NO22G01410.1, NO22G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01410.1
Unique NameNO22G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1208
Alignment locationchr22:417137..418465 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:417137..418465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01410.1 vs.
Match: EWM21491.1 (Major intrinsic protein [Nannochloropsis gaditana])

HSP 1 Score: 318.5 bits (815), Expect = 2.700e-83
Identity = 169/303 (55.78%), Postives = 218/303 (71.95%), Query Frame = 0 
Query:   77 MFDKLWDGLCLAEAFGAETMAVTVWTVFVCLLRALLFSIRVFVWVPNALVFANPFLMERFLQAFRNKASPFSSSLLSSIKRNSNGYAAACATIA--DMSSSSSSSSSTVFPSSLTCRTRVVPHLPVRIAESLLGRTPSILVLLPAHFLGGIMGVTIVKLFLGPSSFTQSYSARALLPIIYGGSNGDAAPLLLLGWWVFIKEILVTALYVVGLLVLPQVFIINHLPRQCTYACLLPLLLIRLPDQTPAFAPATLFSLWFTSRDTLRAVHGMTSIQYEHVFGPILGGFLAGGVMVACFPDDDVPL 378
            M +KLWD L  AE FG ET+ V +WTV VC LR +LF +++  WVPN+L+FANP+ + RF+ AF         S+ S+ +   NG+  A +  A   + +SSS+ SS    SS  CR  VVP++P+RIAESLLGRTPS+LVL+PAH LGGIMGVT+VKL +G S  +   +A+ALLP++YG S   A   +L+GWWVF++EILVT L+V+  LV+P++ ++N LPR+   AC LPLLL+RLPDQTPAF+PA LFS WFTSRD L   +G+ S+QYEHVFGPILGGFLAG VM  CFPDD  PL
Sbjct:    1 MLEKLWDVLQAAEPFGNETLVVMIWTVCVCSLRIILFLLKIQEWVPNSLIFANPYFVNRFVAAF---------SIKSAARNGGNGHCHAASNTAPDGLCTSSSAPSSVSRASSSACR-GVVPNMPIRIAESLLGRTPSVLVLVPAHLLGGIMGVTLVKLTMGWSPLSCGSAAQALLPVMYGTSVDKANASMLMGWWVFVEEILVTFLFVLSFLVVPELLLVNRLPRKYANACALPLLLVRLPDQTPAFSPAALFSFWFTSRDALHKTYGIASVQYEHVFGPILGGFLAGVVMATCFPDDQTPL 293
The following BLAST results are available for this feature:
BLAST of NO22G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21491.12.700e-8355.78Major intrinsic protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01410NO22G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01410.1NO22G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01410.1.cds1NO22G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01410.1.cds2NO22G01410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01410.1 ID=NO22G01410.1|Name=NO22G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp
CTCGCTGATGACGCCCTTGTCTTGTATTTGCTTTAACCAAAGCGATCATT
CACTCCCGCCCGCTCCCCTTCATAGAACGTCTCCCAAGAGCACCTCCTCC
TTGTCTTCGTATAGCGCCAGGGAGGTGAGTGGTGGCATCCCAACGCGCAG
GCCCCGGGCACACAGGACGCGACCTGGAGACCTCATCATCGCCAACTTGT
TCATTCCCTTTCAGCACTTCACCCAGCCATACACTATGTTTGACAAGCTT
TGGGATGGACTGTGCCTTGCGGAAGCCTTTGGGGCCGAGACAATGGCCGT
CACGGTCTGGACCGTGTTTGTATGTCTGTTGCGGGCTTTGCTCTTCTCCA
TCCGAGTCTTTGTGTGGGTCCCAAATGCATTAGTCTTTGCCAACCCCTTC
CTCATGGAGCGCTTTCTGCAGGCTTTCCGAAACAAGGCATCGCCGTTCTC
ATCGTCATTATTGTCGAGTATCAAGAGGAATAGCAACGGCTACGCTGCTG
CATGCGCCACCATTGCCGACATGTCGTCCTCCTCTTCCTCCTCTTCCTCC
ACCGTCTTCCCATCCTCGTTGACCTGCAGGACGCGAGTGGTACCCCACTT
GCCCGTCCGCATCGCCGAGAGCCTGCTAGGACGAACGCCGTCCATTTTAG
TGCTCTTACCAGCGCATTTCCTCGGGGGGATTATGGGTGTCACAATTGTG
AAACTCTTTCTCGGCCCTAGCTCCTTCACCCAGTCTTACTCAGCGCGAGC
ATTGCTCCCTATTATTTATGGCGGCAGCAATGGTGATGCGGCCCCGCTGT
TACTGCTGGGCTGGTGGGTCTTTATCAAGGAGATCCTAGTGACGGCGCTT
TATGTGGTAGGCTTACTGGTTCTACCTCAGGTGTTTATAATTAATCATTT
GCCGAGACAGTGTACATATGCCTGCTTGCTGCCATTACTGCTTATCCGCC
TTCCCGACCAGACGCCAGCATTTGCGCCCGCAACTCTCTTTTCGCTCTGG
TTCACGAGCAGGGATACATTGCGGGCGGTGCATGGCATGACCTCGATTCA
ATATGAACATGTCTTTGGGCCCATCTTGGGGGGGTTTCTGGCAGGCGGCG
TGATGGTGGCATGCTTTCCCGACGATGATGTACCGCTGTAGCTGTGTACT
CAGTCTTGGAGTAAAAACTAATCAAAGAATGTAAATAATGAGCAATTGCA
ACAAGAAG
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protein sequence of NO22G01410.1

>NO22G01410.1-protein ID=NO22G01410.1-protein|Name=NO22G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MTPLSCICFNQSDHSLPPAPLHRTSPKSTSSLSSYSAREVSGGIPTRRPR
AHRTRPGDLIIANLFIPFQHFTQPYTMFDKLWDGLCLAEAFGAETMAVTV
WTVFVCLLRALLFSIRVFVWVPNALVFANPFLMERFLQAFRNKASPFSSS
LLSSIKRNSNGYAAACATIADMSSSSSSSSSTVFPSSLTCRTRVVPHLPV
RIAESLLGRTPSILVLLPAHFLGGIMGVTIVKLFLGPSSFTQSYSARALL
PIIYGGSNGDAAPLLLLGWWVFIKEILVTALYVVGLLVLPQVFIINHLPR
QCTYACLLPLLLIRLPDQTPAFAPATLFSLWFTSRDTLRAVHGMTSIQYE
HVFGPILGGFLAGGVMVACFPDDDVPL*
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mRNA from alignment at chr22:417137..418465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01410.1 ID=NO22G01410.1|Name=NO22G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at chr22:417137..418465- (Nannochloropsis oceanica)
CTCGCTGATGACGCCCTTGTCTTGTATTTGCTTTAACCAAAGCGATCATT
CACTCCCGCCCGCTCCCCTTCATAGAACGTCTCCCAAGAGCACCTCCTCC
TTGTCTTCGTATAGCGCCAGGGAGGTGAGTGGTGGCATCCCAACGCGCAG
GCCCCGGGCACACAGGACGCGACCTGGAGACCTCATCATCGCCAACTTGT
TCATTCCCTTTCAGCACTTCACCCAGCCATACACTATGTTTGACAAGCTT
TGGGATGGACTGTGCCTTGCGGAAGCCTTTGGGGCCGAGACAATGGCCGT
CACGGTCTGGACCGTGTTTGTATGTCTGTTGCGGGCTTTGCTCTTCTCCA
TCCGAGTCTTTGTGTGGGTCCCAAATGCATTAGTCTTTGCCAACCCCTTC
CTCATGGAGCGCTTTCTGCAGGCTTTCCGAAACAAGGCATCGCCGTTCTC
ATCGTCATTATTGTCGAGTATCAAGAGGAATAGCAACGGCTACGCTGCTG
CATGCGCCACCATTGCCGACATGTCGTCCTCCTCTTCCTCCTCTTCCTCC
ACCGTCTTCCCATCCTCGTTGACCTGCAGGACGCGAGTGGTACCCCACTT
GCCCGTCCGCATCGCCGAGAGCCTGCTAGGACGAACGCCGTCCATTTTAG
TGCTCTTACCAGCGCATTTCCTCGGGGGGATTATGGGTGTCACAATTGTG
AAACTCTTTCTCGGCCCTAGCTCCTTCACCCAGTCTTACTCAGCGCGAGC
ATTGCTCCCTATTATTTATGGCGGCAGCAATGGTGATGCGGCCCCGCTGT
TACTGCTGGGCTGGTGGGTCTTTATCAAGGAGATCCTAGTGACGGCGCTT
TATGTGGTAGGCTTACTGGTTCTACCTCAGGTGTTTATAATTAATCATTT
GCCGAGACAGTGTACATATGCCTGCTTGCTGCCATTACTGCTTATCCGCC
TTCCCGACCAGACGCCAGCATTTGCGCCCGCAACTCTCTTTTCGCTCTGG
TTCACGAGCAGGGATACATTGCGGGCGGTGCATGGCATGACCTCGATTCA
ATATGAACATGGTGAGTGCGTGGGGTTGAGAGGGAACGGGTTGTGATGCA
AATGGCAAGATCGGAAATAGACCAGGATCCCTCGAGTCATCACCTTCGCT
CGTTTTTTTATCTCTATTCTTCACATTCACAGTCTTTGGGCCCATCTTGG
GGGGGTTTCTGGCAGGCGGCGTGATGGTGGCATGCTTTCCCGACGATGAT
GTACCGCTGTAGCTGTGTACTCAGTCTTGGAGTAAAAACTAATCAAAGAA
TGTAAATAATGAGCAATTGCAACAAGAAG
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Coding sequence (CDS) from alignment at chr22:417137..418465-

>NO22G01410.1 ID=NO22G01410.1|Name=NO22G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr22:417137..418465- (Nannochloropsis oceanica)
ATGACGCCCTTGTCTTGTATTTGCTTTAACCAAAGCGATCATTCACTCCC
GCCCGCTCCCCTTCATAGAACGTCTCCCAAGAGCACCTCCTCCTTGTCTT
CGTATAGCGCCAGGGAGGTGAGTGGTGGCATCCCAACGCGCAGGCCCCGG
GCACACAGGACGCGACCTGGAGACCTCATCATCGCCAACTTGTTCATTCC
CTTTCAGCACTTCACCCAGCCATACACTATGTTTGACAAGCTTTGGGATG
GACTGTGCCTTGCGGAAGCCTTTGGGGCCGAGACAATGGCCGTCACGGTC
TGGACCGTGTTTGTATGTCTGTTGCGGGCTTTGCTCTTCTCCATCCGAGT
CTTTGTGTGGGTCCCAAATGCATTAGTCTTTGCCAACCCCTTCCTCATGG
AGCGCTTTCTGCAGGCTTTCCGAAACAAGGCATCGCCGTTCTCATCGTCA
TTATTGTCGAGTATCAAGAGGAATAGCAACGGCTACGCTGCTGCATGCGC
CACCATTGCCGACATGTCGTCCTCCTCTTCCTCCTCTTCCTCCACCGTCT
TCCCATCCTCGTTGACCTGCAGGACGCGAGTGGTACCCCACTTGCCCGTC
CGCATCGCCGAGAGCCTGCTAGGACGAACGCCGTCCATTTTAGTGCTCTT
ACCAGCGCATTTCCTCGGGGGGATTATGGGTGTCACAATTGTGAAACTCT
TTCTCGGCCCTAGCTCCTTCACCCAGTCTTACTCAGCGCGAGCATTGCTC
CCTATTATTTATGGCGGCAGCAATGGTGATGCGGCCCCGCTGTTACTGCT
GGGCTGGTGGGTCTTTATCAAGGAGATCCTAGTGACGGCGCTTTATGTGG
TAGGCTTACTGGTTCTACCTCAGGTGTTTATAATTAATCATTTGCCGAGA
CAGTGTACATATGCCTGCTTGCTGCCATTACTGCTTATCCGCCTTCCCGA
CCAGACGCCAGCATTTGCGCCCGCAACTCTCTTTTCGCTCTGGTTCACGA
GCAGGGATACATTGCGGGCGGTGCATGGCATGACCTCGATTCAATATGAA
CATGTCTTTGGGCCCATCTTGGGGGGGTTTCTGGCAGGCGGCGTGATGGT
GGCATGCTTTCCCGACGATGATGTACCGCTGTAG
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Synonyms
Publications