NO22G01600, NO22G01600 (gene) Nannochloropsis oceanica

Overview
NameNO22G01600
Unique NameNO22G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1553
Alignment locationchr22:469717..471269 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna pseudouridine synthase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:469717..471269 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
Homology
BLAST of NO22G01600 vs. NCBI_GenBank
Match: EWM21514.1 (trna pseudouridine synthase family protein [Nannochloropsis gaditana])

HSP 1 Score: 170.2 bits (430), Expect = 1.500e-38
Identity = 111/288 (38.54%), Postives = 150/288 (52.08%), Query Frame = 0
Query:   83 LHIAYDGSQYKVWKDKVIHDSTLPLSSDGKNGAKSNNNSNRNIKSVRRKKGFFANHPP----SLHHRLGTALSIIHSHAPLASLLLTPAIITSGGVHARAQLLSYQPXXXXXXXXXXXXXXXXXXXISANDPFNGDLTKAAHALNRLLPDDLRIFSICPLPWVGFDLKKDLVCMRFSYTVMIGPVGDPSLRHRAWLFTPSSIREEVRNEEGLRKVQHAVAAAAAAPAMET----------GSLELNKVEVEGKWGPGVHEARARLVEFNFHVGRGVGRGGDEGERGRT 357
            LH+AYDGSQYKVW D    D                   N+++K  R KK    + PP    SLHHRLGT LSIIHSH P  SL LTPA++ +GG HA +QL+SY+P                        PFNGDL + AHALNRLLP D+R+  +   PW  F +++DLV + +SYT+++G + DP+LRH A ++     +E V  EEG++K+Q A+   +   A E               L    +E  WGPG+ + RARL  F   V  G     D+ E+ +T
Sbjct:   69 LHVAYDGSQYKVWTDLDTPD-------------------NQHLKGQRLKK---RSRPPRRTLSLHHRLGTTLSIIHSHVPPHSLQLTPALLVTGGAHAESQLISYRPPAL---------------------PFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYARVYHHQR-KEWV--EEGIKKLQ-AIFGRSNMTAEELLGKGGERDAGAGQRLLSATMEAGWGPGIGKGRARLARFELEVEGGRSENLDDDEKRQT 309          
The following BLAST results are available for this feature:
BLAST of NO22G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21514.11.500e-3838.54trna pseudouridine synthase family protein [Nannoc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004101NSK004101Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01600.1NO22G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100317g2gene8914Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01600.1NO22G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01600 ID=NO22G01600|Name=NO22G01600|organism=Nannochloropsis oceanica|type=gene|length=1553bp
ATGATGCTTCTGCACCACCACCACCGCCACTACGCCACTCCTAGCCTTAA
GCTGCTAGCAATAGTTATCCTTTCCTTACTTTTTGTGCCCACGAAAGCCT
TCTGGCCACCACCTTCCTCCCCTTCTCCTTGCATTCTCCGGCAGCAGTCT
CGGTACCACCATCCGCCACGCATTCTCTCTGCCATAACCCACAACACCGA
CGACCTCCAGCAACCCCTCCCGCCCTCCCTCCCTCCCCCTCTTCTCCTTC
ACATCGCCTACGACGGTAGTCAATACAAAGTCTGGAAGGACAAAGTGATA
CACGACTCAACCCTACCCCTATCTAGCGATGGCAAGAACGGCGCCAAAAG
CAACAACAACAGTAATAGGAATATAAAGAGTGTCCGAAGAAAAAAAGGGT
TCTTCGCCAACCACCCTCCTTCCCTCCACCATCGTCTTGGCACCGCCCTT
TCCATCATTCACTCTCACGCCCCCCTTGCCTCCCTCCTCCTCACTCCCGC
AATCATCACCTCTGGGGGGGTCCACGCCCGGGCGCAACTGCTTTCCTATC
AACCACCTTGCAGCAGCAGCAGCAGCAGCAGCGGTAGCGGCATTAGTAGC
GGCGGTGGCAGCATCAGCGCCAATGATCCGTTTAACGGTGACTTGACCAA
GGCAGCCCATGCACTCAATCGGCTCTTACCCGATGACTTGAGAATATTTT
CCATTTGCCCGTTGCCTTGGGTGGGATTCGACTTAAAGAAGGACTTAGTA
TGCATGCGGTTCTCATATACAGTGATGATAGGCCCTGTCGGCGACCCCAG
TCTGCGACATCGTGCGTGGTTGTTCACTCCATCGTCGATAAGAGAGGAGG
TAAGGAACGAGGAGGGGTTGAGGAAGGTCCAACATGCAGTAGCAGCAGCA
GCAGCGGCGCCAGCAATGGAGACGGGGAGCTTGGAACTAAACAAAGTTGA
AGTAGAGGGGAAGTGGGGCCCGGGTGTACATGAGGCAAGAGCAAGACTGG
TCGAGTTTAATTTTCATGTGGGACGAGGAGTAGGAAGGGGAGGAGACGAA
GGAGAAAGAGGAAGAACAAGAGGAGGAAAGCAGAGGCATCAGCCGCAGAC
TAGTGGTAGAAGTAATGACGAGGTGGTGGTGAAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGAGAGGCAATACAGAGTGCCCTGGTGGCATGGATA
GGCAAAGTCATGCACAGTGCTTTCTCGATGAAAGAGGAGGAGGAAGGGGG
GAAGCAAGTGCCAACATTGAATGGGTTGgtgcttgagtcgttgacatttc
agcagcggcaacaacaggggtggggaagagaagggcaactatgggtggtt
gaagatccttattcaaaaagcagGAAGGGACTTTAGACTGTGGTGTAGCG
GAGGAGAATGACGAGGAGGAGGGCGAGGAGGATGAGGATGAGGATGAGGA
TGATGTGGACGAGGAAGAGGACGAGGAGGACGAGGAGGACGAGGGAAAAG
CGAACAAGGGTGATGCTGTCGTGGAATTGATGCATCTCGTGTACATAGCA
TAA
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protein sequence of NO22G01600.1

>NO22G01600.1-protein ID=NO22G01600.1-protein|Name=NO22G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MMLLHHHHRHYATPSLKLLAIVILSLLFVPTKAFWPPPSSPSPCILRQQS
RYHHPPRILSAITHNTDDLQQPLPPSLPPPLLLHIAYDGSQYKVWKDKVI
HDSTLPLSSDGKNGAKSNNNSNRNIKSVRRKKGFFANHPPSLHHRLGTAL
SIIHSHAPLASLLLTPAIITSGGVHARAQLLSYQPPCSSSSSSSGSGISS
GGGSISANDPFNGDLTKAAHALNRLLPDDLRIFSICPLPWVGFDLKKDLV
CMRFSYTVMIGPVGDPSLRHRAWLFTPSSIREEVRNEEGLRKVQHAVAAA
AAAPAMETGSLELNKVEVEGKWGPGVHEARARLVEFNFHVGRGVGRGGDE
GERGRTRGGKQRHQPQTSGRSNDEVVVKEEEEEEEEEEGEAIQSALVAWI
GKVMHSAFSMKEEEEGGKQVPTLNGLEGTLDCGVAEENDEEEGEEDEDED
EDDVDEEEDEEDEEDEGKANKGDAVVELMHLVYIA*
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Synonyms
Publications