NO22G01930, NO22G01930 (gene) Nannochloropsis oceanica

Overview
NameNO22G01930
Unique NameNO22G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1771
Alignment locationchr22:576845..578615 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA-binding SAP
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:576845..578615 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
Homology
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BLAST of NO22G01930 vs. NCBI_GenBank
Match: EWM20399.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 142.1 bits (357), Expect = 2.300e-30
Identity = 92/122 (75.41%), Postives = 106/122 (86.89%), Query Frame = 0 
Query:    1 MDVDTEELRLVYEAFSVRELNDELSSRGLRADGTALEKRDLIDQLLRADQRLPPLTGTXXXXXXXXXXXXXXXXXXXXXXXXMVADFCSLTGAPAETAIHMLDAMGGDLERAVSFYLDSGGV 123
            MDVDTEELR +Y+A SVREL +EL+SRGL+ +GTALEKRDLIDQLLRAD  LPPL  +    XXXXXXXXXXXXXXXXXXXX +ADFCSLTGA  E A+H+L+AMGGDLE+AVS+YLDSGG+
Sbjct:    1 MDVDTEELRQIYDALSVRELKEELTSRGLQTEGTALEKRDLIDQLLRADNHLPPLPSSSTTSXXXXXXXXXXXXXXXXXXXXXIADFCSLTGAGPEAAVHILEAMGGDLEQAVSYYLDSGGI 122
The following BLAST results are available for this feature:
BLAST of NO22G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20399.12.300e-3075.41DNA-binding SAP [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01930.1NO22G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01930.1NO22G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01930 ID=NO22G01930|Name=NO22G01930|organism=Nannochloropsis oceanica|type=gene|length=1771bp
GCCTTGTTGCCTGATTTCCTTATCTTTTTTTAAGTGGTGTACATTCATCG
AGTAAATACCTACCTGTGGAGAACATTTTTCAATCGAGGGCGAAATGGCA
CAACAGGCTTAAACCGTCTGAAGAGACTCTCCAAGCCACTTCAGGGCTTA
CCAGTACGCTGTTTCACGTATATTTCGATTACTTGCGAGTCTTTTTGTCT
GACTGCCTCATCAGGACACCATACTAATTGCGCCCAGGACTTGAATTTAA
ATGCTTGCTGGTGAGCGAGGCAGTCGAAGGTACATTCAATGCTCGTGTTT
TTTCCTGTCCGCCTTATCACTTTCACCCCGCTGTTCCAAAAACTTTTCTC
AGCCAAACACATACAAGCTCCTACAAGCTTACACACACACATGCGGTAGA
ACGACTCTCTCCACCATACTGTACACCAGCGGGGGCATCCATTCGCGCCA
TGCCCTCTCTCTCTCTCGCTTCAAGTGACTTCTCCAAAACCCGTCCCCTC
CTCCTCGCCTTAGCGTGACTCGCTGCTTCTTTTCTCGTCCCCGCGTCACG
CCCCGCTGGTGCCGCAACTCCACGCGGCCGCGGTACTCTCCCCTTGTGGT
CGCCACATTCCCAAGCACACACACAGCCAAAGTCCATGCGAGGGCAAGGG
TTGAGTGGCGGGCACGGAACCTTGATAGGGGCAACGACGCATCTATTCTG
ATAACGGTGGCAGGAACGCACGGCAGGAACTGATTCCCTTTTTTCACCCC
TCACTCACCACGGCCACCAACACAGACGGAGACCAGAAAAAGGCAGCCAC
AGAGCCATGGACGTGGATACGGAAGAGCTTCGACTTGTCTACGAGGCCTT
CAGCGTGCGGGAGCTCAACGACGAACTCTCCTCCCGGGGCCTCCGTGCCG
ATGGAgtaagtctacagatggaactaaccctctcctactatccatccttc
cttccttccttgactgtgtctcttctcctttgcgactgcctgaagctcgt
cgtttttgaatttgtctgtctgactgctgctacagtcacagaactctctt
cctttctccttccccctccctcctaacctcttgctcacaactccctcccc
gccccccccctctctctttctcgtttattcagACGGCGCTTGAAAAGCGC
GACCTCATTGACCAGCTCCTTCGGGCCGATCAGCGTCTCCCACCTCTCAC
TGGTACCTCTGCTTCTGCCTCGTCCTCCTCTGCTGCCGCCACGACCGCTG
CCGCTGCTCCTGCCCCTCCCTCCAGTGCGATGGTGGCCGATTTTTGTTCC
TTAACAGGGGCACCAGCTGAAACGGCCATTCATATGCTTGATGCCATGGG
AGGGGACTTAGAGCGGGCCGTGTCATTTTATTTGGATTCGGGAGGAGTAG
GATTTGGGACAGGAGGGGGAGGAGGAGGAGGAGAAGGAGGAGAAGGGAGA
GGTGCTGGGGCTGGTGGAAATGTTGATGGAGGAGGAGGAGGGGAGGACAT
GGGAGAAGGGGAGGAGGTTCGCGCGCCGTTACCAACGATGAGGGATACAT
TAATGGGAGGGCCTCCCATGATGGGTTCGGGAATAGGGCCGCGGCGGGCG
GCGAGCTTGAGAGGGCTAGGGGGAGGAGATGGGGGAGGAGGAGGAGGAGG
AGGAGGAGGGGTAGGAGTGGGGCTCATCCAGGCGGCGGCTGCTTTGTTGG
GAGGAGGGAGGGGGGAGGAGGAGGAAGGGGAGGGGGAGGAGGGATGGGGA
TGGTGCATGCCGGGGCGATGA
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protein sequence of NO22G01930.1

>NO22G01930.1-protein ID=NO22G01930.1-protein|Name=NO22G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MDVDTEELRLVYEAFSVRELNDELSSRGLRADGTALEKRDLIDQLLRADQ
RLPPLTGTSASASSSSAAATTAAAAPAPPSSAMVADFCSLTGAPAETAIH
MLDAMGGDLERAVSFYLDSGGVGFGTGGGGGGGEGGEGRGAGAGGNVDGG
GGGEDMGEGEEVRAPLPTMRDTLMGGPPMMGSGIGPRRAASLRGLGGGDG
GGGGGGGGGVGVGLIQAAAALLGGGRGEEEEGEGEEGWGWCMPGR*
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Synonyms
Publications