NO22G02080, NO22G02080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO22G02080 vs. NCBI_GenBank
Match: EWM20545.1 (50s ribosomal protein l4, partial [Nannochloropsis gaditana]) HSP 1 Score: 250.0 bits (637), Expect = 1.200e-62 Identity = 128/166 (77.11%), Postives = 149/166 (89.76%), Query Frame = 0 Query: 114 LPSNLYLADASVLTRYKPVPLETLIQRKEQMEGIIDPAALTLPVRRALGAGVGGEEEEEQMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGK 280 +PSNL LAD SVLT +KPV +E +++KE+MEGIIDP LTLPVR+++G +EEEE ++LD+RVFGVPVRKDIIHR+VTWQRAK+R+G+A TKRVGDIRGSTKKLRPQKG+GRARAGKKHAAQFRGG KAHGPV RDFSFKLN+KVRALGVRMALSAKAREG+ Sbjct: 202 IPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGD--VNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365
BLAST of NO22G02080 vs. NCBI_GenBank
Match: GBD42060.1 (50S ribosomal protein L4 [bacterium HR39]) HSP 1 Score: 173.3 bits (438), Expect = 1.400e-39 Identity = 103/224 (45.98%), Postives = 137/224 (61.16%), Query Frame = 0 Query: 153 LTLPVRRALGAGVGGEEEEEQMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAALREEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGANVIDIVAHDTLIVSKEAVAMLTARLR 377 + +PV LG E+ + + LD VF PVR DI+HRVV WQ AK+R G AST+ G++ + KK QKG+GRAR G ++A F GG AHGP RD+S L KKVR LG++ ALS + REG++VV+D L +PKTR+L LR G E VL + + ERN ALA RN+P + LPQ+GANV DI+ H+ L++++EA L RLR Sbjct: 1 MQVPVLNLLG------EQVDTIELDDGVFAAPVRPDILHRVVVWQLAKRRRGTASTRTRGEVNRTKKKWYRQKGTGRARHGSRNAPIFVGGGVAHGPKPRDWSIDLPKKVRRLGLKCALSDRMREGRLVVLDRAELEQPKTRILAERLRAFGWE------------SVLFVTEDVPERNFALAARNIPRVQVLPQIGANVYDILRHEHLVLTREAAKQLEERLR 206
BLAST of NO22G02080 vs. NCBI_GenBank
Match: OWM85580.1 (hypothetical protein CDL15_Pgr029003 [Punica granatum]) HSP 1 Score: 171.8 bits (434), Expect = 4.100e-39 Identity = 104/247 (42.11%), Postives = 148/247 (59.92%), Query Frame = 0 Query: 133 PLETLIQR----KEQMEGIIDPAALTLPVRRALGAGVGGEEEEEQMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAALREEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGANVIDIVAHDTLIVSKEAVAMLTARL 376 PLE L +R E+ G+ L +PV L E++ M L VF VP+RKDI+HRVV WQ AK++ G STK + ++ G+ +K QKG+GRAR G QFRGG HGP R + K+NKKVR LG+++ALSA+A EGK++V+D L LP KT+ + + ++ +M KKVLL+DG ++ N+ LA +NL Y LP +G NV I+ HDTL++S++AV + R+ Sbjct: 84 PLELLSKRNVIVSERQIGLCQD--LVIPVTNFL------NEDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWQQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKINKKVRRLGLKVALSARAGEGKLLVLDDLELPTHKTKNIVSYVK-----------QMDNTKKVLLVDGGPIDENLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNRIVERM 311
BLAST of NO22G02080 vs. NCBI_GenBank
Match: XP_019156465.1 (PREDICTED: uncharacterized protein LOC109153134 [Ipomoea nil] >XP_019156466.1 PREDICTED: uncharacterized protein LOC109153134 [Ipomoea nil]) HSP 1 Score: 169.5 bits (428), Expect = 2.000e-38 Identity = 92/207 (44.44%), Postives = 131/207 (63.29%), Query Frame = 0 Query: 169 EEEEQMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAALREEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGANVIDIVAHDTLIVSKEAVAMLTARL 376 E++ M L VF VP+RKDIIHRVV WQ AK++ G STK + ++ G+ +K PQKG+GRAR G QFRGG HGP R + KLNKKVR LG+++ALSA+A EGK+++ + + LP KT+ + + + +M KKVLL+DG + N+ LA +N+ Y LP +G NV I+ HDTL++S++AV + R+ Sbjct: 102 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGRARHGTLRGPQFRGGAAMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLMIFEDMELPSHKTKNIVSYAQ-----------KMENAKKVLLVDGGPINENLKLATQNIHYVNVLPSIGLNVYSILLHDTLVMSRDAVNRIVERM 297
BLAST of NO22G02080 vs. NCBI_GenBank
Match: WP_002725426.1 (MULTISPECIES: 50S ribosomal protein L4 [Phaeospirillum] >CCG39741.1 50S ribosomal subunit protein L4 [Phaeospirillum molischianum DSM 120] >EPY01581.1 50S ribosomal protein L4 [Phaeospirillum fulvum MGU-K5] >SEH34126.1 LSU ribosomal protein L4P [Phaeospirillum fulvum]) HSP 1 Score: 169.1 bits (427), Expect = 2.700e-38 Identity = 100/204 (49.02%), Postives = 128/204 (62.75%), Query Frame = 0 Query: 173 QMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAALREEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGANVIDIVAHDTLIVSKEAVAMLTARLR 377 ++ L VFG+PVR DI+ R+V WQ AK+R G TK + +I G+TKK QKG GRAR G + QFRGG GPV R + L KKVR L ++ ALSAKA +GK+ V+DA ++ PKTR L A L G VL+IDG A++ N ALA RN+PY LPQ GANV DI+ HDTL+++K+AV L ARL+ Sbjct: 15 EIELAETVFGLPVRTDILARMVNWQLAKRRSGNHKTKGIKEISGTTKKPFAQKGGGRARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKTALSAKAGDGKLFVLDAANVATPKTRELAARLNALG------------WSSVLVIDGAAVDDNFALASRNIPYVDVLPQAGANVYDILRHDTLVLTKDAVEALEARLK 206
BLAST of NO22G02080 vs. NCBI_GenBank
Match: XP_022132910.1 (uncharacterized protein LOC111005636 isoform X2 [Momordica charantia]) HSP 1 Score: 169.1 bits (427), Expect = 2.700e-38 Identity = 93/207 (44.93%), Postives = 130/207 (62.80%), Query Frame = 0 Query: 169 EEEEQMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAALREEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGANVIDIVAHDTLIVSKEAVAMLTARL 376 E++ M L VF VP+RKDIIHRVV WQ AK++ G STK + ++ G+ +K QKG+GRAR G QFRGG HGP R +FKLNKKVR LG+++ALSA+A EGK++V D L +P KT+ + EM + KK+LL+DG ++ + LA +NL Y LP +G NV I+ HDTL++S++A+ + R+ Sbjct: 106 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRARHGTLRGPQFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFDNLDVPTHKTKNIVNYF-----------NEMEKAKKLLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAIERIVTRM 301
BLAST of NO22G02080 vs. NCBI_GenBank
Match: XP_022132909.1 (uncharacterized protein LOC111005636 isoform X1 [Momordica charantia]) HSP 1 Score: 169.1 bits (427), Expect = 2.700e-38 Identity = 93/207 (44.93%), Postives = 130/207 (62.80%), Query Frame = 0 Query: 169 EEEEQMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAALREEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGANVIDIVAHDTLIVSKEAVAMLTARL 376 E++ M L VF VP+RKDIIHRVV WQ AK++ G STK + ++ G+ +K QKG+GRAR G QFRGG HGP R +FKLNKKVR LG+++ALSA+A EGK++V D L +P KT+ + EM + KK+LL+DG ++ + LA +NL Y LP +G NV I+ HDTL++S++A+ + R+ Sbjct: 114 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRARHGTLRGPQFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFDNLDVPTHKTKNIVNYF-----------NEMEKAKKLLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAIERIVTRM 309
BLAST of NO22G02080 vs. NCBI_GenBank
Match: WP_011385498.1 (50S ribosomal protein L4 [Magnetospirillum magneticum] >Q2W2J2.1 RecName: Full=50S ribosomal protein L4 >BAE51933.1 Ribosomal protein L4 [Magnetospirillum magneticum AMB-1]) HSP 1 Score: 169.1 bits (427), Expect = 2.700e-38 Identity = 100/204 (49.02%), Postives = 127/204 (62.25%), Query Frame = 0 Query: 173 QMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAALREEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGANVIDIVAHDTLIVSKEAVAMLTARLR 377 ++ L +FGVPVR DI+ R V WQ AK++ G TK + +I G+TKK QKG GRAR G +AQFRGG GPV R + L KKVR L ++ ALSAK +GK++VVDA S PKT+ L A L + GL VL IDG A++ N ALA RN+PY LP GANV DI+ DTL+++K+AVA L ARL+ Sbjct: 15 EIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPFAQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIVVDAASAGSPKTKDLAARLGKLGL------------SSVLFIDGAAVDGNFALASRNIPYVDVLPTQGANVYDILRRDTLVLTKDAVAALEARLK 206
BLAST of NO22G02080 vs. NCBI_GenBank
Match: PKI57374.1 (hypothetical protein CRG98_022219 [Punica granatum]) HSP 1 Score: 168.7 bits (426), Expect = 3.500e-38 Identity = 92/202 (45.54%), Postives = 130/202 (64.36%), Query Frame = 0 Query: 174 MSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAALREEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGANVIDIVAHDTLIVSKEAVAMLTARL 376 M L VF VP+RKDI+HRVV WQ AK++ G STK + ++ G+ +K QKG+GRAR G QFRGG HGP R + K+NKKVR LG+++ALSA+A EGK++V+D L LP KT+ + + ++ +M KKVLL+DG ++ N+ LA +NL Y LP +G NV I+ HDTL++S++AV + R+ Sbjct: 1 MVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWQQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKINKKVRRLGLKVALSARAGEGKLLVLDDLELPTHKTKNIVSYVK-----------QMDNTKKVLLVDGGPIDENLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNRIVERM 191
BLAST of NO22G02080 vs. NCBI_GenBank
Match: WP_008615456.1 (50S ribosomal protein L4 [Magnetospirillum caucaseum] >EME70956.1 50S ribosomal protein L4 [Magnetospirillum caucaseum]) HSP 1 Score: 168.3 bits (425), Expect = 4.500e-38 Identity = 98/204 (48.04%), Postives = 129/204 (63.24%), Query Frame = 0 Query: 173 QMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAALREEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGANVIDIVAHDTLIVSKEAVAMLTARLR 377 ++ L +FG+PVR DI+ R V WQ AK++ G TK + +I G+TKK QKG GRAR G +AQFRGG GPV R + L KKVR L ++ ALSAKA +GK++VVD+ + PKT+ L A L + GL VL IDG A++ N ALA RN+PY LPQ GANV DI+ +TL+++K+AVA L ARL+ Sbjct: 15 EIELADEIFGLPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPFAQKGGGRARQGSLRSAQFRGGATIFGPVVRSHAHDLPKKVRKLALKTALSAKAADGKLIVVDSAAAGSPKTKDLAARLGKLGL------------SSVLFIDGSAVDGNFALASRNIPYVDVLPQQGANVYDILRRETLVLTKDAVAALEARLK 206 The following BLAST results are available for this feature:
BLAST of NO22G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO22G02080 ID=NO22G02080|Name=NO22G02080|organism=Nannochloropsis oceanica|type=gene|length=3653bpback to top protein sequence of NO22G02080.1 >NO22G02080.1-protein ID=NO22G02080.1-protein|Name=NO22G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bpback to top Synonyms
Publications
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