NO22G01380.1, NO22G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01380.1
Unique NameNO22G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2232
Alignment locationchr22:410422..412957 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:410422..412957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO22G01380.1 vs.
Match: EWM21463.1 (hypothetical protein Naga_100019g57 [Nannochloropsis gaditana])

HSP 1 Score: 353.2 bits (905), Expect = 1.800e-93
Identity = 281/720 (39.03%), Postives = 386/720 (53.61%), Query Frame = 0
Query:    1 MPLLHLEVKLPPVLTHLQECDELQVTFICLP-AAASRTAAFHLANALEEQEHSRGVLVLPLPAHNESE-PLNQILCFGGFPGVSEADVRYCATTCGLTVAAVELGSVNAVHERHLVMLAEHLMNRYLGAKGWVRIYDDVYARHSDLFPHPHPPPPPSPAPAPPEPRWNEEDGDSGGKVDFVEAAKIIVSINMRSTQEPWSPEG-----QLGLTLVLEPMVFKRVHPPFALLQHLSNQH--QQNMDGKKQHQQQQKVEADAPDEEGLCGGVGLFPPGEAVLEMRAVRFLPELTTLGLLASLPSPVLELTPLEKANARHGYDTESPRDEKSMRDFWRLAHSLPLPPHPLDYVRVLVRGHGCASITYPAACLVSHFAHNYSRSTQAYTRLSSTFLHLLTALPGVTKAFTTTSILPSSSSLVPVGKCLTSPQKVSPGALKTARQLRDEEQERGGRKEGG----MVILVGGGARAAAPADAAVKTTLCPPSSSSSLFSSPSFYAASISRKPPTVKKPSPAQK-----NKKKGLTLLPPSVTAPLSFPTSHTNSSS-----LARQQQEDG---EGSSSNNNNNIYDDDKEQEDDNLISNQLTGTSA--GVFPPPSSSFSSSATKKTLPPPPLLPPAMDQAPFNNSDRNTDEKPKKKT--MKEKMVPAQTLDQVLGVSAELT-TG---------TSIKKKALPMTKLKKALDGGGEKKAAAKKAKTK 681
            MPL+ +E+KLPP LT L E   L VTFI L    AS TAAFHLA ALEE+E SRG+LVLPLP  N++E P+ ++LCFGG   +    +R  AT CGLT+ A+  GS+  ++E +L++L + L++R+L  +GW RI+DDVY  H+DLFP            +    + +  +G    + DFVEA K++V +N R+T  PW         Q+GLT+ LEPMVFKR+ PPF  L+ L+ QH  QQ+  G+    Q Q  +    DE+G+  G  +FPP EAVLEMRAV+ LP+LT  G L SLP+P +E+TPLEK N +HG+D E PRDE ++R FWRL H + LP  PL YVRV+  G G  S  YP  CLVS F HNYSR+TQAY++L  TFL LL   P V +  T      SSSS  PVG+ L+SP+K    A KTARQLRD  +E  GR   G    +   V    +A+        +++ P  SSSS  SSP    A  S+   + K+ + A +      +      + P  T   S  T+  +SS      L      DG   E  ++   +++  D    E        LT +S+  GV     S  +S+ T  T  P  ++ P+  Q P ++S  +  ++ KK       K   A+ L +   +S+ L  TG          SIK K+     LKK  +      A   K + K
Sbjct:    1 MPLVDVEMKLPPSLTELDEDGSLSVTFISLDKTVASDTAAFHLATALEERERSRGLLVLPLPTTNDAERPVFELLCFGGLSKLPNGIIRNVATECGLTLEAITRGSLTVLNENYLLLLGQRLLSRFLIDQGWCRIFDDVYTSHTDLFPR---------YTSNCSEKLDMREGKLARR-DFVEAVKVVVLLNTRTTN-PWREHSETANCQIGLTISLEPMVFKRIRPPFDDLKLLATQHHVQQSQRGRLMSSQNQ--QDYVRDEDGVYSGRDVFPPDEAVLEMRAVKVLPDLTKTGFLVSLPTPNIEITPLEKINTQHGFDAEVPRDEVALRRFWRLTHGIELPAEPLTYVRVIFEGQGRTSTIYPTLCLVSQFVHNYSRTTQAYSQLCQTFLRLLRDFPSVLRLSTDF----SSSSGGPVGRRLSSPEKSGLSAFKTARQLRDSIKE--GRPHVGDNARLQKYVALATQASKKPSTNPFSSVLPSFSSSSNPSSPLLPHAIGSQSICSSKRTAKAARALSDPPETMNSVKVSPPPTLKFSSRTADVHSSESSAAFLTSSSSPDGVSFESGAAFLTSSLSLDGVSSESSAAF---LTSSSSPDGVDCEHVSDATSTCTSATSAPSKMI-PSRHQPPRSDSKTDWVDEAKKSNGFQVSKTTHAEPLLERKAISSSLAMTGKKKGHTVREISIKTKSRGYESLKKQKEQANRNNAQNHKTRAK 697          
The following BLAST results are available for this feature:
BLAST of NO22G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21463.11.800e-9339.03hypothetical protein Naga_100019g57 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01380NO22G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01380.1NO22G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01380.1.cds1NO22G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01380.1.cds2NO22G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01380.1.cds3NO22G01380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01380.1 ID=NO22G01380.1|Name=NO22G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp
CCAGTTTCTCCTCCTCCTCCTCCTTCCTCACTATACAGGCCCATTCGTCA
TCACAACAATGCCGCTTTTGCACCTAGAAGTCAAGCTCCCGCCTGTTCTC
ACGCACCTTCAAGAATGTGACGAACTCCAAGTCACCTTCATCTGCCTTCC
AGCCGCAGCCAGCCGAACCGCCGCCTTTCATCTGGCCAATGCTTTAGAAG
AACAAGAACATTCCCGCGGGGTCCTTGTCCTTCCTCTCCCTGCACACAAT
GAAAGTGAGCCCTTGAATCAAATCCTCTGCTTCGGGGGTTTCCCAGGCGT
CTCCGAGGCCGATGTCCGCTACTGCGCCACAACGTGCGGTTTGACCGTGG
CAGCGGTGGAGCTTGGAAGCGTGAATGCTGTGCATGAGAGACACCTCGTT
ATGTTGGCCGAACATTTGATGAATCGATATTTGGGGGCAAAAGGCTGGGT
TAGGATCTACGATGACGTTTATGCCCGCCACTCTGACCTCTTCCCTCATC
CTCATCCTCCTCCTCCTCCTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGA
TGGAACGAGGAGGATGGGGACAGTGGTGGTAAGGTCGACTTCGTAGAAGC
AGCCAAAATCATAGTTTCCATCAACATGCGCTCTACCCAAGAGCCTTGGT
CCCCTGAAGGACAACTTGGCCTCACCCTCGTCCTTGAGCCCATGGTGTTC
AAACGCGTCCATCCCCCCTTCGCCCTCCTTCAGCATCTTTCCAACCAGCA
CCAGCAAAATATGGACGGTAAGAAGCAGCATCAGCAACAGCAAAAAGTGG
AGGCCGACGCACCCGATGAGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTC
CCCCCGGGTGAGGCCGTGCTGGAAATGCGCGCTGTCAGGTTCCTGCCTGA
GCTGACCACTTTAGGACTGCTTGCCTCATTGCCCTCGCCCGTCTTGGAGC
TGACACCCTTGGAAAAGGCGAACGCTCGCCACGGCTACGACACTGAGTCC
CCGAGGGATGAAAAAAGCATGCGCGATTTTTGGCGCCTCGCGCACTCCCT
CCCCCTTCCCCCCCACCCTCTCGACTACGTCCGCGTCTTGGTCAGGGGTC
ATGGCTGCGCCTCCATCACATACCCAGCCGCCTGTCTCGTCTCTCACTTC
GCACACAACTATTCCCGCAGCACGCAAGCCTATACCCGTCTGAGCTCTAC
CTTCCTTCACCTGCTTACCGCCCTCCCTGGGGTCACCAAAGCCTTCACTA
CCACCTCTATACTTCCCTCCTCCTCCTCTCTTGTGCCCGTCGGTAAATGC
CTGACCTCCCCCCAAAAAGTAAGCCCCGGCGCCCTCAAAACTGCCAGGCA
GCTGCGGGATGAGGAGCAGGAACGAGGGGGGAGAAAAGAGGGAGGGATGG
TTATCTTGGTAGGGGGAGGGGCACGGGCAGCTGCTCCGGCAGACGCGGCA
GTCAAAACCACCCTGTGTCCCCCATCCTCTTCCTCCTCTCTTTTTTCTTC
CCCTTCATTCTACGCGGCATCAATCTCGCGCAAGCCGCCCACTGTAAAGA
AACCCAGTCCGGCTCAGAAGAACAAGAAGAAGGGCTTAACCCTTCTTCCC
CCTTCTGTCACTGCTCCCTTGTCATTTCCGACGTCCCACACCAACTCCTC
CTCCTTGGCACGCCAGCAACAAGAAGACGGCGAGGGCAGCAGCAGCAACA
ACAACAACAACATTTATGACGACGACAAAGAGCAGGAGGACGATAATTTG
ATTTCGAACCAGTTGACTGGAACGTCGGCCGGCGTGTTTCCCCCTCCCTC
CTCCTCTTTCTCCTCCTCAGCTACCAAAAAGACTCTCCCGCCGCCCCCTC
TTCTACCTCCTGCCATGGACCAGGCGCCGTTCAACAACAGCGACCGCAAC
ACCGACGAAAAGCCAAAGAAGAAGACTATGAAAGAGAAGATGGTGCCAGC
CCAGACGCTAGATCAGGTCCTTGGAGTAAGCGCTGAATTGACAACGGGTA
CATCAATAAAGAAAAAGGCATTGCCCATGACTAAATTGAAGAAAGCCTTG
GATGGTGGAGGGGAGAAAAAAGCGGCTGCCAAGAAAGCCAAGACCAAGGC
CTAGGTGAATTTTGAGTGGCTTCGGAGAAAAGTGTCGGTGGACGGGACAG
GATAAGAAACAACATAGCTCTTGGGCAGTCCATGCATTGGCTCCAAGACT
ATTTGCTCGTTCATTCGCTTTGATTTGGGTTG
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protein sequence of NO22G01380.1

>NO22G01380.1-protein ID=NO22G01380.1-protein|Name=NO22G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bp
MPLLHLEVKLPPVLTHLQECDELQVTFICLPAAASRTAAFHLANALEEQE
HSRGVLVLPLPAHNESEPLNQILCFGGFPGVSEADVRYCATTCGLTVAAV
ELGSVNAVHERHLVMLAEHLMNRYLGAKGWVRIYDDVYARHSDLFPHPHP
PPPPSPAPAPPEPRWNEEDGDSGGKVDFVEAAKIIVSINMRSTQEPWSPE
GQLGLTLVLEPMVFKRVHPPFALLQHLSNQHQQNMDGKKQHQQQQKVEAD
APDEEGLCGGVGLFPPGEAVLEMRAVRFLPELTTLGLLASLPSPVLELTP
LEKANARHGYDTESPRDEKSMRDFWRLAHSLPLPPHPLDYVRVLVRGHGC
ASITYPAACLVSHFAHNYSRSTQAYTRLSSTFLHLLTALPGVTKAFTTTS
ILPSSSSLVPVGKCLTSPQKVSPGALKTARQLRDEEQERGGRKEGGMVIL
VGGGARAAAPADAAVKTTLCPPSSSSSLFSSPSFYAASISRKPPTVKKPS
PAQKNKKKGLTLLPPSVTAPLSFPTSHTNSSSLARQQQEDGEGSSSNNNN
NIYDDDKEQEDDNLISNQLTGTSAGVFPPPSSSFSSSATKKTLPPPPLLP
PAMDQAPFNNSDRNTDEKPKKKTMKEKMVPAQTLDQVLGVSAELTTGTSI
KKKALPMTKLKKALDGGGEKKAAAKKAKTKA*
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mRNA from alignment at chr22:410422..412957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01380.1 ID=NO22G01380.1|Name=NO22G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2536bp|location=Sequence derived from alignment at chr22:410422..412957+ (Nannochloropsis oceanica)
CCAGTTTCTCCTCCTCCTCCTCCTTCCTCACTATACAGGCCCATTCGTCA TCACAACAATGCCGCTTTTGCACCTAGAAGTCAAGCTCCCGCCTGTTCTC ACGCACCTTCAAGAATGTGACGAACTCCAAGTCACCTTCATCTGCCTTCC AGCCGCAGCCAGCCGAACCGCCGCCTTTCATCTGGTAAGAAACGATCTTG TATACCTTCTAGTCCTTCGTAGTACTCCTCTTCTTCTCGTCCCTTTCTTG TTCCTCCCTCCTCCCATTTGCCTCACTTTACTTATAATTTGTGATTTTTT TCCCTCACCCGTTTCTCGCTTATCCTCCTTCTCCTTCATCGCCTCTTCCC TCCTCCCTCTCCTCGTCCCCCTCATCATCCCTTCCCTTCACCACACCTCA ACCCACGCGCGCGCAGGCCAATGCTTTAGAAGAACAAGAACATTCCCGCG GGGTCCTTGTCCTTCCTCTCCCTGCACACAATGAAAGTGAGCCCTTGAAT CAAATCCTCTGCTTCGGGGGTTTCCCAGGCGTCTCCGAGGCCGATGTCCG CTACTGCGCCACAACGTGCGGTTTGACCGTGGCAGCGGTGGAGCTTGGAA GCGTGAATGCTGTGCATGAGAGACACCTCGTTATGTTGGCCGAACATTTG ATGAATCGATATTTGGGGGCAAAAGGCTGGGTTAGGATCTACGATGACGT TTATGCCCGCCACTCTGACCTCTTCCCTCATCCTCATCCTCCTCCTCCTC CTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGATGGAACGAGGAGGATGGG GACAGTGGTGGTAAGGTCGACTTCGTAGAAGCAGCCAAAATCATAGTTTC CATCAACATGCGCTCTACCCAAGAGCCTTGGTCCCCTGAAGGACAACTTG GCCTCACCCTCGTCCTTGAGCCCATGGTGTTCAAACGCGTCCATCCCCCC TTCGCCCTCCTTCAGCATCTTTCCAACCAGCACCAGCAAAATATGGACGG TAAGAAGCAGCATCAGCAACAGCAAAAAGTGGAGGCCGACGCACCCGATG AGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTCCCCCCGGGTGAGGCCGTG CTGGAAATGCGCGCTGTCAGGTTCCTGCCTGAGCTGACCACTTTAGGACT GCTTGCCTCATTGCCCTCGCCCGTCTTGGAGCTGACACCCTTGGAAAAGG CGAACGCTCGCCACGGCTACGACACTGAGTCCCCGAGGGATGAAAAAAGG TACGGTGCTTGATCTTCCTTTGGCCTGCACGCCCTAACCCGTCCCTTCCC ACCACTCTCCTTTCCCCACAGCATGCGCGATTTTTGGCGCCTCGCGCACT CCCTCCCCCTTCCCCCCCACCCTCTCGACTACGTCCGCGTCTTGGTCAGG GGTCATGGCTGCGCCTCCATCACATACCCAGCCGCCTGTCTCGTCTCTCA CTTCGCACACAACTATTCCCGCAGCACGCAAGCCTATACCCGTCTGAGCT CTACCTTCCTTCACCTGCTTACCGCCCTCCCTGGGGTCACCAAAGCCTTC ACTACCACCTCTATACTTCCCTCCTCCTCCTCTCTTGTGCCCGTCGGTAA ATGCCTGACCTCCCCCCAAAAAGTAAGCCCCGGCGCCCTCAAAACTGCCA GGCAGCTGCGGGATGAGGAGCAGGAACGAGGGGGGAGAAAAGAGGGAGGG ATGGTTATCTTGGTAGGGGGAGGGGCACGGGCAGCTGCTCCGGCAGACGC GGCAGTCAAAACCACCCTGTGTCCCCCATCCTCTTCCTCCTCTCTTTTTT CTTCCCCTTCATTCTACGCGGCATCAATCTCGCGCAAGCCGCCCACTGTA AAGAAACCCAGTCCGGCTCAGAAGAACAAGAAGAAGGGCTTAACCCTTCT TCCCCCTTCTGTCACTGCTCCCTTGTCATTTCCGACGTCCCACACCAACT CCTCCTCCTTGGCACGCCAGCAACAAGAAGACGGCGAGGGCAGCAGCAGC AACAACAACAACAACATTTATGACGACGACAAAGAGCAGGAGGACGATAA TTTGATTTCGAACCAGTTGACTGGAACGTCGGCCGGCGTGTTTCCCCCTC CCTCCTCCTCTTTCTCCTCCTCAGCTACCAAAAAGACTCTCCCGCCGCCC CCTCTTCTACCTCCTGCCATGGACCAGGCGCCGTTCAACAACAGCGACCG CAACACCGACGAAAAGCCAAAGAAGAAGACTATGAAAGAGAAGATGGTGC CAGCCCAGACGCTAGATCAGGTCCTTGGAGTAAGCGCTGAATTGACAACG GGTACATCAATAAAGAAAAAGGCATTGCCCATGACTAAATTGAAGAAAGC CTTGGATGGTGGAGGGGAGAAAAAAGCGGCTGCCAAGAAAGCCAAGACCA AGGCCTAGGTGAATTTTGAGTGGCTTCGGAGAAAAGTGTCGGTGGACGGG ACAGGATAAGAAACAACATAGCTCTTGGGCAGTCCATGCATTGGCTCCAA GACTATTTGCTCGTTCATTCGCTTTGATTTGGGTTG
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Coding sequence (CDS) from alignment at chr22:410422..412957+

>NO22G01380.1 ID=NO22G01380.1|Name=NO22G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=2046bp|location=Sequence derived from alignment at chr22:410422..412957+ (Nannochloropsis oceanica)
ATGCCGCTTTTGCACCTAGAAGTCAAGCTCCCGCCTGTTCTCACGCACCT
TCAAGAATGTGACGAACTCCAAGTCACCTTCATCTGCCTTCCAGCCGCAG
CCAGCCGAACCGCCGCCTTTCATCTGGCCAATGCTTTAGAAGAACAAGAA
CATTCCCGCGGGGTCCTTGTCCTTCCTCTCCCTGCACACAATGAAAGTGA
GCCCTTGAATCAAATCCTCTGCTTCGGGGGTTTCCCAGGCGTCTCCGAGG
CCGATGTCCGCTACTGCGCCACAACGTGCGGTTTGACCGTGGCAGCGGTG
GAGCTTGGAAGCGTGAATGCTGTGCATGAGAGACACCTCGTTATGTTGGC
CGAACATTTGATGAATCGATATTTGGGGGCAAAAGGCTGGGTTAGGATCT
ACGATGACGTTTATGCCCGCCACTCTGACCTCTTCCCTCATCCTCATCCT
CCTCCTCCTCCTTCTCCTGCTCCGGCTCCTCCCGAGCCGCGATGGAACGA
GGAGGATGGGGACAGTGGTGGTAAGGTCGACTTCGTAGAAGCAGCCAAAA
TCATAGTTTCCATCAACATGCGCTCTACCCAAGAGCCTTGGTCCCCTGAA
GGACAACTTGGCCTCACCCTCGTCCTTGAGCCCATGGTGTTCAAACGCGT
CCATCCCCCCTTCGCCCTCCTTCAGCATCTTTCCAACCAGCACCAGCAAA
ATATGGACGGTAAGAAGCAGCATCAGCAACAGCAAAAAGTGGAGGCCGAC
GCACCCGATGAGGAAGGGTTGTGTGGAGGGGTTGGCCTCTTCCCCCCGGG
TGAGGCCGTGCTGGAAATGCGCGCTGTCAGGTTCCTGCCTGAGCTGACCA
CTTTAGGACTGCTTGCCTCATTGCCCTCGCCCGTCTTGGAGCTGACACCC
TTGGAAAAGGCGAACGCTCGCCACGGCTACGACACTGAGTCCCCGAGGGA
TGAAAAAAGCATGCGCGATTTTTGGCGCCTCGCGCACTCCCTCCCCCTTC
CCCCCCACCCTCTCGACTACGTCCGCGTCTTGGTCAGGGGTCATGGCTGC
GCCTCCATCACATACCCAGCCGCCTGTCTCGTCTCTCACTTCGCACACAA
CTATTCCCGCAGCACGCAAGCCTATACCCGTCTGAGCTCTACCTTCCTTC
ACCTGCTTACCGCCCTCCCTGGGGTCACCAAAGCCTTCACTACCACCTCT
ATACTTCCCTCCTCCTCCTCTCTTGTGCCCGTCGGTAAATGCCTGACCTC
CCCCCAAAAAGTAAGCCCCGGCGCCCTCAAAACTGCCAGGCAGCTGCGGG
ATGAGGAGCAGGAACGAGGGGGGAGAAAAGAGGGAGGGATGGTTATCTTG
GTAGGGGGAGGGGCACGGGCAGCTGCTCCGGCAGACGCGGCAGTCAAAAC
CACCCTGTGTCCCCCATCCTCTTCCTCCTCTCTTTTTTCTTCCCCTTCAT
TCTACGCGGCATCAATCTCGCGCAAGCCGCCCACTGTAAAGAAACCCAGT
CCGGCTCAGAAGAACAAGAAGAAGGGCTTAACCCTTCTTCCCCCTTCTGT
CACTGCTCCCTTGTCATTTCCGACGTCCCACACCAACTCCTCCTCCTTGG
CACGCCAGCAACAAGAAGACGGCGAGGGCAGCAGCAGCAACAACAACAAC
AACATTTATGACGACGACAAAGAGCAGGAGGACGATAATTTGATTTCGAA
CCAGTTGACTGGAACGTCGGCCGGCGTGTTTCCCCCTCCCTCCTCCTCTT
TCTCCTCCTCAGCTACCAAAAAGACTCTCCCGCCGCCCCCTCTTCTACCT
CCTGCCATGGACCAGGCGCCGTTCAACAACAGCGACCGCAACACCGACGA
AAAGCCAAAGAAGAAGACTATGAAAGAGAAGATGGTGCCAGCCCAGACGC
TAGATCAGGTCCTTGGAGTAAGCGCTGAATTGACAACGGGTACATCAATA
AAGAAAAAGGCATTGCCCATGACTAAATTGAAGAAAGCCTTGGATGGTGG
AGGGGAGAAAAAAGCGGCTGCCAAGAAAGCCAAGACCAAGGCCTAG
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Synonyms
Publications