NO22G01970, NO22G01970 (gene) Nannochloropsis oceanica

Overview
NameNO22G01970
Unique NameNO22G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2169
Alignment locationchr22:587248..589416 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:587248..589416 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012479SAP30BP
Homology
The following BLAST results are available for this feature:
BLAST of NO22G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01970.1NO22G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01970.1NO22G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01970 ID=NO22G01970|Name=NO22G01970|organism=Nannochloropsis oceanica|type=gene|length=2169bp
ATGAACAGCTTGGGCCTGGTCGCAGGCTACGACACCGAGGAAGACGAGGA
GGACGACTCACGTCCGCAGCAGCAGCAGCAGCAGCAGCAGACAGTGAAGA
AAGAGGAGGAGAAGGAAGGGACGGAGCAGCATGCCGgtatgtaaattgga
gctcccctttcctccctcccttcctccctgtctccctccctctctctctt
cccctcttcctgctctcttacgcacgccctgcattccttatgaaaaacaa
caacaacaaaacctgacatcagcacacacacgcgttaggtactcaatccc
tctctccctccctccctccctctctacttccctcgctccctgtcagGTAA
TGTCAACGGCGGCCTACTTGGCTACAGATACCGCGCCGACTCCCACGCCG
AAGACGAGGGCGACACAGGAGCAGCAGCAGCAGCAGCAGCACCGGGACTA
GGCGCTCTCCAGGGTCCCTCCTGGCCGCCATCCCCTGCCTCCCACCACCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCTCCTCCTCCACCT
CCCACTCTGGCTCCCGCTCCTTCCCGTCTTCCCCCTTTGTAGGGGAAGAG
AGCAGCCACCAGGGAGGGAGGGAGGGAGGGCTGGCGTGGCAGTCCCCCCT
TATTCCTCCAGGAGGAGGAGGGGGAGGAGAGACGTACTCCGTACCCGTTT
CCCCTTTCACTCGCGAGACAGCCGAGCTCACTCTCGATGACGAGGAGGAG
GGAGGGAGGAAGGGAGAGGAGGAGGTGACGTATTTTGATTTGTTGCCGCC
GGAGGTGGAGGGGGAGGAGTGTGATCCGGTGGTACAGCAACGAGTGGTTG
ATTACATGGGTCAGTGGACAGCAGCCGCTCCGGACGAGGAGGAGAAAGGG
GAGGAGGAGGGGGTGGGGAGAGGGAGGGGGAGGAAGAGGAGGAGGAATGG
GGGAGTGGGGGGCTTCACGGCGAATTTAAAAGAGAAGAAGGATTTCGGGA
ATCCGGAGTTGTTGCAACGGgtagggagggagggagggagggaggtaggg
aggtagggaggtaggtaggtaggtaggtaggtagggagggttgtatttgt
agcagcggggacggtggaggcactgaccgtccttccctccccctcctccc
accccccccctccttactagATCATCGAGGTGTTTGGGATCGACGAGTGG
GCTTCCAATTACCCTCCTCATCTCTTCTCGCCCCATGCCTACGAAGAGGG
GGATTACATGGAGAGGATACGAAGCACCCAGCGACAGCTGGAAATAAGCA
TGCTACAGgtacatcctccctccctccctcccctcctctctccctccctc
cttcacgcctacggagaggaggactcgatggagaaaatccgatcgttccg
cccgcccacccgccctccttccctccctccctccctccctccctccctcc
cttctttcattttgttgttcactcacccttctccgcttcctgtccctctt
tcctattccctcgtctagCAACAAGCTGCTGTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTTACCGCCTCCAGCACGGACACCACCCGTC
CTCCCCTTCCTCCTCCTCCTTTCTCCTCCTCCTCCTCCACTTCCTCCTCC
TCCTTGCACCAACAGCACGTATCTCTGCGAGCGCGGGAAGGGAGGGAGGG
ACCGCCCGCGGTCGCGCGTGTCGTCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAAGGGAGGAGGAGGCATACCTACACCTCCTCTGTCTTGGCCCCTC
CCAGGCCCTCCCTCCCTTCCGCCCTCCTCCTCTTCCTCCTCCACGGCCTC
GGTGGCCGTGCGAGCCGCACTGGCACTCACGCAAAAAGTCCAACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGCTTGCTTTCGGGGCC
AGGAAGGGAGGGAGGGAGGGGGGGAAGGTACTGCCGCAGCTGCAGGAGCA
GCAGCAGACACAGCAGCAGCAGCAGCAGTTCCAAGAGGCCAAAAAACAGG
CAGAGCAAGTGGCTTCACGACTGGCACGGATGGGAGGGAGGGAGGGAGGG
GTAGGGGGGAAGCCACCGTCGCCTGGCGTGGATGAGCGGGGAAAGAAGCG
GAGTCGATTCACCGACTAG
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protein sequence of NO22G01970.1

>NO22G01970.1-protein ID=NO22G01970.1-protein|Name=NO22G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MNSLGLVAGYDTEEDEEDDSRPQQQQQQQQTVKKEEEKEGTEQHAGNVNG
GLLGYRYRADSHAEDEGDTGAAAAAAAPGLGALQGPSWPPSPASHHQQQQ
QQQQQQQQPSSSTSHSGSRSFPSSPFVGEESSHQGGREGGLAWQSPLIPP
GGGGGGETYSVPVSPFTRETAELTLDDEEEGGRKGEEEVTYFDLLPPEVE
GEECDPVVQQRVVDYMGQWTAAAPDEEEKGEEEGVGRGRGRKRRRNGGVG
GFTANLKEKKDFGNPELLQRIIEVFGIDEWASNYPPHLFSPHAYEEGDYM
ERIRSTQRQLEISMLQQQAAVLPPSLPPSLPPSLTASSTDTTRPPLPPPP
FSSSSSTSSSSLHQQHVSLRAREGREGPPAVARVVSSSSSSSSSSKGGGG
IPTPPLSWPLPGPPSLPPSSSSSSTASVAVRAALALTQKVQQQQQQQQQQ
QQQQALAFGARKGGREGGKVLPQLQEQQQTQQQQQQFQEAKKQAEQVASR
LARMGGREGGVGGKPPSPGVDERGKKRSRFTD*
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Synonyms
Publications