NO22G01600.1, NO22G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01600.1
Unique NameNO22G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr22:469717..471269 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:469717..471269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01600.1 vs.
Match: EWM21514.1 (trna pseudouridine synthase family protein [Nannochloropsis gaditana])

HSP 1 Score: 177.2 bits (448), Expect = 1.300e-40
Identity = 124/324 (38.27%), Postives = 164/324 (50.62%), Query Frame = 0 
Query:   47 RQQSRYHHPPRILSAITHNTDDLQQPLPPSLPPPLLLHIAYDGSQYKVWKDKVIHDSTLPLSSDGKNGAKSNNNSNRNIKSVRRKKGFFANHPP----SLHHRLGTALSIIHSHAPLASLLLTPAIITSGGVHARAQLLSYQPPCSSSSSSSGSGISSGGGSISANDPFNGDLTKAAHALNRLLPDDLRIFSICPLPWVGFDLKKDLVCMRFSYTVMIGPVGDPSLRHRAWLFTPSSIREEVRNEEGLRKVQHAVAAAAAAPAMET----------GSLELNKVEVEGKWGPGVHEARARLVEFNFHVGRGVGRGGDEGERGRT 357
            R    YH  P  L    H+  D    LP  L   LLLH+AYDGSQYKVW D    D                   N+++K  R KK    + PP    SLHHRLGT LSIIHSH P  SL LTPA++ +GG HA +QL+SY+PP                       PFNGDL + AHALNRLLP D+R+  +   PW  F +++DLV + +SYT+++G + DP+LRH A ++     +E V  EEG++K+Q A+   +   A E               L    +E  WGPG+ + RARL  F   V  G     D+ E+ +T
Sbjct:   41 RDAPPYHRRPTSLRE--HSQSDT---LPSKL---LLLHVAYDGSQYKVWTDLDTPD-------------------NQHLKGQRLKK---RSRPPRRTLSLHHRLGTTLSIIHSHVPPHSLQLTPALLVTGGAHAESQLISYRPPAL---------------------PFNGDLNQTAHALNRLLPADVRVLEVLFPPWDNFCMRRDLVSVTYSYTIILGGLEDPTLRHYARVYHHQR-KEWV--EEGIKKLQ-AIFGRSNMTAEELLGKGGERDAGAGQRLLSATMEAGWGPGIGKGRARLARFELEVEGGRSENLDDDEKRQT 309
The following BLAST results are available for this feature:
BLAST of NO22G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21514.11.300e-4038.27trna pseudouridine synthase family protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01600NO22G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01600.1NO22G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01600.1.cds1NO22G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01600.1.cds2NO22G01600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01600.1 ID=NO22G01600.1|Name=NO22G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGATGCTTCTGCACCACCACCACCGCCACTACGCCACTCCTAGCCTTAA
GCTGCTAGCAATAGTTATCCTTTCCTTACTTTTTGTGCCCACGAAAGCCT
TCTGGCCACCACCTTCCTCCCCTTCTCCTTGCATTCTCCGGCAGCAGTCT
CGGTACCACCATCCGCCACGCATTCTCTCTGCCATAACCCACAACACCGA
CGACCTCCAGCAACCCCTCCCGCCCTCCCTCCCTCCCCCTCTTCTCCTTC
ACATCGCCTACGACGGTAGTCAATACAAAGTCTGGAAGGACAAAGTGATA
CACGACTCAACCCTACCCCTATCTAGCGATGGCAAGAACGGCGCCAAAAG
CAACAACAACAGTAATAGGAATATAAAGAGTGTCCGAAGAAAAAAAGGGT
TCTTCGCCAACCACCCTCCTTCCCTCCACCATCGTCTTGGCACCGCCCTT
TCCATCATTCACTCTCACGCCCCCCTTGCCTCCCTCCTCCTCACTCCCGC
AATCATCACCTCTGGGGGGGTCCACGCCCGGGCGCAACTGCTTTCCTATC
AACCACCTTGCAGCAGCAGCAGCAGCAGCAGCGGTAGCGGCATTAGTAGC
GGCGGTGGCAGCATCAGCGCCAATGATCCGTTTAACGGTGACTTGACCAA
GGCAGCCCATGCACTCAATCGGCTCTTACCCGATGACTTGAGAATATTTT
CCATTTGCCCGTTGCCTTGGGTGGGATTCGACTTAAAGAAGGACTTAGTA
TGCATGCGGTTCTCATATACAGTGATGATAGGCCCTGTCGGCGACCCCAG
TCTGCGACATCGTGCGTGGTTGTTCACTCCATCGTCGATAAGAGAGGAGG
TAAGGAACGAGGAGGGGTTGAGGAAGGTCCAACATGCAGTAGCAGCAGCA
GCAGCGGCGCCAGCAATGGAGACGGGGAGCTTGGAACTAAACAAAGTTGA
AGTAGAGGGGAAGTGGGGCCCGGGTGTACATGAGGCAAGAGCAAGACTGG
TCGAGTTTAATTTTCATGTGGGACGAGGAGTAGGAAGGGGAGGAGACGAA
GGAGAAAGAGGAAGAACAAGAGGAGGAAAGCAGAGGCATCAGCCGCAGAC
TAGTGGTAGAAGTAATGACGAGGTGGTGGTGAAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGAGAGGCAATACAGAGTGCCCTGGTGGCATGGATA
GGCAAAGTCATGCACAGTGCTTTCTCGATGAAAGAGGAGGAGGAAGGGGG
GAAGCAAGTGCCAACATTGAATGGGTTGGAAGGGACTTTAGACTGTGGTG
TAGCGGAGGAGAATGACGAGGAGGAGGGCGAGGAGGATGAGGATGAGGAT
GAGGATGATGTGGACGAGGAAGAGGACGAGGAGGACGAGGAGGACGAGGG
AAAAGCGAACAAGGGTGATGCTGTCGTGGAATTGATGCATCTCGTGTACA
TAGCATAA
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protein sequence of NO22G01600.1

>NO22G01600.1-protein ID=NO22G01600.1-protein|Name=NO22G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MMLLHHHHRHYATPSLKLLAIVILSLLFVPTKAFWPPPSSPSPCILRQQS
RYHHPPRILSAITHNTDDLQQPLPPSLPPPLLLHIAYDGSQYKVWKDKVI
HDSTLPLSSDGKNGAKSNNNSNRNIKSVRRKKGFFANHPPSLHHRLGTAL
SIIHSHAPLASLLLTPAIITSGGVHARAQLLSYQPPCSSSSSSSGSGISS
GGGSISANDPFNGDLTKAAHALNRLLPDDLRIFSICPLPWVGFDLKKDLV
CMRFSYTVMIGPVGDPSLRHRAWLFTPSSIREEVRNEEGLRKVQHAVAAA
AAAPAMETGSLELNKVEVEGKWGPGVHEARARLVEFNFHVGRGVGRGGDE
GERGRTRGGKQRHQPQTSGRSNDEVVVKEEEEEEEEEEGEAIQSALVAWI
GKVMHSAFSMKEEEEGGKQVPTLNGLEGTLDCGVAEENDEEEGEEDEDED
EDDVDEEEDEEDEEDEGKANKGDAVVELMHLVYIA*
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mRNA from alignment at chr22:469717..471269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01600.1 ID=NO22G01600.1|Name=NO22G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp|location=Sequence derived from alignment at chr22:469717..471269+ (Nannochloropsis oceanica)
ATGATGCTTCTGCACCACCACCACCGCCACTACGCCACTCCTAGCCTTAA
GCTGCTAGCAATAGTTATCCTTTCCTTACTTTTTGTGCCCACGAAAGCCT
TCTGGCCACCACCTTCCTCCCCTTCTCCTTGCATTCTCCGGCAGCAGTCT
CGGTACCACCATCCGCCACGCATTCTCTCTGCCATAACCCACAACACCGA
CGACCTCCAGCAACCCCTCCCGCCCTCCCTCCCTCCCCCTCTTCTCCTTC
ACATCGCCTACGACGGTAGTCAATACAAAGTCTGGAAGGACAAAGTGATA
CACGACTCAACCCTACCCCTATCTAGCGATGGCAAGAACGGCGCCAAAAG
CAACAACAACAGTAATAGGAATATAAAGAGTGTCCGAAGAAAAAAAGGGT
TCTTCGCCAACCACCCTCCTTCCCTCCACCATCGTCTTGGCACCGCCCTT
TCCATCATTCACTCTCACGCCCCCCTTGCCTCCCTCCTCCTCACTCCCGC
AATCATCACCTCTGGGGGGGTCCACGCCCGGGCGCAACTGCTTTCCTATC
AACCACCTTGCAGCAGCAGCAGCAGCAGCAGCGGTAGCGGCATTAGTAGC
GGCGGTGGCAGCATCAGCGCCAATGATCCGTTTAACGGTGACTTGACCAA
GGCAGCCCATGCACTCAATCGGCTCTTACCCGATGACTTGAGAATATTTT
CCATTTGCCCGTTGCCTTGGGTGGGATTCGACTTAAAGAAGGACTTAGTA
TGCATGCGGTTCTCATATACAGTGATGATAGGCCCTGTCGGCGACCCCAG
TCTGCGACATCGTGCGTGGTTGTTCACTCCATCGTCGATAAGAGAGGAGG
TAAGGAACGAGGAGGGGTTGAGGAAGGTCCAACATGCAGTAGCAGCAGCA
GCAGCGGCGCCAGCAATGGAGACGGGGAGCTTGGAACTAAACAAAGTTGA
AGTAGAGGGGAAGTGGGGCCCGGGTGTACATGAGGCAAGAGCAAGACTGG
TCGAGTTTAATTTTCATGTGGGACGAGGAGTAGGAAGGGGAGGAGACGAA
GGAGAAAGAGGAAGAACAAGAGGAGGAAAGCAGAGGCATCAGCCGCAGAC
TAGTGGTAGAAGTAATGACGAGGTGGTGGTGAAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGAGAGGCAATACAGAGTGCCCTGGTGGCATGGATA
GGCAAAGTCATGCACAGTGCTTTCTCGATGAAAGAGGAGGAGGAAGGGGG
GAAGCAAGTGCCAACATTGAATGGGTTGGTGCTTGAGTCGTTGACATTTC
AGCAGCGGCAACAACAGGGGTGGGGAAGAGAAGGGCAACTATGGGTGGTT
GAAGATCCTTATTCAAAAAGCAGGAAGGGACTTTAGACTGTGGTGTAGCG
GAGGAGAATGACGAGGAGGAGGGCGAGGAGGATGAGGATGAGGATGAGGA
TGATGTGGACGAGGAAGAGGACGAGGAGGACGAGGAGGACGAGGGAAAAG
CGAACAAGGGTGATGCTGTCGTGGAATTGATGCATCTCGTGTACATAGCA
TAA
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Coding sequence (CDS) from alignment at chr22:469717..471269+

>NO22G01600.1 ID=NO22G01600.1|Name=NO22G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr22:469717..471269+ (Nannochloropsis oceanica)
ATGATGCTTCTGCACCACCACCACCGCCACTACGCCACTCCTAGCCTTAA
GCTGCTAGCAATAGTTATCCTTTCCTTACTTTTTGTGCCCACGAAAGCCT
TCTGGCCACCACCTTCCTCCCCTTCTCCTTGCATTCTCCGGCAGCAGTCT
CGGTACCACCATCCGCCACGCATTCTCTCTGCCATAACCCACAACACCGA
CGACCTCCAGCAACCCCTCCCGCCCTCCCTCCCTCCCCCTCTTCTCCTTC
ACATCGCCTACGACGGTAGTCAATACAAAGTCTGGAAGGACAAAGTGATA
CACGACTCAACCCTACCCCTATCTAGCGATGGCAAGAACGGCGCCAAAAG
CAACAACAACAGTAATAGGAATATAAAGAGTGTCCGAAGAAAAAAAGGGT
TCTTCGCCAACCACCCTCCTTCCCTCCACCATCGTCTTGGCACCGCCCTT
TCCATCATTCACTCTCACGCCCCCCTTGCCTCCCTCCTCCTCACTCCCGC
AATCATCACCTCTGGGGGGGTCCACGCCCGGGCGCAACTGCTTTCCTATC
AACCACCTTGCAGCAGCAGCAGCAGCAGCAGCGGTAGCGGCATTAGTAGC
GGCGGTGGCAGCATCAGCGCCAATGATCCGTTTAACGGTGACTTGACCAA
GGCAGCCCATGCACTCAATCGGCTCTTACCCGATGACTTGAGAATATTTT
CCATTTGCCCGTTGCCTTGGGTGGGATTCGACTTAAAGAAGGACTTAGTA
TGCATGCGGTTCTCATATACAGTGATGATAGGCCCTGTCGGCGACCCCAG
TCTGCGACATCGTGCGTGGTTGTTCACTCCATCGTCGATAAGAGAGGAGG
TAAGGAACGAGGAGGGGTTGAGGAAGGTCCAACATGCAGTAGCAGCAGCA
GCAGCGGCGCCAGCAATGGAGACGGGGAGCTTGGAACTAAACAAAGTTGA
AGTAGAGGGGAAGTGGGGCCCGGGTGTACATGAGGCAAGAGCAAGACTGG
TCGAGTTTAATTTTCATGTGGGACGAGGAGTAGGAAGGGGAGGAGACGAA
GGAGAAAGAGGAAGAACAAGAGGAGGAAAGCAGAGGCATCAGCCGCAGAC
TAGTGGTAGAAGTAATGACGAGGTGGTGGTGAAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGGAGAGGCAATACAGAGTGCCCTGGTGGCATGGATA
GGCAAAGTCATGCACAGTGCTTTCTCGATGAAAGAGGAGGAGGAAGGGGG
GAAGCAAGTGCCAACATTGAATGGGTTGGAAGGGACTTTAGACTGTGGTG
TAGCGGAGGAGAATGACGAGGAGGAGGGCGAGGAGGATGAGGATGAGGAT
GAGGATGATGTGGACGAGGAAGAGGACGAGGAGGACGAGGAGGACGAGGG
AAAAGCGAACAAGGGTGATGCTGTCGTGGAATTGATGCATCTCGTGTACA
TAGCATAA
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Synonyms
Publications