NO22G01930.1, NO22G01930.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G01930.1
Unique Name	NO22G01930.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1544
Alignment location	chr22:576845..578615 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:576845..578615 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO22G01930.1 vs.
Match: EWM20399.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 149.4 bits (376), Expect = 1.400e-32
Identity = 96/155 (61.94%), Postives = 118/155 (76.13%), Query Frame = 0

Query:    1 MDVDTEELRLVYEAFSVRELNDELSSRGLRADGTALEKRDLIDQLLRADQRLPPLTGTSASASSSSAAATTAAAAPAPPSSAMVADFCSLTGAPAETAIHMLDAMGGDLERAVSFYLDSGGVGFGTGGGGGGGE--GGEGRGAGAGGNVDGGGGG 154
            MDVDTEELR +Y+A SVREL +EL+SRGL+ +GTALEKRDLIDQLLRAD  LPPL  +S ++SS +  ++   A+   PSSA +ADFCSLTGA  E A+H+L+AMGGDLE+AVS+YLDSGG+GFGT GG  GGE  GGE +    G   +G G G
Sbjct:    1 MDVDTEELRQIYDALSVRELKEELTSRGLQTEGTALEKRDLIDQLLRADNHLPPLPSSSTTSSSLTPGSSAPTASATAPSSATIADFCSLTGAGPEAAVHILEAMGGDLEQAVSYYLDSGGIGFGTSGGKDGGEEGGGERKREEEGEEGEGWGPG 155

The following BLAST results are available for this feature:

BLAST of NO22G01930.1 vs.

BLAST of NO22G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20399.1	1.400e-32	61.94	DNA-binding SAP [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G01930	NO22G01930	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01930.1	NO22G01930.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01930.1.cds1	NO22G01930.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01930.1.cds2	NO22G01930.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:576845..578615-
coding sequence from alignment at chr22:576845..578615-

mRNA sequence

>NO22G01930.1 ID=NO22G01930.1|Name=NO22G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
GCCTTGTTGCCTGATTTCCTTATCTTTTTTTAAGTGGTGTACATTCATCG
AGTAAATACCTACCTGTGGAGAACATTTTTCAATCGAGGGCGAAATGGCA
CAACAGGCTTAAACCGTCTGAAGAGACTCTCCAAGCCACTTCAGGGCTTA
CCAGTACGCTGTTTCACGTATATTTCGATTACTTGCGAGTCTTTTTGTCT
GACTGCCTCATCAGGACACCATACTAATTGCGCCCAGGACTTGAATTTAA
ATGCTTGCTGGTGAGCGAGGCAGTCGAAGGTACATTCAATGCTCGTGTTT
TTTCCTGTCCGCCTTATCACTTTCACCCCGCTGTTCCAAAAACTTTTCTC
AGCCAAACACATACAAGCTCCTACAAGCTTACACACACACATGCGGTAGA
ACGACTCTCTCCACCATACTGTACACCAGCGGGGGCATCCATTCGCGCCA
TGCCCTCTCTCTCTCTCGCTTCAAGTGACTTCTCCAAAACCCGTCCCCTC
CTCCTCGCCTTAGCGTGACTCGCTGCTTCTTTTCTCGTCCCCGCGTCACG
CCCCGCTGGTGCCGCAACTCCACGCGGCCGCGGTACTCTCCCCTTGTGGT
CGCCACATTCCCAAGCACACACACAGCCAAAGTCCATGCGAGGGCAAGGG
TTGAGTGGCGGGCACGGAACCTTGATAGGGGCAACGACGCATCTATTCTG
ATAACGGTGGCAGGAACGCACGGCAGGAACTGATTCCCTTTTTTCACCCC
TCACTCACCACGGCCACCAACACAGACGGAGACCAGAAAAAGGCAGCCAC
AGAGCCATGGACGTGGATACGGAAGAGCTTCGACTTGTCTACGAGGCCTT
CAGCGTGCGGGAGCTCAACGACGAACTCTCCTCCCGGGGCCTCCGTGCCG
ATGGAACGGCGCTTGAAAAGCGCGACCTCATTGACCAGCTCCTTCGGGCC
GATCAGCGTCTCCCACCTCTCACTGGTACCTCTGCTTCTGCCTCGTCCTC
CTCTGCTGCCGCCACGACCGCTGCCGCTGCTCCTGCCCCTCCCTCCAGTG
CGATGGTGGCCGATTTTTGTTCCTTAACAGGGGCACCAGCTGAAACGGCC
ATTCATATGCTTGATGCCATGGGAGGGGACTTAGAGCGGGCCGTGTCATT
TTATTTGGATTCGGGAGGAGTAGGATTTGGGACAGGAGGGGGAGGAGGAG
GAGGAGAAGGAGGAGAAGGGAGAGGTGCTGGGGCTGGTGGAAATGTTGAT
GGAGGAGGAGGAGGGGAGGACATGGGAGAAGGGGAGGAGGTTCGCGCGCC
GTTACCAACGATGAGGGATACATTAATGGGAGGGCCTCCCATGATGGGTT
CGGGAATAGGGCCGCGGCGGGCGGCGAGCTTGAGAGGGCTAGGGGGAGGA
GATGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGGTAGGAGTGGGGCTCAT
CCAGGCGGCGGCTGCTTTGTTGGGAGGAGGGAGGGGGGAGGAGGAGGAAG
GGGAGGGGGAGGAGGGATGGGGATGGTGCATGCCGGGGCGATGA

protein sequence of NO22G01930.1

>NO22G01930.1-protein ID=NO22G01930.1-protein|Name=NO22G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MDVDTEELRLVYEAFSVRELNDELSSRGLRADGTALEKRDLIDQLLRADQ
RLPPLTGTSASASSSSAAATTAAAAPAPPSSAMVADFCSLTGAPAETAIH
MLDAMGGDLERAVSFYLDSGGVGFGTGGGGGGGEGGEGRGAGAGGNVDGG
GGGEDMGEGEEVRAPLPTMRDTLMGGPPMMGSGIGPRRAASLRGLGGGDG
GGGGGGGGGVGVGLIQAAAALLGGGRGEEEEGEGEEGWGWCMPGR*

mRNA from alignment at chr22:576845..578615-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G01930.1 ID=NO22G01930.1|Name=NO22G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp|location=Sequence derived from alignment at chr22:576845..578615- (Nannochloropsis oceanica)
GCCTTGTTGCCTGATTTCCTTATCTTTTTTTAAGTGGTGTACATTCATCG
AGTAAATACCTACCTGTGGAGAACATTTTTCAATCGAGGGCGAAATGGCA
CAACAGGCTTAAACCGTCTGAAGAGACTCTCCAAGCCACTTCAGGGCTTA
CCAGTACGCTGTTTCACGTATATTTCGATTACTTGCGAGTCTTTTTGTCT
GACTGCCTCATCAGGACACCATACTAATTGCGCCCAGGACTTGAATTTAA
ATGCTTGCTGGTGAGCGAGGCAGTCGAAGGTACATTCAATGCTCGTGTTT
TTTCCTGTCCGCCTTATCACTTTCACCCCGCTGTTCCAAAAACTTTTCTC
AGCCAAACACATACAAGCTCCTACAAGCTTACACACACACATGCGGTAGA
ACGACTCTCTCCACCATACTGTACACCAGCGGGGGCATCCATTCGCGCCA
TGCCCTCTCTCTCTCTCGCTTCAAGTGACTTCTCCAAAACCCGTCCCCTC
CTCCTCGCCTTAGCGTGACTCGCTGCTTCTTTTCTCGTCCCCGCGTCACG
CCCCGCTGGTGCCGCAACTCCACGCGGCCGCGGTACTCTCCCCTTGTGGT
CGCCACATTCCCAAGCACACACACAGCCAAAGTCCATGCGAGGGCAAGGG
TTGAGTGGCGGGCACGGAACCTTGATAGGGGCAACGACGCATCTATTCTG
ATAACGGTGGCAGGAACGCACGGCAGGAACTGATTCCCTTTTTTCACCCC
TCACTCACCACGGCCACCAACACAGACGGAGACCAGAAAAAGGCAGCCAC
AGAGCCATGGACGTGGATACGGAAGAGCTTCGACTTGTCTACGAGGCCTT
CAGCGTGCGGGAGCTCAACGACGAACTCTCCTCCCGGGGCCTCCGTGCCG
ATGGAGTAAGTCTACAGATGGAACTAACCCTCTCCTACTATCCATCCTTC
CTTCCTTCCTTGACTGTGTCTCTTCTCCTTTGCGACTGCCTGAAGCTCGT
CGTTTTTGAATTTGTCTGTCTGACTGCTGCTACAGTCACAGAACTCTCTT
CCTTTCTCCTTCCCCCTCCCTCCTAACCTCTTGCTCACAACTCCCTCCCC
GCCCCCCCCCTCTCTCTTTCTCGTTTATTCAGACGGCGCTTGAAAAGCGC
GACCTCATTGACCAGCTCCTTCGGGCCGATCAGCGTCTCCCACCTCTCAC
TGGTACCTCTGCTTCTGCCTCGTCCTCCTCTGCTGCCGCCACGACCGCTG
CCGCTGCTCCTGCCCCTCCCTCCAGTGCGATGGTGGCCGATTTTTGTTCC
TTAACAGGGGCACCAGCTGAAACGGCCATTCATATGCTTGATGCCATGGG
AGGGGACTTAGAGCGGGCCGTGTCATTTTATTTGGATTCGGGAGGAGTAG
GATTTGGGACAGGAGGGGGAGGAGGAGGAGGAGAAGGAGGAGAAGGGAGA
GGTGCTGGGGCTGGTGGAAATGTTGATGGAGGAGGAGGAGGGGAGGACAT
GGGAGAAGGGGAGGAGGTTCGCGCGCCGTTACCAACGATGAGGGATACAT
TAATGGGAGGGCCTCCCATGATGGGTTCGGGAATAGGGCCGCGGCGGGCG
GCGAGCTTGAGAGGGCTAGGGGGAGGAGATGGGGGAGGAGGAGGAGGAGG
AGGAGGAGGGGTAGGAGTGGGGCTCATCCAGGCGGCGGCTGCTTTGTTGG
GAGGAGGGAGGGGGGAGGAGGAGGAAGGGGAGGGGGAGGAGGGATGGGGA
TGGTGCATGCCGGGGCGATGA

Coding sequence (CDS) from alignment at chr22:576845..578615-

>NO22G01930.1 ID=NO22G01930.1|Name=NO22G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr22:576845..578615- (Nannochloropsis oceanica)
ATGGACGTGGATACGGAAGAGCTTCGACTTGTCTACGAGGCCTTCAGCGT
GCGGGAGCTCAACGACGAACTCTCCTCCCGGGGCCTCCGTGCCGATGGAA
CGGCGCTTGAAAAGCGCGACCTCATTGACCAGCTCCTTCGGGCCGATCAG
CGTCTCCCACCTCTCACTGGTACCTCTGCTTCTGCCTCGTCCTCCTCTGC
TGCCGCCACGACCGCTGCCGCTGCTCCTGCCCCTCCCTCCAGTGCGATGG
TGGCCGATTTTTGTTCCTTAACAGGGGCACCAGCTGAAACGGCCATTCAT
ATGCTTGATGCCATGGGAGGGGACTTAGAGCGGGCCGTGTCATTTTATTT
GGATTCGGGAGGAGTAGGATTTGGGACAGGAGGGGGAGGAGGAGGAGGAG
AAGGAGGAGAAGGGAGAGGTGCTGGGGCTGGTGGAAATGTTGATGGAGGA
GGAGGAGGGGAGGACATGGGAGAAGGGGAGGAGGTTCGCGCGCCGTTACC
AACGATGAGGGATACATTAATGGGAGGGCCTCCCATGATGGGTTCGGGAA
TAGGGCCGCGGCGGGCGGCGAGCTTGAGAGGGCTAGGGGGAGGAGATGGG
GGAGGAGGAGGAGGAGGAGGAGGAGGGGTAGGAGTGGGGCTCATCCAGGC
GGCGGCTGCTTTGTTGGGAGGAGGGAGGGGGGAGGAGGAGGAAGGGGAGG
GGGAGGAGGGATGGGGATGGTGCATGCCGGGGCGATGA

Synonyms

Publications