NO22G01380, NO22G01380 (gene) Nannochloropsis oceanica

Overview
NameNO22G01380
Unique NameNO22G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2536
Alignment locationchr22:410422..412957 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:410422..412957 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G01380 vs. NCBI_GenBank
Match: EWM21463.1 (hypothetical protein Naga_100019g57 [Nannochloropsis gaditana])

HSP 1 Score: 271.6 bits (693), Expect = 5.700e-69
Identity = 159/330 (48.18%), Postives = 202/330 (61.21%), Query Frame = 0 
Query:    1 MLAEHLMNRYLGAKGWVRIYDDVYARHSDLFPXXXXXXXXXXXXXXXXXXXXEEDGDSGGKV---DFVEAAKIIVSINMRSTQEPWSPEG-----QLGLTLVLEPMVFKRVHPPFALLQHLSNQH--QQNMDGKKQHQQQQKVEADAPDEEGLCGGVGLFPPGEAVLEMRAVRFLPELTTLGLLASLPSPVLELTPLEKANARHGYDTESPRDEKSMRDFWRLAHSLPLPPHPLDYVRVLVRGHGCASITYPAACLVSHFAHNYSRSTQAYTRLSSTFLHLLTALPGVTKAFTTTSILPSSSSLVPVGKCLTSPQKVSPGALKTARQLRD 321
            +L + L++R+L  +GW RI+DDVY  H+DLFP                    E+     GK+   DFVEA K++V +N R+T  PW         Q+GLT+ LEPMVFKR+ PPF  L+ L+ QH  QQ+  G+    Q Q  +    DE+G+  G  +FPP EAVLEMRAV+ LP+LT  G L SLP+P +E+TPLEK N +HG+D E PRDE ++R FWRL H + LP  PL YVRV+  G G  S  YP  CLVS F HNYSR+TQAY++L  TFL LL   P V +  T      SSSS  PVG+ L+SP+K    A KTARQLRD
Sbjct:  117 LLGQRLLSRFLIDQGWCRIFDDVYTSHTDLFP-------------RYTSNCSEKLDMREGKLARRDFVEAVKVVVLLNTRTT-NPWREHSETANCQIGLTISLEPMVFKRIRPPFDDLKLLATQHHVQQSQRGRLMSSQNQ--QDYVRDEDGVYSGRDVFPPDEAVLEMRAVKVLPDLTKTGFLVSLPTPNIEITPLEKINTQHGFDAEVPRDEVALRRFWRLTHGIELPAEPLTYVRVIFEGQGRTSTIYPTLCLVSQFVHNYSRTTQAYSQLCQTFLRLLRDFPSVLRLSTDF----SSSSGGPVGRRLSSPEKSGLSAFKTARQLRD 426
The following BLAST results are available for this feature:
BLAST of NO22G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21463.15.700e-6948.18hypothetical protein Naga_100019g57 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004123NSK004123Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01380.1NO22G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G01380.2NO22G01380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595759gene_7144Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g57gene8937Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01380.1NO22G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G01380.2NO22G01380.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01380 ID=NO22G01380|Name=NO22G01380|organism=Nannochloropsis oceanica|type=gene|length=2536bp
CCAGTTTCTCCTCCTCCTCCTCCTTCCTCACTATACAGGCCCATTCGTCA
TCACAACAATGCCGCTTTTGCACCTAGAAGTCAAGCTCCCGCCTGTTCTC
ACGCACCTTCAAGAATGTGACGAACTCCAAGTCACCTTCATCTGCCTTCC
AGCCGCAGCCAGCCGAACCGCCGCCTTTCATCTGGTAAGAAACGATCTTG
TATACCTTCTAGTCCTTCGTAGTACTCCTCTTCTTCTCGTCCCTTTCTTG
TTCCTCCCTCCTCCCATTTGCCTCACTTTACTTATAATTTGTGATTTTTT
TCCCTCACCCGTTTCTCGCTTATCCTCCTTCTCCTTCATCGCCTCTTCCC
TCCTCCCTCTCCTCGTCCCCCTCATCATCCCTTCCCTTCACCACACCTCA
ACCCACGCGCGCGCAGGCCAATGCTTTAGAAGAACAAGAACATTCCCGCG
GGGTCCTTGTCCTTCCTCTCCCTGCACACAATGAAAGTGAGCCCTTGAAT
CAAATCCTCTGCTTCGGGGGTTTCCCAGGCGTCTCCGAGGCCGATGTCCG
CTACTGCGCCACAACGTGCGGTTTGACCGTGGCAGCGGTGGAGCTTGGAA
GCGTGAATGCTGTGCATGAGAGACACCTCGTTATGTTGGCCGAACATTTG
ATGAATCGATATTTGGGGGCAAAAGGCTGGGTTAGGATCTACGATGACGT
TTATGCCCGCCACTCTGACCTCTTCCCTCATCCTCATCCTCCTCCTCCTC
CTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGATGGAACGAGGAGGATGGG
GACAGTGGTGGTAAGGTCGACTTCGTAGAAGCAGCCAAAATCATAGTTTC
CATCAACATGCGCTCTACCCAAGAGCCTTGGTCCCCTGAAGGACAACTTG
GCCTCACCCTCGTCCTTGAGCCCATGGTGTTCAAACGCGTCCATCCCCCC
TTCGCCCTCCTTCAGCATCTTTCCAACCAGCACCAGCAAAATATGGACGG
TAAGAAGCAGCATCAGCAACAGCAAAAAGTGGAGGCCGACGCACCCGATG
AGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTCCCCCCGGGTGAGGCCGTG
CTGGAAATGCGCGCTGTCAGGTTCCTGCCTGAGCTGACCACTTTAGGACT
GCTTGCCTCATTGCCCTCGCCCGTCTTGGAGCTGACACCCTTGGAAAAGG
CGAACGCTCGCCACGGCTACGACACTGAGTCCCCGAGGGATGAAAAAAGg
tacggtgcttgatcttcctttggcctgcacgccctaacccgtcccttccc
accactctcctttccccacagCATGCGCGATTTTTGGCGCCTCGCGCACT
CCCTCCCCCTTCCCCCCCACCCTCTCGACTACGTCCGCGTCTTGGTCAGG
GGTCATGGCTGCGCCTCCATCACATACCCAGCCGCCTGTCTCGTCTCTCA
CTTCGCACACAACTATTCCCGCAGCACGCAAGCCTATACCCGTCTGAGCT
CTACCTTCCTTCACCTGCTTACCGCCCTCCCTGGGGTCACCAAAGCCTTC
ACTACCACCTCTATACTTCCCTCCTCCTCCTCTCTTGTGCCCGTCGGTAA
ATGCCTGACCTCCCCCCAAAAAGTAAGCCCCGGCGCCCTCAAAACTGCCA
GGCAGCTGCGGGATGAGGAGCAGGAACGAGGGGGGAGAAAAGAGGGAGGG
ATGGTTATCTTGGTAGGGGGAGGGGCACGGGCAGCTGCTCCGGCAGACGC
GGCAGTCAAAACCACCCTGTGTCCCCCATCCTCTTCCTCCTCTCTTTTTT
CTTCCCCTTCATTCTACGCGGCATCAATCTCGCGCAAGCCGCCCACTGTA
AAGAAACCCAGTCCGGCTCAGAAGAACAAGAAGAAGGGCTTAACCCTTCT
TCCCCCTTCTGTCACTGCTCCCTTGTCATTTCCGACGTCCCACACCAACT
CCTCCTCCTTGGCACGCCAGCAACAAGAAGACGGCGAGGGCAGCAGCAGC
AACAACAACAACAACATTTATGACGACGACAAAGAGCAGGAGGACGATAA
TTTGATTTCGAACCAGTTGACTGGAACGTCGGCCGGCGTGTTTCCCCCTC
CCTCCTCCTCTTTCTCCTCCTCAGCTACCAAAAAGACTCTCCCGCCGCCC
CCTCTTCTACCTCCTGCCATGGACCAGGCGCCGTTCAACAACAGCGACCG
CAACACCGACGAAAAGCCAAAGAAGAAGACTATGAAAGAGAAGATGGTGC
CAGCCCAGACGCTAGATCAGGTCCTTGGAGTAAGCGCTGAATTGACAACG
GGTACATCAATAAAGAAAAAGGCATTGCCCATGACTAAATTGAAGAAAGC
CTTGGATGGTGGAGGGGAGAAAAAAGCGGCTGCCAAGAAAGCCAAGACCA
AGGCCTAGGTGAATTTTGAGTGGCTTCGGAGAAAAGTGTCGGTGGACGGG
ACAGGATAAGAAACAACATAGCTCTTGGGCAGTCCATGCATTGGCTCCAA
GACTATTTGCTCGTTCATTCGCTTTGATTTGGGTTG
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protein sequence of NO22G01380.1

>NO22G01380.1-protein ID=NO22G01380.1-protein|Name=NO22G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bp
MPLLHLEVKLPPVLTHLQECDELQVTFICLPAAASRTAAFHLANALEEQE
HSRGVLVLPLPAHNESEPLNQILCFGGFPGVSEADVRYCATTCGLTVAAV
ELGSVNAVHERHLVMLAEHLMNRYLGAKGWVRIYDDVYARHSDLFPHPHP
PPPPSPAPAPPEPRWNEEDGDSGGKVDFVEAAKIIVSINMRSTQEPWSPE
GQLGLTLVLEPMVFKRVHPPFALLQHLSNQHQQNMDGKKQHQQQQKVEAD
APDEEGLCGGVGLFPPGEAVLEMRAVRFLPELTTLGLLASLPSPVLELTP
LEKANARHGYDTESPRDEKSMRDFWRLAHSLPLPPHPLDYVRVLVRGHGC
ASITYPAACLVSHFAHNYSRSTQAYTRLSSTFLHLLTALPGVTKAFTTTS
ILPSSSSLVPVGKCLTSPQKVSPGALKTARQLRDEEQERGGRKEGGMVIL
VGGGARAAAPADAAVKTTLCPPSSSSSLFSSPSFYAASISRKPPTVKKPS
PAQKNKKKGLTLLPPSVTAPLSFPTSHTNSSSLARQQQEDGEGSSSNNNN
NIYDDDKEQEDDNLISNQLTGTSAGVFPPPSSSFSSSATKKTLPPPPLLP
PAMDQAPFNNSDRNTDEKPKKKTMKEKMVPAQTLDQVLGVSAELTTGTSI
KKKALPMTKLKKALDGGGEKKAAAKKAKTKA*
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protein sequence of NO22G01380.2

>NO22G01380.2-protein ID=NO22G01380.2-protein|Name=NO22G01380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MLAEHLMNRYLGAKGWVRIYDDVYARHSDLFPHPHPPPPPSPAPAPPEPR
WNEEDGDSGGKVDFVEAAKIIVSINMRSTQEPWSPEGQLGLTLVLEPMVF
KRVHPPFALLQHLSNQHQQNMDGKKQHQQQQKVEADAPDEEGLCGGVGLF
PPGEAVLEMRAVRFLPELTTLGLLASLPSPVLELTPLEKANARHGYDTES
PRDEKSMRDFWRLAHSLPLPPHPLDYVRVLVRGHGCASITYPAACLVSHF
AHNYSRSTQAYTRLSSTFLHLLTALPGVTKAFTTTSILPSSSSLVPVGKC
LTSPQKVSPGALKTARQLRDEEQERGGRKEGGMVILVGGGARAAAPADAA
VKTTLCPPSSSSSLFSSPSFYAASISRKPPTVKKPSPAQKNKKKGLTLLP
PSVTAPLSFPTSHTNSSSLARQQQEDGEGSSSNNNNNIYDDDKEQEDDNL
ISNQLTGTSAGVFPPPSSSFSSSATKKTLPPPPLLPPAMDQAPFNNSDRN
TDEKPKKKTMKEKMVPAQTLDQVLGVSAELTTGTSIKKKALPMTKLKKAL
DGGGEKKAAAKKAKTKA*
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Synonyms
Publications