NO22G02000.2, NO22G02000.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G02000.2
Unique NameNO22G02000.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1474
Alignment locationchr22:604844..607205 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:604844..607205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G02000.2 vs.
Match: CBN77061.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.0 bits (297), Expect = 9.800e-24
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 0 
Query:    1 MSNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKKYMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEV 89
            MSN+ +P+SKKEEFR+YLEKSGVI+ALTKVLVGLYEEPERP NAVDYIK+YMGAP+ VD EA       +RLQ EE  R+N+EL+ ++
Sbjct:    1 MSNYQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRYMGAPTGVDAEA-------MRLQNEEFKRENEELRSKL 81
The following BLAST results are available for this feature:
BLAST of NO22G02000.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77061.19.800e-2468.18conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G02000NO22G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G02000.2NO22G02000.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G02000.2.cds1NO22G02000.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02000.2.cds2NO22G02000.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02000.2.cds3NO22G02000.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02000.2.cds4NO22G02000.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G02000.2 ID=NO22G02000.2|Name=NO22G02000.2|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp
GCCCCGTAAGAGTGCAATACCTGTGAGATTAGGAGAAAAGGTCAGCTCGT
GGATGGATTCTAGGGGTCATCCGCGTGCGGTAAGTCGCACGGGGTAGGAA
AATCGAGTCGGTGGAGATAGCTGTAAGTGGGACAAGGCCCGTGGGGTGGA
AGCCGTCGACTGGAAGCAATATTAACGTTTCAGGATAACGATGACAGCAC
AGCCGGAAGGACGAGGGCAGGAGGAGTGGGTAGGTGCCACAGGATTGTTG
AGAAGGCTGTGCGCTGTATGCATGTGCAGAGCATAGCAAATGAAAACGAA
GGGGATACGTATCGATCGATCTTCCTCGGTTCTTGTGTTTAATCCCACTG
CAAACCATGCTGCCGCGGCATTGCATCCCCCTGCACGTCCTATAGACGGA
GACGAAGGGGATCGTCGTGCGTGGCTGCGTGTATGTGTCTTGGTGTTGTA
TGCCTTGTCTTAATCACCATCTCCTTGTCGCTGAAAGACATGTCCTCCGG
CCCGTTGATGCATCTCCCGTTCCATCGTTGAGAGAAGAAAATTTCAAGAC
AAAAAGCAGCAGCATGCGTGCTCCTCCGAAATCCCAGGTACACACGCAAA
CGCGTCTCACCATACACGCTGACCACAGCCCTTGCTTACATAGTGCGCTT
GGTGAGACTATCCTTTCCTGCAAGCCGCGCGCCAGAGAGGGTGAGAGAAA
TACCAAATAGCACGGGAGACGAAAGAGGAGGTGAACCAGCACAAGCAACA
GCAACATCAGAATTGCGGCAGGCACAAAGATGAGCAATCACGTTTCACCC
CAGTCGAAGAAGGAGGAATTTCGTCAGTACTTGGAGAAGAGCGGCGTCAT
TGAGGCATTGACAAAAGTCCTGGTTGGCCTCTACGAAGAGCCCGAACGGC
CTTCCAACGCCGTGGATTACATCAAGAAGTATATGGGCGCACCTAGCAAT
GTGGACGTGGAGGCCCTGAAGTCGGTTTGTCAGGACCTGCGGCTGCAAGT
GGAAGAGCTGACACGGCAAAACCAAGAGCTCAAGAAGGAGGTAGGGAGAG
TGGGAGGGAGGGCGGGAAGGAGGGAGGCAGGAAGGTCCGGTGAGGATCCT
GATGGAGACGCTCCATTTAAAGGTAAGGTATGAAAAGTTGGAGTTAGGCA
AGGAGGAAGGGAAGGGGAAAGGGAAGGGCAACTTTGTCTTGAAGGTGTCT
TTCCACTTATTTCTTTGGTCCTGCACGTCACACTTATAGATGGCGAGCAG
CACAGCCACGGGTACCGCATTGGGGAGCGGTTGAGGAGAGAAGGATAGAG
AGAAATAGAAGCGTCATCCACCTAGAATGCTCTTCTTCTCGTTGCCTCTC
TCTGTCACTCTGTATGTACGATGTATTCTCCGCAAAAACACAATCCGGGA
AGGAAGTAGAGTAGAAAGACGAGGAAGCCGGGAATGACGACACAAAAGGA
ATAAAAATTATGTCCTACAGAGGA
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protein sequence of NO22G02000.2

>NO22G02000.2-protein ID=NO22G02000.2-protein|Name=NO22G02000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MSNHVSPQSKKEEFRQYLEKSGVIEALTKVLVGLYEEPERPSNAVDYIKK
YMGAPSNVDVEALKSVCQDLRLQVEELTRQNQELKKEVGRVGGRAGRREA
GRSGEDPDGDAPFKGKV*
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mRNA from alignment at chr22:604844..607205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G02000.2 ID=NO22G02000.2|Name=NO22G02000.2|organism=Nannochloropsis oceanica|type=mRNA|length=2362bp|location=Sequence derived from alignment at chr22:604844..607205- (Nannochloropsis oceanica)
GCCCCGTAAGAGTGCAATACCTGTGAGATTAGGAGAAAAGGTCAGCTCGT
GGATGGATTCTAGGGGTCATCCGCGTGCGGTAAGTCGCACGGGGTAGGAA
AATCGAGTCGGTGGAGATAGCTGTAAGTGGGACAAGGCCCGTGGGGTGGA
AGCCGTCGACTGGAAGCAATATTAACGTTTCAGGATAACGATGACAGCAC
AGCCGGAAGGACGAGGGCAGGAGGAGTGGGTAGGTGCCACAGGATTGTTG
AGAAGGCTGTGCGCTGTATGCATGTGCAGAGCATAGCAAATGAAAACGAA
GGGGATACGTATCGATCGATCTTCCTCGGTTCTTGTGTTTAATCCCACTG
CAAACCATGCTGCCGCGGCATTGCATCCCCCTGCACGTCCTATAGACGGA
GACGAAGGGGATCGTCGTGCGTGGCTGCGTGTATGTGTCTTGGTGTTGTA
TGCCTTGTCTTAATCACCATCTCCTTGTCGCTGAAAGACATGTCCTCCGG
CCCGTTGATGCATCTCCCGTTCCATCGTTGAGAGAAGAAAATTTCAAGAC
AAAAAGCAGCAGCATGCGTGCTCCTCCGAAATCCCAGGTACACACGCAAA
CGCGTCTCACCATACACGCTGACCACAGCCCTTGCTTACATAGGTAGGTG
GTCGCTCTTTCAATTTAATGCCTGGTCGCCTTGCTCGTCCTTTTTTACCT
AATCGCCCCCGGACTTGAGCCGCTGCTCTCTCAACATCTTACAGATAGAC
TGCGTGGCTCGTATTCCACATGCGTACATTTACCCACTCCTGCAACCCCC
CTTACACTCACCCCGACAGTGCGCTTGGTGAGACTATCCTTTCCTGCAAG
CCGCGCGCCAGAGAGGGTGAGAGAAATACCAAATAGCACGGGAGACGAAA
GAGGAGGTGAACCAGCACAAGCAACAGCAACATCAGAATTGCGGCAGGCA
CAAAGATGAGCAATCACGTTGTGAGTTTCTCGTTGATTTAATCGATCTGG
ATATGCACACATGGAGATGACTGAGTGCGCGGTTGGAAGGGCCCCTTTCA
CCAATTCCCCCTCCCTCCCTCCCTCCCTCACCCCTTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTTCCCTCCCTTCCTTCACTCCCCCTCCTATCTCT
CCGCAGTCACCCCAGTCGAAGAAGGAGGAATTTCGTCAGTACTTGGAGAA
GAGCGGCGTCATTGAGGCATTGACAAAAGGTAAGACGGTGGGGCGAGAGC
GCGGAGGAGGAAGGAAGGATAAAGAAGAAAGGGATGGTGACTGTTCAGGA
TAAGTAGTCGTTATAACGCAACCCCTCCCCTCTTGCTATCCCTTTCATCT
TCCACCTCTCGTCCTTGAGATGACACGAATCATGTCTGTGCATGTTCGTT
TGCGACCATTGCACGATTCAATTGCGATCTCACTCTTCGCAAGCCGCTAG
TGAACAAACACAATGAGTCCATAAGTCAGTCATGAGTCATTTTCCTCTCC
CTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGTCCTGGTTGGCC
TCTACGAAGAGCCCGAACGGCCTTCCAACGCCGTGGATTACATCAAGAAG
TATATGGGCGCACCTAGCAATGTGGACGTGGAGGCCCTGAAGGTAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGTGCGCATAGTAGACCT
CGGATTTTCTTGTCATTCCTGTCTAGACATTTTACACCTCTGTCACATGC
CTCTCTCACGTCTTTAATCCCTTCCTTCCCTCCCTCCGTCCCTCCGTCCC
TCCGTCCTTCCCTCCCTCCCTCCCTCTCTCCCGCCCTCCCTCCCTCTCTT
GCCCTCCAGTCGGTTTGTCAGGACCTGCGGCTGCAAGTGGAAGAGCTGAC
ACGGCAAAACCAAGAGCTCAAGAAGGAGGTAGGGAGAGTGGGAGGGAGGG
CGGGAAGGAGGGAGGCAGGAAGGTCCGGTGAGGATCCTGATGGAGACGCT
CCATTTAAAGGTAAGGTATGAAAAGTTGGAGTTAGGCAAGGAGGAAGGGA
AGGGGAAAGGGAAGGGCAACTTTGTCTTGAAGGTGTCTTTCCACTTATTT
CTTTGGTCCTGCACGTCACACTTATAGATGGCGAGCAGCACAGCCACGGG
TACCGCATTGGGGAGCGGTTGAGGAGAGAAGGATAGAGAGAAATAGAAGC
GTCATCCACCTAGAATGCTCTTCTTCTCGTTGCCTCTCTCTGTCACTCTG
TATGTACGATGTATTCTCCGCAAAAACACAATCCGGGAAGGAAGTAGAGT
AGAAAGACGAGGAAGCCGGGAATGACGACACAAAAGGAATAAAAATTATG
TCCTACAGAGGA
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Coding sequence (CDS) from alignment at chr22:604844..607205-

>NO22G02000.2 ID=NO22G02000.2|Name=NO22G02000.2|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at chr22:604844..607205- (Nannochloropsis oceanica)
ATGAGCAATCACGTTTCACCCCAGTCGAAGAAGGAGGAATTTCGTCAGTA
CTTGGAGAAGAGCGGCGTCATTGAGGCATTGACAAAAGTCCTGGTTGGCC
TCTACGAAGAGCCCGAACGGCCTTCCAACGCCGTGGATTACATCAAGAAG
TATATGGGCGCACCTAGCAATGTGGACGTGGAGGCCCTGAAGTCGGTTTG
TCAGGACCTGCGGCTGCAAGTGGAAGAGCTGACACGGCAAAACCAAGAGC
TCAAGAAGGAGGTAGGGAGAGTGGGAGGGAGGGCGGGAAGGAGGGAGGCA
GGAAGGTCCGGTGAGGATCCTGATGGAGACGCTCCATTTAAAGGTAAGGT
ATGA
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Synonyms
Publications