NO22G01470, NO22G01470 (gene) Nannochloropsis oceanica

Overview
NameNO22G01470
Unique NameNO22G01470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1187
Alignment locationchr22:432596..433782 -

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Properties
Property NameValue
DescriptionAlanyl-tRNA synthetase, class IIc
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:432596..433782 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0004813alanine-tRNA ligase activity
GO:0005524ATP binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006419alanyl-tRNA aminoacylation
GO:0043039tRNA aminoacylation
Vocabulary: INTERPRO
TermDefinition
IPR018163Thr/Ala-tRNA-synth_IIc_edit
IPR009000Transl_B-barrel
IPR018165Ala-tRNA-synth_IIc_core
IPR018164Ala-tRNA-synth_IIc_N
IPR012947tRNA_SAD
Homology
BLAST of NO22G01470 vs. NCBI_GenBank
Match: EWM21502.1 (Alanyl-tRNA synthetase, class IIc [Nannochloropsis gaditana])

HSP 1 Score: 301.6 bits (771), Expect = 2.700e-78
Identity = 162/288 (56.25%), Postives = 203/288 (70.49%), Query Frame = 0
Query:    9 TERLYLDDTHLYTTTSTVLAVEPV---TVPGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNLCLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRL-KVGAEEEV 293
            T+R YL+DT+LY  +ST+LAVEP+   T  G      F +V   TVFHPQGGGQPSDVG +V  G+ GVTF VD+VR GE  +IYH+GT      ++EDG               +PF  G+ V LEIDA  RRLH+RLHSAGHALDVAVL+LG++LRP+KGYHF+D P+VEY GRL  + G++  +  ALT K++ L+E DI  E+  TSK +AA +L GG  DVAHF E A VRLVSVGGN+C CGGTHVKST EL  VE+T+IKTKK+VT+ISYR+ K G E ++
Sbjct:    9 TQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVV--GENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDG------------ARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRISKEGKERQI 282          
BLAST of NO22G01470 vs. NCBI_GenBank
Match: XP_005856270.1 (alanyl-trna synthetase, partial [Nannochloropsis gaditana CCMP526] >EKU20086.1 alanyl-trna synthetase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 273.1 bits (697), Expect = 1.000e-69
Identity = 143/244 (58.61%), Postives = 177/244 (72.54%), Query Frame = 0
Query:   50 TVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNLCLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRL-KVGAEEEV 293
            TVFHPQGGGQPSDVG +V  G+ GVTF VD+VR GE  +IYH+GT      ++EDG               +PF  G+ V LEIDA  RRLH+RLHSAGHALDVAVL+LG++LRP+KGYHF+D P+VEY GRL  + G++  +  ALT K++ L+E DI  E+  TSK +AA +L GG  DVAHF E A VRLVSVGGN+C CGGTHVKST EL  VE+T+IKTKK+VT+ISYR+ K G E ++
Sbjct:    3 TVFHPQGGGQPSDVGRVV--GENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDG------------ARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRISKEGKERQI 232          
BLAST of NO22G01470 vs. NCBI_GenBank
Match: AML47757.1 (putative alanyl-tRNA synthase [Triticum aestivum] >AOZ21501.1 putative alanyl-tRNA synthetase [Triticum aestivum])

HSP 1 Score: 167.5 bits (423), Expect = 6.100e-38
Identity = 107/283 (37.81%), Postives = 145/283 (51.24%), Query Frame = 0
Query:    3 SCPLRPTERLYLDDTHLYTTTSTVLAVEPVTVPGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNL-CLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRL 285
            + P  PT   Y DD      T+TVL++        ++  R  VV +ATVFHPQGGGQP+D G IV    AG  F+V+ VR  + GV  H+G           G                 F  GQ+VTLE+DA+ R+L+SRLHSAGH LD  +  LG+ L P KGYHF D P VEY G  +  A    +    L ++   L+       V V    +AAKL  G     ++  +++  R+V  G    C CGGTHV    ++G V+VT I+ KK VT++SY +
Sbjct:    2 AAPAGPTRLAYFDDMWALRATTTVLSLH------QEEGGRRAVVLDATVFHPQGGGQPADTGVIVSASGAGARFLVEDVRV-KDGVALHYGRFEDAAAGDGCG---------------ADFTQGQSVTLEVDAERRKLNSRLHSAGHLLDSCMTNLGLHLEPGKGYHFPDGPSVEYKG--VVPADQLQDKKIQLEKEANELISKGSKVLVSVFPYEEAAKLCGGALP--SYILQDSTPRIVKFGNYPGCPCGGTHVADIADIGNVKVTNIRVKKGVTKVSYSI 258          
BLAST of NO22G01470 vs. NCBI_GenBank
Match: CBH32647.1 (alanyl-tRNA synthetase, putative, expressed [Triticum aestivum] >CDM80421.1 unnamed protein product [Triticum aestivum])

HSP 1 Score: 164.1 bits (414), Expect = 6.800e-37
Identity = 103/283 (36.40%), Postives = 144/283 (50.88%), Query Frame = 0
Query:    3 SCPLRPTERLYLDDTHLYTTTSTVLAVEPVTVPGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNL-CLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRL 285
            + P  PT   Y DD       +TVL++        ++  R  VV +ATVFHPQGGGQP+D G IV     G  F+V+ VR  + GV++H+G         E                      GQ+V+LEIDA+ R+L+SRLHSAGH LD  +  LG+ L P KGYHF D P VEY G  +  A    +    L ++   L+       V V    +AAKL  G     ++  +++  R+V  G    C CGGTHV    ++G ++VT I+ KK VT++SY +
Sbjct:    2 AAPAGPTRLAYFDDMWALRAPATVLSLH------QEEGGRRAVVLDATVFHPQGGGQPADTGAIVSAAGTGARFLVEDVRV-KDGVVFHYGRFEDAAAGEE-------------------LSQGQSVSLEIDAERRKLNSRLHSAGHLLDSCMTNLGLHLEPGKGYHFPDGPSVEYKG--VVPADQLQDKKIQLEKEANELISKGSKVLVSVFPYEEAAKLCGGALP--SYIPQDSTPRIVKFGNYPGCPCGGTHVADIADIGNLKVTNIRVKKGVTKVSYSI 254          
BLAST of NO22G01470 vs. NCBI_GenBank
Match: XP_004339020.1 (threonine/alanine tRNA ligase subfamily protein [Acanthamoeba castellanii str. Neff] >ELR17007.1 threonine/alanine tRNA ligase subfamily protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 163.7 bits (413), Expect = 8.800e-37
Identity = 114/285 (40.00%), Postives = 143/285 (50.18%), Query Frame = 0
Query:    7 RPTERLYLDDTHLYTTTSTVLAV--EPVTVPGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSG-EGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQL--GMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVT-SKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNL-CLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRL 285
            R TE+ Y +DT+ +  T+ V+ V   P        +  F VV + T+FHPQGGGQP D G +     AGV F V  VR+  E GVI H GT A                          F  G  V L+ID   RRLH+RLHSAGH LD AV  L     L P KGYHF DAPYVEY G  +P A         L ++   L+       V+V  SK +  +L     D  A+  E   VR+V+V   L C CGGTHV++TGE+G + + K+  KK V RISY L
Sbjct:    4 RRTEQAYWEDTYRFRDTAHVVQVAEHPPPRGSAAGASYFAVVLDRTIFHPQGGGQPFDTGVVA--SAAGVKFTVSEVRANREDGVIQHIGTFAEA---------------------GTTFQAGDEVELQIDEAKRRLHARLHSAGHLLDKAVANLFPEYNLIPDKGYHFADAPYVEYKGTFVP-ADKRQSALKRLEDECNRLIAEGSEVTVQVVHSKEEVERLCGSASDSGANPTEP--VRVVTVCAPLGCPCGGTHVQNTGEIGRIAIPKMSAKKGVVRISYTL 262          
BLAST of NO22G01470 vs. NCBI_GenBank
Match: GBG35074.1 (Cysteine desulfurase, mitochondrial, partial [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 160.6 bits (405), Expect = 7.500e-36
Identity = 106/284 (37.32%), Postives = 141/284 (49.65%), Query Frame = 0
Query:    8 PTERLYLDDTHLY-TTTSTVLAVEPVTV------PGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEAL-VRLVSVGGNL-CLCGGTHVKSTGELGMVEVTKIKTKKDVTRISY 283
            PT   Y+DDTH +    + VL VE V        P    + RF ++  AT+FHPQGGGQPSDVG I+ D  +G  FVVD V     G + H G    +                          VG  V L ID   RR H+R+HSAGH LD A+   G  L P+KGYHF   P V+Y G +   A     +  A+ +    L++  IP  V  T   +A +    G    +   ++A  +RLV VGG+  C CGGTHVK+T E+G V + K+++KK   RISY
Sbjct:  372 PTRLAYMDDTHCFKMDDAQVLKVEAVESAPKTDDPSTPTNERFCIILNATIFHPQGGGQPSDVGEII-DVASGTRFVVDHVEKDANGCVRHLGEFQGSQPS--------------------AIVVGSQVNLVIDERKRRFHARIHSAGHVLDQAMRLAGCSLLPTKGYHFPSGPSVDYAGSV--PAAERAALQDAVEKHANALIQQAIPTRVLQTRIAEAGEYCLDGLAPSSDGIDDAKDIRLVLVGGDRGCPCGGTHVKNTSEIGAVRIRKLQSKKGNLRISY 632          
BLAST of NO22G01470 vs. NCBI_GenBank
Match: BAJ95202.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 159.8 bits (403), Expect = 1.300e-35
Identity = 101/283 (35.69%), Postives = 146/283 (51.59%), Query Frame = 0
Query:    3 SCPLRPTERLYLDDTHLYTTTSTVLAVEPVTVPGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGG-NLCLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRL 285
            + P  PT   Y DD       + VL+V        ++  R  VV +AT+FHPQGGGQP+D G IV    +   F+V+ VR  + GV++H+G       +  DG                    GQ+V++EIDAD R+L+SRLHSAGH LD  +  LG+ + P KGYHF D P+VEY G  +       +    L ++   L+       V V    +AAKL  G     ++ +E++  R+V  G    C CGGTHV    ++G ++VT I+ KK VT++SY +
Sbjct:    2 AAPAGPTRLAYFDDMWALRAPAAVLSVHQAPGCPQEEGGRRAVVLDATIFHPQGGGQPADTGVIV----SAARFLVEDVRV-KDGVVFHYGRF-----EDADGE---------------ELSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCMTNLGLHMEPGKGYHFPDGPFVEYKG--VVPTDQLQDTKIQLEKEANELISKGAKVLVSVFPYEEAAKLCGGALP--SYISEDSTPRIVKFGDCPGCPCGGTHVADITDIGNLKVTNIRVKKGVTKVSYSI 255          
BLAST of NO22G01470 vs. NCBI_GenBank
Match: BAJ98165.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 157.5 bits (397), Expect = 6.300e-35
Identity = 101/283 (35.69%), Postives = 146/283 (51.59%), Query Frame = 0
Query:    3 SCPLRPTERLYLDDTHLYTTTSTVLAVEPVTVPGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGG-NLCLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRL 285
            + P  PT   Y DD       + VL+V        ++  R  VV +AT+FHPQGGGQP+D G IV    +   F+V+ VR  + GV++H+G       +  DG                    GQ+V++EIDAD R+L+SRLHSAGH LD  +  LG+ + P KGYHF D P+VEY G  +       +    L ++   L+       V V    +AAKL  G     ++ +E++  R+V  G    C CGGTHV    ++G ++VT I+ KK VT++SY +
Sbjct:    2 AAPAGPTRLAYFDDMWALRAPAAVLSVH------QEEGGRRAVVLDATIFHPQGGGQPADTGVIV----SAARFLVEDVRV-KDGVVFHYGRF-----EDADGE---------------ELSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCMTNLGLHMEPGKGYHFPDGPFVEYKG--VVPTDQLQDTKIQLEKEANELISKGAKVLVSVFPYEEAAKLCGGALP--SYISEDSTPRIVKFGDCPGCPCGGTHVADITDIGNLKVTNIRVKKGVTKVSYSI 249          
BLAST of NO22G01470 vs. NCBI_GenBank
Match: XP_003567700.1 (uncharacterized protein LOC100840915 [Brachypodium distachyon] >KQK02451.1 hypothetical protein BRADI_2g01511v3 [Brachypodium distachyon])

HSP 1 Score: 157.1 bits (396), Expect = 8.300e-35
Identity = 105/287 (36.59%), Postives = 150/287 (52.26%), Query Frame = 0
Query:    8 PTERL-YLDDTHLYTTTSTVLAVEPVTVPGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDG-DAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPE-----AGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNL-CLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRLKV 287
            PT RL Y DD     + + VL++        ++  R  VV +AT+FHPQGGGQP+D G I   G  AG  F+V+ VR  + GV++H+G      D   DG                    GQ VTLEID + R L+SRLHSAGH LD  V   G+   P KGYHF D P+VEY G + P+          +VA  L  K + ++ +  P+E       +AAKL  G     ++  E++  R+V  G +  C CGGTHV    ++G ++VT ++ KK +T++SY + +
Sbjct:    7 PTTRLAYFDDMWAVHSQAAVLSLH------QEEGGRRAVVLDATIFHPQGGGQPADTGVISAAGAGAGARFLVEDVRM-KDGVVFHYGRF---EDAAGDGCRTELIE-------------GQNVTLEIDVERRNLNSRLHSAGHLLDFCVSNAGLHFEPGKGYHFPDGPFVEYKGVVPPDQLQVKKQELEKVANELISKGEKVLVSVFPYE-------EAAKLCGGALP--SYIPEDSTPRIVKFGDHPGCPCGGTHVADIADIGNLKVTNMRVKKGITKVSYSISL 261          
BLAST of NO22G01470 vs. NCBI_GenBank
Match: XP_020190630.1 (uncharacterized protein LOC109776404 [Aegilops tauschii subsp. tauschii] >CCG48002.1 alanyl-tRNA synthetase, putative, expressed [Triticum aestivum])

HSP 1 Score: 156.8 bits (395), Expect = 1.100e-34
Identity = 102/283 (36.04%), Postives = 145/283 (51.24%), Query Frame = 0
Query:    3 SCPLRPTERLYLDDTHLYTTTSTVLAVEPVTVPGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGXXXXXXXXXXXXXXXLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNL-CLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRL 285
            + P   T   Y +D       +TVL++        ++  R  VV +ATVFHPQGGGQP+D G IV     G  F+V+ VR  + GV++H+G           G                 F  GQ+VTLE+DA+ R+L+SRLHSAGH LD  +  LG+ L P KGYHF D P VEY G  +  A    +    L ++   L+       V V    +AAKL  G     ++ ++++  R+V  G    C CGGTHV    ++G ++VT I+ KK VT++SY +
Sbjct:    2 AAPAGHTRLAYFEDMWALRAPATVLSLH------QEEGGRRAVVLDATVFHPQGGGQPADTGVIV-SASGGARFLVEDVRV-KDGVVFHYGRFEDAAAGDGCG---------------AEFTKGQSVTLEVDAERRKLNSRLHSAGHLLDSCMTNLGLHLEPGKGYHFPDGPSVEYKG--VVPADQLQDKKIQLEKEANELILKGSKVLVSVFPYEEAAKLCGGALP--SYISQDSTPRIVKFGDYPGCPCGGTHVADIADIGNLKVTNIRVKKGVTKVSYSI 257          
The following BLAST results are available for this feature:
BLAST of NO22G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21502.12.700e-7856.25Alanyl-tRNA synthetase, class IIc [Nannochloropsis... [more]
XP_005856270.11.000e-6958.61alanyl-trna synthetase, partial [Nannochloropsis g... [more]
AML47757.16.100e-3837.81putative alanyl-tRNA synthase [Triticum aestivum] ... [more]
CBH32647.16.800e-3736.40alanyl-tRNA synthetase, putative, expressed [Triti... [more]
XP_004339020.18.800e-3740.00threonine/alanine tRNA ligase subfamily protein [A... [more]
GBG35074.17.500e-3637.32Cysteine desulfurase, mitochondrial, partial [Aura... [more]
BAJ95202.11.300e-3535.69predicted protein [Hordeum vulgare subsp. vulgare][more]
BAJ98165.16.300e-3535.69predicted protein [Hordeum vulgare subsp. vulgare][more]
XP_003567700.18.300e-3536.59uncharacterized protein LOC100840915 [Brachypodium... [more]
XP_020190630.11.100e-3436.04uncharacterized protein LOC109776404 [Aegilops tau... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004114NSK004114Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01470.1NO22G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595815gene_7155Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g68gene8927Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01470.1NO22G01470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01470 ID=NO22G01470|Name=NO22G01470|organism=Nannochloropsis oceanica|type=gene|length=1187bp
ACGCTGCTTGCTTCTCCGCCGGGCGGCACCTGCATCATATTCACACGAGC
ACTTATTACCAACCATTCATACGTCCTCGGCTAGCCATAGAGAGCCGTCA
CTATACTTCCTGCACACCATAGGAGTGATCTCTCCATCTCTATTGCGAAG
AAACGTCGTCTTCTCCCAAGCAACATGACCTCCTGTCCCCTCCGTCCGAC
CGAACGACTCTACCTGGACGACACGCACCTGTATACGACGACGTCCACCG
TGTTGGCCGTGGAGCCTGTGACCGTCCCGGGTGATAAAGACTCGATGCGT
TTCACTGTGGTGACCGAGGCCACAGTATTCCATCCGCAAGGCGGAGGACA
GCCATCTGACGTGGGATGCATCGTTTGCGATGGTGATGCTGGCGTCACCT
TTGTCGTTGACAGCGTGCGAAGTGGCGAGGGCGGGGTCATTTATCATTTT
GGCACCTTGGCTTCCACCACAGACCAGCACGAGGACGGGAATAGTAGCAA
CAGCAGCAGCAGCTGCAGCAATTGCAGCATTTGCCTTCCTTTTCATGTCG
GCCAGGCAGTAACACTCGAGATTGACGCGGATAGCCGACGGCTCCACTCC
CGCTTGCACTCGGCGGGCCATGCCTTGGACGTGGCGGTCCTTCAACTAGG
CATGCAACTTCGACCATCGAAAGGGTATCACTTTCAAGACGCGCCGTATG
TCGAATACTTTGGACGGCTTCTTCCAGAGGCTGGCACCGCCGTTGAAGTT
GCTACGGCACTCACAGAGAAAATGAAGACATTAGTTGAAGCTGACATTCC
TTTTGAAGTAAAGGTTACTTCAAAGGTGGATGCAGCTAAGCTGTTGCCAG
GGGGGAAGGACGACGTGGCCCATTTTGCGGAGGAGGCGCTGGTGAGGTTG
GTCTCAGTGGGGGGAAATTTGTGCCTGTGTGGAGGGACCCATGTGAAGAG
CACAGGCGAGTTGGGCATGGTAGAAGTGACCAAGATTAAAACAAAAAAGG
ATGTGACGAGGATCAGTTATCGGTTGAAGGTTGGCGCGGAGGAGGAAGTG
AAGAAGTGCAGTGAGGTCTAAGGGTATACGGGGAAGAGGAAGTGGATGCA
TATAAATAGTACTTTGTGAGATGTAGCTGAAGGATAAGACGGAGCAACAC
GACAAACTAAACATCTTGTATAATCAAAAAAGAGACG
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protein sequence of NO22G01470.1

>NO22G01470.1-protein ID=NO22G01470.1-protein|Name=NO22G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MTSCPLRPTERLYLDDTHLYTTTSTVLAVEPVTVPGDKDSMRFTVVTEAT
VFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTD
QHEDGNSSNSSSSCSNCSICLPFHVGQAVTLEIDADSRRLHSRLHSAGHA
LDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKM
KTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNLC
LCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRLKVGAEEEVKKCSEV*
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