NO22G02000, NO22G02000 (gene) Nannochloropsis oceanica

Overview
NameNO22G02000
Unique NameNO22G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2362
Alignment locationchr22:604844..617164 -

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Properties
Property NameValue
Descriptionc-Myc-binding protein homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:604844..617164 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003713transcription coactivator activity
GO:0140110transcription regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR026060AMY1
Homology
[Close]
BLAST of NO22G02000 vs. NCBI_GenBank
Match: CBN77061.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 110.5 bits (275), Expect = 3.000e-21
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 0 
Query:    1 MSNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALKSVCQDLRLQVEELTR 80
            MSN+ +P+SKKEEFR+YLEKSGVI+ALTKVLVGLYEEPERP NAVDYIK+YMGAP+ VD EA       +RLQ EE  R
Sbjct:    1 MSNYQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRYMGAPTGVDAEA-------MRLQNEEFKR 72
[Close]
BLAST of NO22G02000 vs. NCBI_GenBank
Match: XP_002180381.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47789.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 107.1 bits (266), Expect = 3.300e-20
Identity = 49/85 (57.65%), Postives = 72/85 (84.71%), Query Frame = 0 
Query:    2 SNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKK 87
            +N  S  SKK+EFR+YLEKSGV++ALTKVLVGLYEEP+RP+NA+DY+K+Y+GAPS VD++ +K    +L++Q+E++ +Q  EL++
Sbjct:    9 NNSNSDFSKKDEFRRYLEKSGVLDALTKVLVGLYEEPDRPNNALDYMKRYLGAPSAVDIDGIKQENSELKIQIEKMKKQLAELQE 93
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BLAST of NO22G02000 vs. NCBI_GenBank
Match: GAY05261.1 (Hypothetical protein PINS_013070 [Pythium insidiosum])

HSP 1 Score: 105.9 bits (263), Expect = 7.400e-20
Identity = 49/85 (57.65%), Postives = 71/85 (83.53%), Query Frame = 0 
Query:    6 SPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEMAS 91
            +P SKKEEFR+YLEKSGV++ALTKVLVGLYEE ++P+NAVDYIK++MGAP+ VD++AL++  ++L+ +  EL +  +EL K + +
Sbjct:    3 TPDSKKEEFRKYLEKSGVVDALTKVLVGLYEESDKPANAVDYIKRFMGAPTGVDIDALRAENEELKKKNAELIKTIEELNKRLTT 87
[Close]
BLAST of NO22G02000 vs. NCBI_GenBank
Match: EKC22099.1 (C-Myc-binding protein [Crassostrea gigas])

HSP 1 Score: 105.5 bits (262), Expect = 9.700e-20
Identity = 51/83 (61.45%), Postives = 69/83 (83.13%), Query Frame = 0 
Query:    5 VSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGA--PSNVDVEALKSVCQDLRLQVEELTRQNQELK 86
            +   SK+EEFR+YLEK+GV++ALTKVLVGLYEEPE+P+NA+D++K+++GA  P   DVEALK    +LR +VE+LT +NQELK
Sbjct:    7 IGADSKREEFRRYLEKAGVLDALTKVLVGLYEEPEKPNNALDFLKQHLGASGPETADVEALKLEVTELRQKVEQLTEENQELK 89
[Close]
BLAST of NO22G02000 vs. NCBI_GenBank
Match: XP_009033259.1 (hypothetical protein AURANDRAFT_59855 [Aureococcus anophagefferens] >EGB12182.1 hypothetical protein AURANDRAFT_59855 [Aureococcus anophagefferens])

HSP 1 Score: 105.1 bits (261), Expect = 1.300e-19
Identity = 49/59 (83.05%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:    6 SPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALK 65
            +P SKKEEFR+YLEKSGVI+ALTKVLVGLYEEPERP NAVDYIK+YMGAP+ +DVEAL+
Sbjct:    5 TPDSKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRYMGAPTGIDVEALR 63
[Close]
BLAST of NO22G02000 vs. NCBI_GenBank
Match: XP_008901754.1 (hypothetical protein PPTG_08784 [Phytophthora parasitica INRA-310] >ETI52374.1 hypothetical protein F443_04465 [Phytophthora parasitica P1569] >ETK92261.1 hypothetical protein L915_04338 [Phytophthora parasitica] >ETL45645.1 hypothetical protein L916_04302 [Phytophthora parasitica] >ETL98820.1 hypothetical protein L917_04182 [Phytophthora parasitica] >ETM51985.1 hypothetical protein L914_04283 [Phytophthora parasitica] >ETN12708.1 hypothetical protein PPTG_08784 [Phytophthora parasitica INRA-310] >ETO81147.1 hypothetical protein F444_04485 [Phytophthora parasitica P1976] >ETP22199.1 hypothetical protein F441_04434 [Phytophthora parasitica CJ01A1] >ETP50096.1 hypothetical protein F442_04497 [Phytophthora parasitica P10297])

HSP 1 Score: 104.8 bits (260), Expect = 1.700e-19
Identity = 48/85 (56.47%), Postives = 70/85 (82.35%), Query Frame = 0 
Query:    6 SPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEMAS 91
            +P SKKEEFR+YLEKSGV++ALTKVLVGLYEE ++P NAVDY+K++MGAP+ +DV+AL++  ++L+ +  EL +  +EL K + +
Sbjct:    8 TPDSKKEEFRKYLEKSGVVDALTKVLVGLYEEADKPPNAVDYVKRFMGAPTGIDVDALRAENEELKKKNAELIKTIEELNKRLTT 92
[Close]
BLAST of NO22G02000 vs. NCBI_GenBank
Match: XP_009522570.1 (hypothetical protein PHYSODRAFT_497648 [Phytophthora sojae] >EGZ19853.1 hypothetical protein PHYSODRAFT_497648 [Phytophthora sojae])

HSP 1 Score: 104.4 bits (259), Expect = 2.200e-19
Identity = 48/87 (55.17%), Postives = 71/87 (81.61%), Query Frame = 0 
Query:    2 SNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEM 89
            + + +P SKKEEFR+YLEKSGV++ALTKVLVGLYEE ++P NAVDY+K++MGAP+ +DV+AL++  ++L+ +  EL +  +EL K +
Sbjct:    4 ATYQTPDSKKEEFRKYLEKSGVVDALTKVLVGLYEEADKPPNAVDYVKRFMGAPTGIDVDALRAENEELKKKNAELIKTIEELNKRV 90
[Close]
BLAST of NO22G02000 vs. NCBI_GenBank
Match: XP_024575853.1 (c-myc-binding [Plasmopara halstedii] >CEG39484.1 c-myc-binding [Plasmopara halstedii])

HSP 1 Score: 104.4 bits (259), Expect = 2.200e-19
Identity = 48/89 (53.93%), Postives = 72/89 (80.90%), Query Frame = 0 
Query:    2 SNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEMAS 91
            + + +P SKKEEFR+YLEKSGV++ALTKVLVGLYEE ++P NAVDY+K++MGAP+ +DV+AL++  ++L+ +  EL +  +EL K + +
Sbjct:    4 ATYQTPDSKKEEFRKYLEKSGVVDALTKVLVGLYEESDKPPNAVDYVKRFMGAPTGIDVDALRAENEELKKKNAELIQTIEELNKRLTT 92
[Close]
BLAST of NO22G02000 vs. NCBI_GenBank
Match: POM58266.1 (Associate of Myc 1 domain containing hypothetical protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 104.0 bits (258), Expect = 2.800e-19
Identity = 48/89 (53.93%), Postives = 71/89 (79.78%), Query Frame = 0 
Query:    2 SNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEMAS 91
            + + +P SKKEEFR+YLEKSGV++ALTKVLVGLYEE ++P NAVDY+K++MGAP+ +DV+AL++  ++L+ +  EL +   EL K + +
Sbjct:    4 ATYQTPDSKKEEFRKYLEKSGVVDALTKVLVGLYEEADKPPNAVDYVKRFMGAPTGIDVDALRAENEELKKKNAELIKTIDELNKRLTT 92
[Close]
BLAST of NO22G02000 vs. NCBI_GenBank
Match: CCI45858.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 102.8 bits (255), Expect = 6.300e-19
Identity = 47/85 (55.29%), Postives = 72/85 (84.71%), Query Frame = 0 
Query:    6 SPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEMAS 91
            +P++KKEEFR+YLEKSGV++ALTKVLVGLYE  ++PSNAVDY+K+++GAP+ VD++AL++  ++L+ +  EL +  +EL K ++S
Sbjct:   15 TPEAKKEEFRKYLEKSGVVDALTKVLVGLYEVNDKPSNAVDYLKRFLGAPTGVDIDALRTENEELKKKNAELIQTIEELNKRLSS 99
The following BLAST results are available for this feature:
BLAST of NO22G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN77061.13.000e-2172.15conserved unknown protein [Ectocarpus siliculosus][more]
XP_002180381.13.300e-2057.65predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAY05261.17.400e-2057.65Hypothetical protein PINS_013070 [Pythium insidios... [more]
EKC22099.19.700e-2061.45C-Myc-binding protein [Crassostrea gigas][more]
XP_009033259.11.300e-1983.05hypothetical protein AURANDRAFT_59855 [Aureococcus... [more]
XP_008901754.11.700e-1956.47hypothetical protein PPTG_08784 [Phytophthora para... [more]
XP_009522570.12.200e-1955.17hypothetical protein PHYSODRAFT_497648 [Phytophtho... [more]
XP_024575853.12.200e-1953.93c-myc-binding [Plasmopara halstedii] >CEG39484.1 c... [more]
POM58266.12.800e-1953.93Associate of Myc 1 domain containing hypothetical ... [more]
CCI45858.16.300e-1955.29unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G02000.4NO22G02000.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G02000.3NO22G02000.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G02000.2NO22G02000.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G02000.1NO22G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G02000.4NO22G02000.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G02000.3NO22G02000.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G02000.2NO22G02000.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G02000.1NO22G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G02000 ID=NO22G02000|Name=NO22G02000|organism=Nannochloropsis oceanica|type=gene|length=2362bp
GCCCCGTAAGAGTGCAATACCTGTGAGATTAGGAGAAAAGGTCAGCTCGT
GGATGGATTCTAGGGGTCATCCGCGTGCGGTAAGTCGCACGGGGTAGGAA
AATCGAGTCGGTGGAGATAGCTGTAAGTGGGACAAGGCCCGTGGGGTGGA
AGCCGTCGACTGGAAGCAATATTAACGTTTCAGGATAACGATGACAGCAC
AGCCGGAAGGACGAGGGCAGGAGGAGTGGGTAGGTGCCACAGGATTGTTG
AGAAGGCTGTGCGCTGTATGCATGTGCAGAGCATAGCAAATGAAAACGAA
GGGGATACGTATCGATCGATCTTCCTCGGTTCTTGTGTTTAATCCCACTG
CAAACCATGCTGCCGCGGCATTGCATCCCCCTGCACGTCCTATAGACGGA
GACGAAGGGGATCGTCGTGCGTGGCTGCGTGTATGTGTCTTGGTGTTGTA
TGCCTTGTCTTAATCACCATCTCCTTGTCGCTGAAAGACATGTCCTCCGG
CCCGTTGATGCATCTCCCGTTCCATCGTTGAGAGAAGAAAATTTCAAGAC
AAAAAGCAGCAGCATGCGTGCTCCTCCGAAATCCCAGGTACACACGCAAA
CGCGTCTCACCATACACGCTGACCACAGCCCTTGCTTACATAGgtaggtg
gtcgctctttcaatttaatgcctggtcgccttgctcgtccttttttacct
aatcgcccccggacttgagccgctgctctctcaacatcttacagatagac
tgcgtggctcgtattccacatgcgtacatttacccactcctgcaaccccc
cttacactcaccccgacagTGCGCTTGGTGAGACTATCCTTTCCTGCAAG
CCGCGCGCCAGAGAGGGTGAGAGAAATACCAAATAGCACGGGAGACGAAA
GAGGAGGTGAACCAGCACAAGCAACAGCAACATCAGAATTGCGGCAGGCA
CAAAGATGAGCAATCACGTTgtgagtttctcgttgatttaatcgatctgg
atatgcacacatggagatgactgagtgcgcggttggaagggcccctttca
ccaattccccctccctccctccctccctcaccccttccctccctccctcc
ctccctccctccctccttccctcccttccttcactccccctcctatctct
ccgcagTCACCCCAGTCGAAGAAGGAGGAATTTCGTCAGTACTTGGAGAA
GAGCGGCGTCATTGAGGCATTGACAAAAGgtaagacggtggggcgagagc
gcggaggaggaaggaaggataaagaagaaagggatggtgactgttcagga
taagtagtcgttataacgcaacccctcccctcttgctatccctttcatct
tccacctctcgtccttgagatgacacgaatcatgtctgtgcatgttcgtt
tgcgaccattgcacgattcaattgcgatctcactcttcgcaagccgctag
tgaacaaacacaatgagtccataagtcagtcatgagtcattttcctctcc
cttcctccctccctccctccctccctccctccctccagTCCTGGTTGGCC
TCTACGAAGAGCCCGAACGGCCTTCCAACGCCGTGGATTACATCAAGAAG
TATATGGGCGCACCTAGCAATGTGGACGTGGAGGCCCTGAAGgtagggag
ggagggagggagggagggagggagggaaggagggtgcgcatagtagacct
cggattttcttgtcattcctgtctagacattttacacctctgtcacatgc
ctctctcacgtctttaatcccttccttccctccctccgtccctccgtccc
tccgtccttccctccctccctccctctctcccgccctccctccctctctt
gccctccagTCGGTTTGTCAGGACCTGCGGCTGCAAGTGGAAGAGCTGAC
ACGGCAAAACCAAGAGCTCAAGAAGGAGGTAGGGAGAGTGGGAGGGAGGG
CGGGAAGGAGGGAGGCAGGAAGGTCCGGTGAGGATCCTGATGGAGACGCT
CCATTTAAAGGTAAGGTATGAAAAGTTGGAGTTAGGCAAGGAGGAAGGGA
AGGGGAAAGGGAAGGGCAACTTTGTCTTGAAGGTGTCTTTCCACTTATTT
CTTTGGTCCTGCACGTCACACTTATAGATGGCGAGCAGCACAGCCACGGG
TACCGCATTGGGGAGCGGTTGAGGAGAGAAGGATAGAGAGAAATAGAAGC
GTCATCCACCTAGAATGCTCTTCTTCTCGTTGCCTCTCTCTGTCACTCTG
TATGTACGATGTATTCTCCGCAAAAACACAATCCGGGAAGGAAGTAGAGT
AGAAAGACGAGGAAGCCGGGAATGACGACACAAAAGGAATAAAAATTATG
TCCTACAGAGGA
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protein sequence of NO22G02000.4

>NO22G02000.4-protein ID=NO22G02000.4-protein|Name=NO22G02000.4|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MSNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKK
YMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEVGRVGGRAGRREA
GRSGEDPDGDAPFKGKV*
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protein sequence of NO22G02000.3

>NO22G02000.3-protein ID=NO22G02000.3-protein|Name=NO22G02000.3|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKK
YMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEMASSTATGTALGS
G*
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protein sequence of NO22G02000.2

>NO22G02000.2-protein ID=NO22G02000.2-protein|Name=NO22G02000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MSNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKK
YMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEVGRVGGRAGRREA
GRSGEDPDGDAPFKGKV*
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protein sequence of NO22G02000.1

>NO22G02000.1-protein ID=NO22G02000.1-protein|Name=NO22G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKK
YMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEMASSTATGTALGS
G*
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Synonyms
Publications