLTGFRRLLPDLACLLGNDFFFPTDP
LSGQSKGFVKKVTIPLIGVQPSDRMGETKVPAVVTVTCDLASHDKVQCAR
FLLVCLINGWVEEISGVLDLTGSCSATSSPKSKKRSSASESSSFSSSSPL
AALLFPNAHRRLQGYLTARDQYKLESSMAKNRMPTILVDAGIAAQYATCR
SRSHYASFLCHSGVDDDDGDDNDDDEEDEEDEGEDGEGKASKRGTDSKEL
TENPRSCTLAFLLPMQRFQFPMLNLTSQRQMMYELLFYRALKGEETALQP
GMISVVEEYVRINQNTGKVDLRHPFRSVRVDLFCEDEIEGSNDMERKDWR
LSQSKRVERYKQHGPNFYLHPLESRLAFFLALLGYSQGLDGELRDAVDIV
MQKTLEEKESGENELRDEVLAFVLSLRVLIVAYGADSGLSLSDPPQRNYD
AYRALLFAAASTLLKWGEEMMPVSIIFDPTARGVRPSYPSWVTDEEEGVT
PAARLRGIAFLICYRVCLRDVLELSDILGRVLHLRRPLALDLSHIYVQRF
VGGKWNALEQNTSGINEGRLLDVARALEHAVLLGISDEMAVWYGKGIAQE
ESKRKK* back to topmRNA from alignment at chr22:655513..658303+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G02110.1 ID=NO22G02110.1|Name=NO22G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2791bp|location=Sequence derived from alignment at chr22:655513..658303+ (Nannochloropsis oceanica)
ATGGGGGTTCAACGACTTTGGAGTTGGAGCAAAGAAAAGGTAAGCGCTTG
CTCCACCTTGCATGTCGGCTCCACGCCCCACCCTCCACATATCTCCCCCC
TCGCCCCACTCCTCCTCCACCCCTCCGCTCCTACTCTTCATTCTCCCTCC
CTCCTAAACCAGTCATAAAGGCATGTACTATAGCTACAGAATAAAGAAGA
ATTTTGCTGCGTGCGCCTCGCATATGACCTCATGATAATAAAACCACACA
TGCATACAGCAACAACGTGACCTCCTTTACGAGCCGACCGACCTCGTCGA
CTTCCGCGGCAAGCGCATCATAATTGATGCGGCTTCCTTCCATCATTGGG
TCTATGAGAATGTGATGGCAAAAAGAGACATGTACTACTTGGGAGATTAT
GGACCAGACGTTGTGGCGGCGAATCGCTACTTTATTCAGTCATTCTTTAT
CGACTATGGCATCCATACTGTGTGGGTACATGACGGGTCTTTCAATCCTG
CCAAAGTAGCGACTCAAATGTCCCGCCGTGCAGAACGAGTGGCTCCGGCC
GCGGACTTGATTAGTCGGCTCTTTGCCTGCTTGCGGAGCGCGCCCCGCGC
CTGGTCCCCAAATGAGTCCTTTCTCACGGTTGCCAAGGAAGTGAGCAAAG
GCTTGAAGGAAATGGACTGCTGGATGGAAGGTTGCACGGGCTGTGATGAT
TCTCTCTACATGCTTTTGGATGAGCTGGCAGCTGCAAGCCAGCAGGTAGG
CGGCCCGTCGCTGACACATGTCAGGACAATTCTTGAAGCGGATGCCTACA
TCGCAGCACAGTGCCTTGAGCAAGGCTTCGATGCCGTCATGTCCTCAGAT
ACTGACTTTTTGGTGTTGGACTGTCCCTGGATTCCTCTTGATTTCGTCCA
GCACCGCAGTGGGCCTGATTCCTGTCCCTGTAAGTTTGTCCCGAAGGGCC
GCTTCTCCGAAGTAATGTACAACGCGGCCCTGCAGAGCCTGCAGCCTTTG
CTGCGGACGGTCATGTTTCAAGGCAACTATGTGGGGGCGCATTCCTTAAC
AGGTTTTCGGCGGTTGTTGCCTGACCTGGCTTGTCTTCTCGGAAACGACT
TTTTCTTTCCCACGGATCCACTGTCGGGGCAAAGCAAGGGCTTTGTAAAG
AAGGTTACAATACCGCTGATCGGTGTGCAGCCGTCAGACAGAATGGGAGA
GACAAAGGTGCCTGCAGTTGTGACGGTGACTTGCGATCTCGCATCTCACG
ACAAGGTTCAATGTGCACGCTTTCTGCTTGTTTGCCTCATCAACGGATGG
GTCGAAGAAATCAGTGGGGTCCTGGATTTGACAGGCTCCTGCTCCGCTAC
GAGTTCTCCAAAATCTAAAAAACGGTCGTCTGCGTCAGAGTCTTCCTCGT
TCTCTTCATCTTCGCCCTTAGCTGCCCTCCTATTTCCAAATGCACACCGG
CGCCTCCAGGGGTATTTGACTGCTCGGGACCAGTACAAATTAGAGAGCAG
TATGGCCAAGAATCGAATGCCTACTATTCTCGTTGATGCTGGCATTGCGG
CACAGTACGCTACCTGTCGTTCAAGATCTCACTATGCAAGCTTCTTGTGT
CATAGTGGCGTTGATGATGACGATGGTGATGACAATGATGACGATGAAGA
AGATGAAGAAGACGAAGGGGAAGACGGAGAGGGGAAGGCGTCCAAAAGGG
GTACCGATTCGAAAGAGCTGACCGAAAACCCACGCAGCTGCACCCTGGCT
TTCCTCTTGCCAATGCAGCGATTTCAATTCCCCATGCTCAATCTGACATC
GCAGAGACAGATGATGTACGAGTTGTTGTTCTACCGGGCCCTCAAAGGGG
AGGAAACGGCCTTACAGCCAGGGATGATTTCTGTCGTTGAAGAATACGTG
CGCATCAACCAAAACACGGGGAAAGTGGATTTGCGGCACCCTTTCCGATC
AGTGAGAGTGGACTTGTTTTGCGAAGATGAAATAGAAGGCTCCAACGATA
TGGAAAGGAAGGACTGGCGGCTCAGCCAATCCAAGCGCGTAGAGCGCTAC
AAGCAACACGGCCCCAACTTTTATCTTCATCCGCTAGAGTCGCGCCTAGC
TTTTTTCCTTGCCCTCCTGGGTTATTCTCAAGGTCTAGATGGAGAATTAC
GGGATGCCGTTGACATTGTCATGCAGAAGACTCTGGAGGAAAAAGAAAGT
GGCGAAAATGAGCTTCGAGACGAGGTGCTCGCGTTTGTCCTCTCTTTGCG
GGTCCTCATCGTCGCCTACGGTGCGGACTCTGGCCTCTCTCTCTCCGATC
CTCCGCAACGGAACTACGACGCTTATCGCGCCTTGCTTTTTGCGGCAGCA
TCGACGCTGCTAAAATGGGGAGAAGAGATGATGCCAGTTTCCATTATTTT
TGATCCTACCGCCCGCGGTGTCCGTCCTTCCTACCCGTCATGGGTCACAG
ACGAAGAAGAAGGCGTCACACCAGCCGCACGTTTGCGTGGCATAGCGTTC
TTAATATGTTATCGAGTGTGTTTGCGTGATGTATTGGAATTGTCAGACAT
CCTTGGAAGAGTCCTGCATCTCCGCCGGCCCCTAGCTCTGGATCTGTCAC
ATATTTACGTGCAGCGGTTTGTGGGCGGAAAATGGAACGCATTAGAGCAG
AACACATCTGGAATAAATGAGGGCCGACTCCTGGACGTGGCGCGGGCGCT
GGAGCATGCAGTACTTTTGGGGATTTCAGACGAGATGGCGGTGTGGTATG
GCAAGGGAATAGCACAAGAAGAAAGCAAAAGAAAAAAGTAA back to topCoding sequence (CDS) from alignment at chr22:655513..658303+ >NO22G02110.1 ID=NO22G02110.1|Name=NO22G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=2571bp|location=Sequence derived from alignment at chr22:655513..658303+ (Nannochloropsis oceanica)
ATGGGGGTTCAACGACTTTGGAGTTGGAGCAAAGAAAAGCAACAACGTGA
CCTCCTTTACGAGCCGACCGACCTCGTCGACTTCCGCGGCAAGCGCATCA
TAATTGATGCGGCTTCCTTCCATCATTGGGTCTATGAGAATGTGATGGCA
AAAAGAGACATGTACTACTTGGGAGATTATGGACCAGACGTTGTGGCGGC
GAATCGCTACTTTATTCAGTCATTCTTTATCGACTATGGCATCCATACTG
TGTGGGTACATGACGGGTCTTTCAATCCTGCCAAAGTAGCGACTCAAATG
TCCCGCCGTGCAGAACGAGTGGCTCCGGCCGCGGACTTGATTAGTCGGCT
CTTTGCCTGCTTGCGGAGCGCGCCCCGCGCCTGGTCCCCAAATGAGTCCT
TTCTCACGGTTGCCAAGGAAGTGAGCAAAGGCTTGAAGGAAATGGACTGC
TGGATGGAAGGTTGCACGGGCTGTGATGATTCTCTCTACATGCTTTTGGA
TGAGCTGGCAGCTGCAAGCCAGCAGGTAGGCGGCCCGTCGCTGACACATG
TCAGGACAATTCTTGAAGCGGATGCCTACATCGCAGCACAGTGCCTTGAG
CAAGGCTTCGATGCCGTCATGTCCTCAGATACTGACTTTTTGGTGTTGGA
CTGTCCCTGGATTCCTCTTGATTTCGTCCAGCACCGCAGTGGGCCTGATT
CCTGTCCCTGTAAGTTTGTCCCGAAGGGCCGCTTCTCCGAAGTAATGTAC
AACGCGGCCCTGCAGAGCCTGCAGCCTTTGCTGCGGACGGTCATGTTTCA
AGGCAACTATGTGGGGGCGCATTCCTTAACAGGTTTTCGGCGGTTGTTGC
CTGACCTGGCTTGTCTTCTCGGAAACGACTTTTTCTTTCCCACGGATCCA
CTGTCGGGGCAAAGCAAGGGCTTTGTAAAGAAGGTTACAATACCGCTGAT
CGGTGTGCAGCCGTCAGACAGAATGGGAGAGACAAAGGTGCCTGCAGTTG
TGACGGTGACTTGCGATCTCGCATCTCACGACAAGGTTCAATGTGCACGC
TTTCTGCTTGTTTGCCTCATCAACGGATGGGTCGAAGAAATCAGTGGGGT
CCTGGATTTGACAGGCTCCTGCTCCGCTACGAGTTCTCCAAAATCTAAAA
AACGGTCGTCTGCGTCAGAGTCTTCCTCGTTCTCTTCATCTTCGCCCTTA
GCTGCCCTCCTATTTCCAAATGCACACCGGCGCCTCCAGGGGTATTTGAC
TGCTCGGGACCAGTACAAATTAGAGAGCAGTATGGCCAAGAATCGAATGC
CTACTATTCTCGTTGATGCTGGCATTGCGGCACAGTACGCTACCTGTCGT
TCAAGATCTCACTATGCAAGCTTCTTGTGTCATAGTGGCGTTGATGATGA
CGATGGTGATGACAATGATGACGATGAAGAAGATGAAGAAGACGAAGGGG
AAGACGGAGAGGGGAAGGCGTCCAAAAGGGGTACCGATTCGAAAGAGCTG
ACCGAAAACCCACGCAGCTGCACCCTGGCTTTCCTCTTGCCAATGCAGCG
ATTTCAATTCCCCATGCTCAATCTGACATCGCAGAGACAGATGATGTACG
AGTTGTTGTTCTACCGGGCCCTCAAAGGGGAGGAAACGGCCTTACAGCCA
GGGATGATTTCTGTCGTTGAAGAATACGTGCGCATCAACCAAAACACGGG
GAAAGTGGATTTGCGGCACCCTTTCCGATCAGTGAGAGTGGACTTGTTTT
GCGAAGATGAAATAGAAGGCTCCAACGATATGGAAAGGAAGGACTGGCGG
CTCAGCCAATCCAAGCGCGTAGAGCGCTACAAGCAACACGGCCCCAACTT
TTATCTTCATCCGCTAGAGTCGCGCCTAGCTTTTTTCCTTGCCCTCCTGG
GTTATTCTCAAGGTCTAGATGGAGAATTACGGGATGCCGTTGACATTGTC
ATGCAGAAGACTCTGGAGGAAAAAGAAAGTGGCGAAAATGAGCTTCGAGA
CGAGGTGCTCGCGTTTGTCCTCTCTTTGCGGGTCCTCATCGTCGCCTACG
GTGCGGACTCTGGCCTCTCTCTCTCCGATCCTCCGCAACGGAACTACGAC
GCTTATCGCGCCTTGCTTTTTGCGGCAGCATCGACGCTGCTAAAATGGGG
AGAAGAGATGATGCCAGTTTCCATTATTTTTGATCCTACCGCCCGCGGTG
TCCGTCCTTCCTACCCGTCATGGGTCACAGACGAAGAAGAAGGCGTCACA
CCAGCCGCACGTTTGCGTGGCATAGCGTTCTTAATATGTTATCGAGTGTG
TTTGCGTGATGTATTGGAATTGTCAGACATCCTTGGAAGAGTCCTGCATC
TCCGCCGGCCCCTAGCTCTGGATCTGTCACATATTTACGTGCAGCGGTTT
GTGGGCGGAAAATGGAACGCATTAGAGCAGAACACATCTGGAATAAATGA
GGGCCGACTCCTGGACGTGGCGCGGGCGCTGGAGCATGCAGTACTTTTGG
GGATTTCAGACGAGATGGCGGTGTGGTATGGCAAGGGAATAGCACAAGAA
GAAAGCAAAAGAAAAAAGTAA back to top
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