NO22G01410, NO22G01410 (gene) Nannochloropsis oceanica

Overview
NameNO22G01410
Unique NameNO22G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1329
Alignment locationchr22:417137..418465 -

Link to JBrowse

Properties
Property NameValue
DescriptionMajor intrinsic protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:417137..418465 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0015267channel activity
Homology
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BLAST of NO22G01410 vs. NCBI_GenBank
Match: EWM21491.1 (Major intrinsic protein [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 1.300e-80
Identity = 163/303 (53.80%), Postives = 208/303 (68.65%), Query Frame = 0 
Query:   77 MFDKLWDGLCLAEAFGAETMAVTVWTVFVCLLRALLFSIRVFVWVPNALVFANPFLMERFLQAFRNKASPFSSSLLSSIKRNSNG--YAXXXXXXXXXXXXXXXXXXXVFPSSLTCRTRVVPHLPVRIAESLLGRTPSILVLLPAHFLGGIMGVTIVKLFLGPSSFTQSYSARALLPIIYGGSNGDAAPLLLLGWWVFIKEILVTALYVVGLLVLPQVFIINHLPRQCTYACLLPLLLIRLPDQTPAFAPATLFSLWFTSRDTLRAVHGMTSIQYEHVFGPILGGFLAGGVMVACFPDDDVPL 378
            M +KLWD L  AE FG ET+ V +WTV VC LR +LF +++  WVPN+L+FANP+ + RF+ AF         S+ S+ +   NG  +A                      SS  CR  VVP++P+RIAESLLGRTPS+LVL+PAH LGGIMGVT+VKL +G S  +   +A+ALLP++YG S   A   +L+GWWVF++EILVT L+V+  LV+P++ ++N LPR+   AC LPLLL+RLPDQTPAF+PA LFS WFTSRD L   +G+ S+QYEHVFGPILGGFLAG VM  CFPDD  PL
Sbjct:    1 MLEKLWDVLQAAEPFGNETLVVMIWTVCVCSLRIILFLLKIQEWVPNSLIFANPYFVNRFVAAF---------SIKSAARNGGNGHCHAASNTAPDGLCTSSSAPSSVSRASSSACR-GVVPNMPIRIAESLLGRTPSVLVLVPAHLLGGIMGVTLVKLTMGWSPLSCGSAAQALLPVMYGTSVDKANASMLMGWWVFVEEILVTFLFVLSFLVVPELLLVNRLPRKYANACALPLLLVRLPDQTPAFSPAALFSFWFTSRDALHKTYGIASVQYEHVFGPILGGFLAGVVMATCFPDDQTPL 293
The following BLAST results are available for this feature:
BLAST of NO22G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21491.11.300e-8053.80Major intrinsic protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004120NSK004120Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01410.1NO22G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595773gene_7147Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g60gene8934Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01410.1NO22G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01410 ID=NO22G01410|Name=NO22G01410|organism=Nannochloropsis oceanica|type=gene|length=1329bp
CTCGCTGATGACGCCCTTGTCTTGTATTTGCTTTAACCAAAGCGATCATT
CACTCCCGCCCGCTCCCCTTCATAGAACGTCTCCCAAGAGCACCTCCTCC
TTGTCTTCGTATAGCGCCAGGGAGGTGAGTGGTGGCATCCCAACGCGCAG
GCCCCGGGCACACAGGACGCGACCTGGAGACCTCATCATCGCCAACTTGT
TCATTCCCTTTCAGCACTTCACCCAGCCATACACTATGTTTGACAAGCTT
TGGGATGGACTGTGCCTTGCGGAAGCCTTTGGGGCCGAGACAATGGCCGT
CACGGTCTGGACCGTGTTTGTATGTCTGTTGCGGGCTTTGCTCTTCTCCA
TCCGAGTCTTTGTGTGGGTCCCAAATGCATTAGTCTTTGCCAACCCCTTC
CTCATGGAGCGCTTTCTGCAGGCTTTCCGAAACAAGGCATCGCCGTTCTC
ATCGTCATTATTGTCGAGTATCAAGAGGAATAGCAACGGCTACGCTGCTG
CATGCGCCACCATTGCCGACATGTCGTCCTCCTCTTCCTCCTCTTCCTCC
ACCGTCTTCCCATCCTCGTTGACCTGCAGGACGCGAGTGGTACCCCACTT
GCCCGTCCGCATCGCCGAGAGCCTGCTAGGACGAACGCCGTCCATTTTAG
TGCTCTTACCAGCGCATTTCCTCGGGGGGATTATGGGTGTCACAATTGTG
AAACTCTTTCTCGGCCCTAGCTCCTTCACCCAGTCTTACTCAGCGCGAGC
ATTGCTCCCTATTATTTATGGCGGCAGCAATGGTGATGCGGCCCCGCTGT
TACTGCTGGGCTGGTGGGTCTTTATCAAGGAGATCCTAGTGACGGCGCTT
TATGTGGTAGGCTTACTGGTTCTACCTCAGGTGTTTATAATTAATCATTT
GCCGAGACAGTGTACATATGCCTGCTTGCTGCCATTACTGCTTATCCGCC
TTCCCGACCAGACGCCAGCATTTGCGCCCGCAACTCTCTTTTCGCTCTGG
TTCACGAGCAGGGATACATTGCGGGCGGTGCATGGCATGACCTCGATTCA
ATATGAACATGgtgagtgcgtggggttgagagggaacgggttgtgatgca
aatggcaagatcggaaatagaccaggatccctcgagtcatcaccttcgct
cgtttttttatctctattcttcacattcacagTCTTTGGGCCCATCTTGG
GGGGGTTTCTGGCAGGCGGCGTGATGGTGGCATGCTTTCCCGACGATGAT
GTACCGCTGTAGCTGTGTACTCAGTCTTGGAGTAAAAACTAATCAAAGAA
TGTAAATAATGAGCAATTGCAACAAGAAG
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protein sequence of NO22G01410.1

>NO22G01410.1-protein ID=NO22G01410.1-protein|Name=NO22G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MTPLSCICFNQSDHSLPPAPLHRTSPKSTSSLSSYSAREVSGGIPTRRPR
AHRTRPGDLIIANLFIPFQHFTQPYTMFDKLWDGLCLAEAFGAETMAVTV
WTVFVCLLRALLFSIRVFVWVPNALVFANPFLMERFLQAFRNKASPFSSS
LLSSIKRNSNGYAAACATIADMSSSSSSSSSTVFPSSLTCRTRVVPHLPV
RIAESLLGRTPSILVLLPAHFLGGIMGVTIVKLFLGPSSFTQSYSARALL
PIIYGGSNGDAAPLLLLGWWVFIKEILVTALYVVGLLVLPQVFIINHLPR
QCTYACLLPLLLIRLPDQTPAFAPATLFSLWFTSRDTLRAVHGMTSIQYE
HVFGPILGGFLAGGVMVACFPDDDVPL*
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Synonyms
Publications