NO22G02080.1, NO22G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G02080.1
Unique NameNO22G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2604
Alignment locationchr22:645500..649152 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:645500..649152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G02080.1 vs.
Match: EWM20545.1 (50s ribosomal protein l4, partial [Nannochloropsis gaditana])

HSP 1 Score: 273.9 bits (699), Expect = 7.700e-70
Identity = 164/255 (64.31%), Postives = 198/255 (77.65%), Query Frame = 0 
Query:   34 SSLPSSSGSSSSSSSSIRTSPRKGNIPSTNIVLSPSLLRHFARISVSSP---------SSSFSTNAREATPPPPPPPPPPSSSFSSSSVLPSNLYLADASVLTRYKPVPLETLIQRKEQMEGIIDPAALTLPVRRALGAGVGGEEEEEQMSLDARVFGVPVRKDIIHRVVTWQRAKKRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPVQRDFSFKLNKKVRALGVRMALSAKAREGK 280
            SSL  +   +S++ S+IR  PR G+    ++ L P+LL+  ARI   S          SSS  T+A   +PPPPPPPPPP SS + S  +PSNL LAD SVLT +KPV +E  +++KE+MEGIIDP  LTLPVR+++G     +EEEE ++LD+RVFGVPVRKDIIHR+VTWQRAK+R+G+A TKRVGDIRGSTKKLRPQKG+GRARAGKKHAAQFRGG KAHGPV RDFSFKLN+KVRALGVRMALSAKAREG+
Sbjct:  120 SSLSCTRHCNSTAKSAIRL-PRNGS----SLRLPPTLLQRVARIRFLSSLLPSIGARSSSSLHTSAEHTSPPPPPPPPPPPSSSTLS--IPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDV--NQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365
The following BLAST results are available for this feature:
BLAST of NO22G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20545.17.700e-7064.3150s ribosomal protein l4, partial [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G02080NO22G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G02080.1NO22G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G02080.1.cds1NO22G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02080.1.cds2NO22G02080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02080.1.cds3NO22G02080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02080.1.cds4NO22G02080.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02080.1.cds5NO22G02080.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02080.1.cds6NO22G02080.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G02080.1 ID=NO22G02080.1|Name=NO22G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2604bp
CATTCAAATTTTTTATCGAATCGACGGGACAAATATGGCCCACAGGTGGC
ACGTTTCGTGCCTCGTGTACTGGAAAATGCATCAGAATCGAACGTTCGGG
TAGTGCAAAGTTCAAAGGTGTGGATGGTTCTCAGGCCAACAAGTCTTCCT
CCCGCTAAGATTTGCCAGTGAAAACCCCTGTCATAGCCGCTCACCAACTC
AGACCAGATATGGGGAAGCATAAGAAACATTTTATTGTTGGAAGGCTTCC
ACTCGTATGTCATCCTGTGATGTGGTGAAGGTTGCATGCGATAGTAATGG
GTAGTACTGGTCCTGAGAAGAAACCGAGAAACTTCCCAAACTATTTTCAA
TAATTAAATATCTCTATCACAACATAGGCCAGTGTTTCAAGGCATTGGCA
AGAAAAAAACTGATAAACAAGGGACCTTCTCCGTGAGGCCGTGTCGTATT
ATTAATTTTCATTAAAAAAAACAGATGGGCTCGCGCAGAAAAAAGAAACA
CTCGCGCAGTCATCAAGCCTGAACGTATGCAGTAAGATGGAGCTAGAAGG
CTGCTTGTACCGGTGCCCCGTATGTCTCGCTCTCGTTCAAATACACCTGT
GCGGACAGCGCATCTTCATCCCTGTGTGTGGGATATGCCGGCGTGGCTTT
GCACGGACGACGAGGCCTGTAATCACCTCCATAAACCCACCAAGGCACGC
AAGAGGAGATACATCCCTTCCTCCTCCCACTATCACATCATCCAAACAAT
GACCCACGTACTCCAACATGCAACACAGCGCTCACATCCACCCCTAAATG
CTGTGCCAGCTCCTTGCCCGGACAAGCCGTACGGCAGGGGGTCGCGTGGT
AGGGGTTGGAGTCACGCCTTGCTCCTGCACTCGCGCGGCCTCCTTCTCCT
CCCTTCCCTCCAGCAGTGGCAGCAGCAGCAGCAGCAGCAGCAGCATTAGG
ACGTCGCCAAGAAAAGGGAACATTCCCAGCACCAATATAGTCCTCTCCCC
TTCCCTCCTGCGACACTTTGCCAGAATAAGCGTGTCCTCTCCCTCCTCTT
CCTTTTCCACCAACGCCCGCGAAGCCACCCCTCCTCCTCCCCCTCCTCCC
CCACCTCCCTCCTCCTCCTTTTCCTCTTCCTCCGTCCTCCCCTCCAACCT
CTACCTGGCCGACGCCTCAGTCTTGACCCGATATAAGCCCGTGCCTCTCG
AGACGCTCATTCAGAGAAAAGAGCAAATGGAAGGCATCATCGACCCGGCA
GCACTGACGTTGCCGGTTCGCAGGGCATTAGGAGCAGGAGTCGGAGGGGA
AGAAGAAGAAGAGCAAATGAGCTTGGATGCACGCGTATTCGGCGTCCCTG
TTCGCAAGGACATCATCCACCGGGTCGTTACGTGGCAACGGGCGAAGAAA
CGCCTCGGCCTTGCCTCTACCAAGAGGGTGGGTGACATCCGGGGGTCCAC
AAAAAAACTTCGGCCTCAGAAGGGGAGCGGACGGGCGCGTGCAGGAAAGA
AACACGCTGCCCAGTTTCGCGGTGGGATGAAGGCCCACGGACCCGTCCAA
CGCGATTTCTCCTTTAAGCTTAACAAGAAAGTGAGGGCACTCGGCGTCCG
CATGGCCCTCTCGGCCAAGGCGCGGGAAGGCAAGATAGTCGTCGTCGACG
CCCTCTCTCTTCCGGAACCCAAGACTCGCCTGCTCGAAGCCGCCCTAAGG
GAGGAGGGCCTGGAGGAGGAGGCGGAGGAGGGTGAGATGAGGAGGATGAA
GAAGGTCCTGCTCATTGATGGCGAGGCCCTGGAACGAAACATGGCCCTGG
CAGTGCGTAACCTCCCCTACGCCCGAGGGCTACCGCAGCTGGGCGCCAAT
GTCATCGACATCGTGGCACACGACACCTTGATCGTAAGCAAGGAAGCAGT
CGCTATGCTGACCGCGCGCCTGCGCCCGTAGGGTTGTCGGGAGGGATGAC
AAGAGGGAGGAAGGGAACGAGGGAGGGAGAGATGGAATAGAGGCAACACG
AAGTGGAAAAAGGACAAGAAATGACACGACAGTATTCCTTTGTGATACTG
AGTCTCGAGTGCATGAGATGTTACGTGCCCGTTATGGTGCCTTGTCATTT
GGCGGAGACTCACTTACCCCTCCAGCTTACTGATTGACTCGTACACATCC
TACACTACATGTGCTTCAGGCAGTGCCCGTTCTCGTCATTTACACACATG
TGACACGTGAAGACTTCACGAGTGTCCAAGATAAACATTTCGCACTGCTT
ACGTTTGGTGTAACAAGACGGGGTCGCGGCTCCTATCCCGACATAGAATA
GGGTCCAGGAAAACAGTGATCATGAAGGCTCTCTGGTCTTCTAATGCGTG
CGATGCATAATACGATGACGTGAATGCAAGGGACAAGGGCAAATGCTTTG
GGTGTGATTTAAAAGAAAAAAGAAGGCCATGGGCCATCGAGAGGAGGGAC
GAAGGCTGGCTACTGAGCAGCTGAATGAGGAGACCACACATGCGTAACAC
GACTCCAATAAAAGCATGATACAAACACAAAGCTCTTGCACGACCAGCGT
GCATATTTGCGTCCTTGGTAGATTCATGGACGATAGTTGTTGTGAACATA
ATCT
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protein sequence of NO22G02080.1

>NO22G02080.1-protein ID=NO22G02080.1-protein|Name=NO22G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MLCQLLARTSRTAGGRVVGVGVTPCSCTRAASFSSLPSSSGSSSSSSSSI
RTSPRKGNIPSTNIVLSPSLLRHFARISVSSPSSSFSTNAREATPPPPPP
PPPPSSSFSSSSVLPSNLYLADASVLTRYKPVPLETLIQRKEQMEGIIDP
AALTLPVRRALGAGVGGEEEEEQMSLDARVFGVPVRKDIIHRVVTWQRAK
KRLGLASTKRVGDIRGSTKKLRPQKGSGRARAGKKHAAQFRGGMKAHGPV
QRDFSFKLNKKVRALGVRMALSAKAREGKIVVVDALSLPEPKTRLLEAAL
REEGLEEEAEEGEMRRMKKVLLIDGEALERNMALAVRNLPYARGLPQLGA
NVIDIVAHDTLIVSKEAVAMLTARLRP*
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mRNA from alignment at chr22:645500..649152+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G02080.1 ID=NO22G02080.1|Name=NO22G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=3653bp|location=Sequence derived from alignment at chr22:645500..649152+ (Nannochloropsis oceanica)
CATTCAAATTTTTTATCGAATCGACGGGACAAATATGGCCCACAGGTGGC
ACGTTTCGTGCCTCGTGTACTGGAAAATGCATCAGAATCGAACGTTCGGG
TAGTGCAAAGTTCAAAGGTGTGGATGGTTCTCAGGCCAACAAGTCTTCCT
CCCGCTAAGATTTGCCAGTGAAAACCCCTGTCATAGCCGCTCACCAACTC
AGACCAGATATGGGGAAGCATAAGAAACATTTTATTGTTGGAAGGCTTCC
ACTCGTATGTCATCCTGTGATGTGGTGAAGGTTGCATGCGATAGTAATGG
GTAGTACTGGTCCTGAGAAGAAACCGAGAAACTTCCCAAACTATTTTCAA
TAATTAAATATCTCTATCACAACATAGGCCAGTGTTTCAAGGCATTGGCA
AGAAAAAAACTGATAAACAAGGGACCTTCTCCGTGAGGCCGTGTCGTATT
ATTAATTTTCATTAAAAAAAACAGATGGGCTCGCGCAGAAAAAAGAAACA
CTCGCGCAGTCATCAAGCCTGAACGTATGCAGTAAGATGGAGCTAGAAGG
CTGCTTGTACCGGTGCCCCGTATGTCTCGCTCTCGTTCAAATACACCTGT
GCGGACAGCGCATCTTCATCCCTGTGTGTGGGATATGCCGGCGTGGCTTT
GCACGGACGACGAGGCCTGTAATCACCTCCATAAACCCACCAAGGCACGC
AAGAGGAGATACATCCCTTCCTCCTCCCACTATCACATCATCCAAACAAT
GACCCACGTACTCCAACATGCAACACAGCGCTCACATCCACCCCTAAATG
CTGTGCCAGCTCCTTGCCCGGACAAGCCGTACGGCAGGGGGTCGCGTGGT
AGGGGTTGGAGTCACGCCTTGCTCCTGCACTCGCGCGGCCTCCTTCTCCT
CCCTTCCCTCCAGCAGTGGCAGCAGCAGCAGCAGCAGCAGCAGCATTAGG
ACGTCGCCAAGAAAAGGGAACATTCCCAGCACCAATATAGTCCTCTCCCC
TTCCCTCCTGCGACACTTTGCCAGAATAAGCGTGTCCTCTCCCTCCTCTT
CCTTTTCCACCAACGCCCGCGAAGCCACCCCTCCTCCTCCCCCTCCTCCC
CCACCTCCCTCCTCCTCCTTTTCCTCTTCCTCCGTCCTCCCCTCCAACCT
CTACCTGGCCGACGCCTCAGTCTTGACCCGATATAAGCCCGTGCCTCTCG
AGACGCTCATTCAGAGAAAAGAGCAAATGGAAGGCATCATCGACCCGGCA
GCACTGACGTTGCCGGTTCGCAGGGCATTAGGAGCAGGAGTCGGAGGGGA
AGAAGAAGAAGAGCAAATGAGCTTGGATGCACGGTGAGTCATTGATATAG
AATGGAAAAGAAAAGGGGGTGGAGGACAAGGGGAGGGGGGCGATTGGGGT
GGAAGGAAAGTACAGCGGGCGAACCATCTGACCAATATACATTCCCCCCC
CATCCCTCCCTCCCTTCCTCCCTTCCTCCTTCCCTCCCTCCCTCTCTTCC
TTCCTTCTTTGGCAGCGTATTCGGCGTCCCTGTTCGCAAGGACATCATCC
ACCGGGTCGTTACGTGGCAACGGGCGAAGAAACGCCTCGGCCTTGCCTCT
ACCAAGAGGGTGGGTGACATCCGGGGGTCCACAAAAAAACTTCGGCCTCA
GAAGGGGAGCGGACGGGCGCGTGCAGGAAAGAAACAGTGAGTCTGAACAG
AGGGAAGGAGGGAGGGAGAAAGGGAGAGAGGGAGCAAGTGAGCAAGGCAA
AGGAAAGTTAAAGAGTTCCTCCATCATTCATCCTAAACCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTAGCGCTGCCCAGTTTCGCGGTGG
GATGAAGGCCCACGGACCCGTCCAACGCGATTTCTCCTTTAAGCTTAACA
AGAAAGTGAGGGCACTCGGCGTCCGCATGGCCCTCTCGGCCAAGGCGCGG
GAAGGTGAGGAGGGGAGGGAGGGAGGGAGGGAGGAAGGGAAGGGGAGGGT
TGTGCAGACAAGGCGCGGGAAGGCAAGAGATGCCTCCCTTCCTCTTTCCC
ATCCTCTCTATCCGTCCCTCCCTCAGGCGAACTACTCCTGTTAGGCATCT
CTCCTGAACCTTCCCCTTTCTTTGCCTCTTACCACCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCTTTT
CCCCCGTTAGACACGTTCCTGCTTATCGCATGTCTCTATAATCGCTCCTT
ACTCACATCCATCCATCCCTCCCTCCCTCCCTCCGTCGCTCCCTTCCTCC
CCCCCTAGGCAAGATAGTCGTCGTCGACGCCCTCTCTCTTCCGGAACCCA
AGACTCGCCTGCTCGAAGCCGCCCTAAGGGAGGAGGGCCTGGAGGAGGAG
GCGGAGGAGGGTGAGATGAGGAGGATGAAGAAGGTCCTGCTCATTGATGG
TACGTGCCCGCAGAATGGGATGCCCCTCCTTCCCTCCTTCCCTCCCTCCC
TCCCTCCCTCTCTCCTGACTTCCGGGTTTTTTTCATCTAACAAGGGCGAT
GTGAAACAGAGTCTCCCTTTCCCTTCCTTCCTCCTTCTTCCCTTTCCTCC
CTCTCCCTATCGCCTTCACTCCCGGGCTCACTCCTTCCCTCCTTCCTTCC
CCCCCTCCCTCAGGCGAGGCCCTGGAACGAAACATGGCCCTGGCAGTGCG
TAACCTCCCCTACGCCCGAGGGCTACCGCAGCTGGTGAGTGATTGAAGGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGATGCGTAAGTTTCCAG
TTTTTTGTGGATCTCCTTGAGTAGTAGGAGTAATCCTACCCTCCCTCCCT
TCCTCCCTCCCTCCCTATCTCTTTTCCTCTTGTCCTTCAGGGCGCCAATG
TCATCGACATCGTGGCACACGACACCTTGATCGTAAGCAAGGAAGCAGTC
GCTATGCTGACCGCGCGCCTGCGCCCGTAGGGTTGTCGGGAGGGATGACA
AGAGGGAGGAAGGGAACGAGGGAGGGAGAGATGGAATAGAGGCAACACGA
AGTGGAAAAAGGACAAGAAATGACACGACAGTATTCCTTTGTGATACTGA
GTCTCGAGTGCATGAGATGTTACGTGCCCGTTATGGTGCCTTGTCATTTG
GCGGAGACTCACTTACCCCTCCAGCTTACTGATTGACTCGTACACATCCT
ACACTACATGTGCTTCAGGCAGTGCCCGTTCTCGTCATTTACACACATGT
GACACGTGAAGACTTCACGAGTGTCCAAGATAAACATTTCGCACTGCTTA
CGTTTGGTGTAACAAGACGGGGTCGCGGCTCCTATCCCGACATAGAATAG
GGTCCAGGAAAACAGTGATCATGAAGGCTCTCTGGTCTTCTAATGCGTGC
GATGCATAATACGATGACGTGAATGCAAGGGACAAGGGCAAATGCTTTGG
GTGTGATTTAAAAGAAAAAAGAAGGCCATGGGCCATCGAGAGGAGGGACG
AAGGCTGGCTACTGAGCAGCTGAATGAGGAGACCACACATGCGTAACACG
ACTCCAATAAAAGCATGATACAAACACAAAGCTCTTGCACGACCAGCGTG
CATATTTGCGTCCTTGGTAGATTCATGGACGATAGTTGTTGTGAACATAA
TCT
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Coding sequence (CDS) from alignment at chr22:645500..649152+

>NO22G02080.1 ID=NO22G02080.1|Name=NO22G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr22:645500..649152+ (Nannochloropsis oceanica)
ATGCTGTGCCAGCTCCTTGCCCGGACAAGCCGTACGGCAGGGGGTCGCGT
GGTAGGGGTTGGAGTCACGCCTTGCTCCTGCACTCGCGCGGCCTCCTTCT
CCTCCCTTCCCTCCAGCAGTGGCAGCAGCAGCAGCAGCAGCAGCAGCATT
AGGACGTCGCCAAGAAAAGGGAACATTCCCAGCACCAATATAGTCCTCTC
CCCTTCCCTCCTGCGACACTTTGCCAGAATAAGCGTGTCCTCTCCCTCCT
CTTCCTTTTCCACCAACGCCCGCGAAGCCACCCCTCCTCCTCCCCCTCCT
CCCCCACCTCCCTCCTCCTCCTTTTCCTCTTCCTCCGTCCTCCCCTCCAA
CCTCTACCTGGCCGACGCCTCAGTCTTGACCCGATATAAGCCCGTGCCTC
TCGAGACGCTCATTCAGAGAAAAGAGCAAATGGAAGGCATCATCGACCCG
GCAGCACTGACGTTGCCGGTTCGCAGGGCATTAGGAGCAGGAGTCGGAGG
GGAAGAAGAAGAAGAGCAAATGAGCTTGGATGCACGCGTATTCGGCGTCC
CTGTTCGCAAGGACATCATCCACCGGGTCGTTACGTGGCAACGGGCGAAG
AAACGCCTCGGCCTTGCCTCTACCAAGAGGGTGGGTGACATCCGGGGGTC
CACAAAAAAACTTCGGCCTCAGAAGGGGAGCGGACGGGCGCGTGCAGGAA
AGAAACACGCTGCCCAGTTTCGCGGTGGGATGAAGGCCCACGGACCCGTC
CAACGCGATTTCTCCTTTAAGCTTAACAAGAAAGTGAGGGCACTCGGCGT
CCGCATGGCCCTCTCGGCCAAGGCGCGGGAAGGCAAGATAGTCGTCGTCG
ACGCCCTCTCTCTTCCGGAACCCAAGACTCGCCTGCTCGAAGCCGCCCTA
AGGGAGGAGGGCCTGGAGGAGGAGGCGGAGGAGGGTGAGATGAGGAGGAT
GAAGAAGGTCCTGCTCATTGATGGCGAGGCCCTGGAACGAAACATGGCCC
TGGCAGTGCGTAACCTCCCCTACGCCCGAGGGCTACCGCAGCTGGGCGCC
AATGTCATCGACATCGTGGCACACGACACCTTGATCGTAAGCAAGGAAGC
AGTCGCTATGCTGACCGCGCGCCTGCGCCCGTAG
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Synonyms
Publications