NO22G01470.1, NO22G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01470.1
Unique NameNO22G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1187
Alignment locationchr22:432596..433782 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:432596..433782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO22G01470.1 vs.
Match: EWM21502.1 (Alanyl-tRNA synthetase, class IIc [Nannochloropsis gaditana])

HSP 1 Score: 304.3 bits (778), Expect = 4.200e-79
Identity = 163/288 (56.60%), Postives = 205/288 (71.18%), Query Frame = 0 
Query:    9 TERLYLDDTHLYTTTSTVLAVEPV---TVPGDKDSMRFTVVTEATVFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTDQHEDGNSSNSSSSCSNCSICLPFHVGQAVTLEIDADSRRLHSRLHSAGHALDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKMKTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNLCLCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRL-KVGAEEEV 293
            T+R YL+DT+LY  +ST+LAVEP+   T  G      F +V   TVFHPQGGGQPSDVG +V  G+ GVTF VD+VR GE  +IYH+GT      ++EDG            + C+PF  G+ V LEIDA  RRLH+RLHSAGHALDVAVL+LG++LRP+KGYHF+D P+VEY GRL  + G++  +  ALT K++ L+E DI  E+  TSK +AA +L GG  DVAHF E A VRLVSVGGN+C CGGTHVKST EL  VE+T+IKTKK+VT+ISYR+ K G E ++
Sbjct:    9 TQRRYLNDTYLYDISSTILAVEPMPPDTSAGSNKMPYFGLVIAETVFHPQGGGQPSDVGRVV--GENGVTFFVDNVRVGENAIIYHYGTFQHEMSENEDG------------ARCIPFRSGEKVKLEIDAARRRLHARLHSAGHALDVAVLRLGLELRPTKGYHFEDHPFVEYLGRLPADKGSSERLIEALTLKIQELIEEDIATELYSTSKAEAASILSGGVKDVAHFPEGAQVRLVSVGGNICPCGGTHVKSTKELRGVEITRIKTKKNVTKISYRISKEGKERQI 282
The following BLAST results are available for this feature:
BLAST of NO22G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21502.14.200e-7956.60Alanyl-tRNA synthetase, class IIc [Nannochloropsis... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01470NO22G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01470.1NO22G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01470.1.cds1NO22G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01470.1 ID=NO22G01470.1|Name=NO22G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1187bp
ACGCTGCTTGCTTCTCCGCCGGGCGGCACCTGCATCATATTCACACGAGC
ACTTATTACCAACCATTCATACGTCCTCGGCTAGCCATAGAGAGCCGTCA
CTATACTTCCTGCACACCATAGGAGTGATCTCTCCATCTCTATTGCGAAG
AAACGTCGTCTTCTCCCAAGCAACATGACCTCCTGTCCCCTCCGTCCGAC
CGAACGACTCTACCTGGACGACACGCACCTGTATACGACGACGTCCACCG
TGTTGGCCGTGGAGCCTGTGACCGTCCCGGGTGATAAAGACTCGATGCGT
TTCACTGTGGTGACCGAGGCCACAGTATTCCATCCGCAAGGCGGAGGACA
GCCATCTGACGTGGGATGCATCGTTTGCGATGGTGATGCTGGCGTCACCT
TTGTCGTTGACAGCGTGCGAAGTGGCGAGGGCGGGGTCATTTATCATTTT
GGCACCTTGGCTTCCACCACAGACCAGCACGAGGACGGGAATAGTAGCAA
CAGCAGCAGCAGCTGCAGCAATTGCAGCATTTGCCTTCCTTTTCATGTCG
GCCAGGCAGTAACACTCGAGATTGACGCGGATAGCCGACGGCTCCACTCC
CGCTTGCACTCGGCGGGCCATGCCTTGGACGTGGCGGTCCTTCAACTAGG
CATGCAACTTCGACCATCGAAAGGGTATCACTTTCAAGACGCGCCGTATG
TCGAATACTTTGGACGGCTTCTTCCAGAGGCTGGCACCGCCGTTGAAGTT
GCTACGGCACTCACAGAGAAAATGAAGACATTAGTTGAAGCTGACATTCC
TTTTGAAGTAAAGGTTACTTCAAAGGTGGATGCAGCTAAGCTGTTGCCAG
GGGGGAAGGACGACGTGGCCCATTTTGCGGAGGAGGCGCTGGTGAGGTTG
GTCTCAGTGGGGGGAAATTTGTGCCTGTGTGGAGGGACCCATGTGAAGAG
CACAGGCGAGTTGGGCATGGTAGAAGTGACCAAGATTAAAACAAAAAAGG
ATGTGACGAGGATCAGTTATCGGTTGAAGGTTGGCGCGGAGGAGGAAGTG
AAGAAGTGCAGTGAGGTCTAAGGGTATACGGGGAAGAGGAAGTGGATGCA
TATAAATAGTACTTTGTGAGATGTAGCTGAAGGATAAGACGGAGCAACAC
GACAAACTAAACATCTTGTATAATCAAAAAAGAGACG
back to top

protein sequence of NO22G01470.1

>NO22G01470.1-protein ID=NO22G01470.1-protein|Name=NO22G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MTSCPLRPTERLYLDDTHLYTTTSTVLAVEPVTVPGDKDSMRFTVVTEAT
VFHPQGGGQPSDVGCIVCDGDAGVTFVVDSVRSGEGGVIYHFGTLASTTD
QHEDGNSSNSSSSCSNCSICLPFHVGQAVTLEIDADSRRLHSRLHSAGHA
LDVAVLQLGMQLRPSKGYHFQDAPYVEYFGRLLPEAGTAVEVATALTEKM
KTLVEADIPFEVKVTSKVDAAKLLPGGKDDVAHFAEEALVRLVSVGGNLC
LCGGTHVKSTGELGMVEVTKIKTKKDVTRISYRLKVGAEEEVKKCSEV*
back to top

mRNA from alignment at chr22:432596..433782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01470.1 ID=NO22G01470.1|Name=NO22G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1187bp|location=Sequence derived from alignment at chr22:432596..433782- (Nannochloropsis oceanica)
ACGCTGCTTGCTTCTCCGCCGGGCGGCACCTGCATCATATTCACACGAGC
ACTTATTACCAACCATTCATACGTCCTCGGCTAGCCATAGAGAGCCGTCA
CTATACTTCCTGCACACCATAGGAGTGATCTCTCCATCTCTATTGCGAAG
AAACGTCGTCTTCTCCCAAGCAACATGACCTCCTGTCCCCTCCGTCCGAC
CGAACGACTCTACCTGGACGACACGCACCTGTATACGACGACGTCCACCG
TGTTGGCCGTGGAGCCTGTGACCGTCCCGGGTGATAAAGACTCGATGCGT
TTCACTGTGGTGACCGAGGCCACAGTATTCCATCCGCAAGGCGGAGGACA
GCCATCTGACGTGGGATGCATCGTTTGCGATGGTGATGCTGGCGTCACCT
TTGTCGTTGACAGCGTGCGAAGTGGCGAGGGCGGGGTCATTTATCATTTT
GGCACCTTGGCTTCCACCACAGACCAGCACGAGGACGGGAATAGTAGCAA
CAGCAGCAGCAGCTGCAGCAATTGCAGCATTTGCCTTCCTTTTCATGTCG
GCCAGGCAGTAACACTCGAGATTGACGCGGATAGCCGACGGCTCCACTCC
CGCTTGCACTCGGCGGGCCATGCCTTGGACGTGGCGGTCCTTCAACTAGG
CATGCAACTTCGACCATCGAAAGGGTATCACTTTCAAGACGCGCCGTATG
TCGAATACTTTGGACGGCTTCTTCCAGAGGCTGGCACCGCCGTTGAAGTT
GCTACGGCACTCACAGAGAAAATGAAGACATTAGTTGAAGCTGACATTCC
TTTTGAAGTAAAGGTTACTTCAAAGGTGGATGCAGCTAAGCTGTTGCCAG
GGGGGAAGGACGACGTGGCCCATTTTGCGGAGGAGGCGCTGGTGAGGTTG
GTCTCAGTGGGGGGAAATTTGTGCCTGTGTGGAGGGACCCATGTGAAGAG
CACAGGCGAGTTGGGCATGGTAGAAGTGACCAAGATTAAAACAAAAAAGG
ATGTGACGAGGATCAGTTATCGGTTGAAGGTTGGCGCGGAGGAGGAAGTG
AAGAAGTGCAGTGAGGTCTAAGGGTATACGGGGAAGAGGAAGTGGATGCA
TATAAATAGTACTTTGTGAGATGTAGCTGAAGGATAAGACGGAGCAACAC
GACAAACTAAACATCTTGTATAATCAAAAAAGAGACG
back to top

Coding sequence (CDS) from alignment at chr22:432596..433782-

>NO22G01470.1 ID=NO22G01470.1|Name=NO22G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr22:432596..433782- (Nannochloropsis oceanica)
ATGACCTCCTGTCCCCTCCGTCCGACCGAACGACTCTACCTGGACGACAC
GCACCTGTATACGACGACGTCCACCGTGTTGGCCGTGGAGCCTGTGACCG
TCCCGGGTGATAAAGACTCGATGCGTTTCACTGTGGTGACCGAGGCCACA
GTATTCCATCCGCAAGGCGGAGGACAGCCATCTGACGTGGGATGCATCGT
TTGCGATGGTGATGCTGGCGTCACCTTTGTCGTTGACAGCGTGCGAAGTG
GCGAGGGCGGGGTCATTTATCATTTTGGCACCTTGGCTTCCACCACAGAC
CAGCACGAGGACGGGAATAGTAGCAACAGCAGCAGCAGCTGCAGCAATTG
CAGCATTTGCCTTCCTTTTCATGTCGGCCAGGCAGTAACACTCGAGATTG
ACGCGGATAGCCGACGGCTCCACTCCCGCTTGCACTCGGCGGGCCATGCC
TTGGACGTGGCGGTCCTTCAACTAGGCATGCAACTTCGACCATCGAAAGG
GTATCACTTTCAAGACGCGCCGTATGTCGAATACTTTGGACGGCTTCTTC
CAGAGGCTGGCACCGCCGTTGAAGTTGCTACGGCACTCACAGAGAAAATG
AAGACATTAGTTGAAGCTGACATTCCTTTTGAAGTAAAGGTTACTTCAAA
GGTGGATGCAGCTAAGCTGTTGCCAGGGGGGAAGGACGACGTGGCCCATT
TTGCGGAGGAGGCGCTGGTGAGGTTGGTCTCAGTGGGGGGAAATTTGTGC
CTGTGTGGAGGGACCCATGTGAAGAGCACAGGCGAGTTGGGCATGGTAGA
AGTGACCAAGATTAAAACAAAAAAGGATGTGACGAGGATCAGTTATCGGT
TGAAGGTTGGCGCGGAGGAGGAAGTGAAGAAGTGCAGTGAGGTCTAA
back to top
Synonyms
Publications