NO22G01300, NO22G01300 (gene) Nannochloropsis oceanica

Overview
NameNO22G01300
Unique NameNO22G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1472
Alignment locationchr22:391649..393120 -

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Properties
Property NameValue
DescriptionNudix hydrolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:391649..393120 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Homology
BLAST of NO22G01300 vs. NCBI_GenBank
Match: XP_005856275.1 (nudix hydrolase, partial [Nannochloropsis gaditana CCMP526] >EKU20091.1 nudix hydrolase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 170.6 bits (431), Expect = 6.200e-39
Identity = 84/113 (74.34%), Postives = 96/113 (84.96%), Query Frame = 0
Query:   35 TPLVTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGETVVQTAMREAMEEIGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAE 148
            T  VTL KAAVL+PLFE+ EDG+IHCLLTVRP HMR+HAGEVCFPGGK++ GE VV  A+REA EE+GLAP+ VRV+G MTPTLSLHL EVTPVVA+IP DFV QPNPE + E
Sbjct:   45 TSPVTLCKAAVLIPLFENREDGKIHCLLTVRPSHMRAHAGEVCFPGGKLDDGEDVVSAALREAWEEVGLAPKVVRVLGTMTPTLSLHLYEVTPVVAVIPPDFVAQPNPEVMKE 157          
BLAST of NO22G01300 vs. NCBI_GenBank
Match: EWM21440.1 (nudix hydrolase [Nannochloropsis gaditana] >EWM21441.1 nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 170.6 bits (431), Expect = 6.200e-39
Identity = 98/171 (57.31%), Postives = 116/171 (67.84%), Query Frame = 0
Query:    1 MDALVDIFLKAC-----PQSLQ--QPSPDHQPSTITTLPNL-----------------TPLVTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGETVVQTAMREAMEEIGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAE 148
            MDAL++ F+ A       QS Q  Q  P    S++TT  +                  T  VTL KAAVL+PLFE+ EDG+IHCLLTVRP HMR+HAGEVCFPGGK++ GE VV  A+REA EE+GLAP+ VRV+G MTPTLSLHL EVTPVVA+IP DFV QPNPE + E
Sbjct:    1 MDALIEAFVCASQKVGHAQSQQNVQCCPQASASSLTTPSSFGGSFVRNDAMAYNRSRATSPVTLCKAAVLIPLFENREDGKIHCLLTVRPSHMRAHAGEVCFPGGKLDDGEDVVSAALREAWEEVGLAPKVVRVLGTMTPTLSLHLYEVTPVVAVIPPDFVAQPNPEVMKE 171          
BLAST of NO22G01300 vs. NCBI_GenBank
Match: PRW59038.1 (nudix hydrolase mitochondrial-like [Chlorella sorokiniana])

HSP 1 Score: 148.7 bits (374), Expect = 2.500e-32
Identity = 83/191 (43.46%), Postives = 114/191 (59.69%), Query Frame = 0
Query:   36 PLVTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGET-VVQTAMREAMEEIGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFSCPLDLFLSPSPGQHSFQDLTW--FTDWRMHTFRH---GEQWNVWGLTAETLVRLALLCF---------PDHSFPY 212
            P V+ + AAVL+PLFE    G +H +L  R   +++H+GEVCFPGGK E G+   + TA+REA EE+GL P  V+V+  + P LS HLL VTPV+ +IP     +PNP+EV  VF+ PL  FL   PG +S +D+ W     +R+H F H   G  + +WGLTA  L+ +A   F         P +S PY
Sbjct:  324 PPVSSKFAAVLVPLFEDPASGEVHVVLNQRSSKLKTHSGEVCFPGGKREPGDADDISTALREAQEELGLDPSCVQVIACLPPFLSKHLLSVTPVIGLIPPHQAFRPNPQEVESVFTAPLHRFLQAGPG-YSHRDVEWQPGMPYRLHYFEHESQGRSYTIWGLTAGMLIVIAEKAFGRPPEFLPNPPNSLPY 513          
BLAST of NO22G01300 vs. NCBI_GenBank
Match: KDD77070.1 (hypothetical protein H632_c27p3 [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 144.8 bits (364), Expect = 3.600e-31
Identity = 88/222 (39.64%), Postives = 126/222 (56.76%), Query Frame = 0
Query:    1 MDALVDIFLKACPQSLQQPSPDHQPSTITTLPNLTPLVTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGE-TVVQTAMREAMEEIGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFSCPLDLFLSPSPGQHSFQDLTWFT--DWRMHTFRH---GEQWNVWGLTAETLVRLALLCFP-DHSFPYDTRH 216
            +DA +D  + A   S   P    +   +  L   T  V+ R+AAVL+PLFE    G++H +LT R   + +H+GEVC PGG+ +  +     TA+REA EE+G++P +VRV+G + P LS H L V PV+A IP D    PNP EV  VF+ PL +F+ P  G H  +D  W     +R+H F+H   G ++ +WGLTA  L+  A + F  D +FP    H
Sbjct:    9 LDAAIDNLVAATAASRSDPV---RRELVRVLSICT--VSDRQAAVLIPLFEDPSTGQVHVVLTRRSTGLATHSGEVCLPGGRRDPEDFDDAATAVREAEEELGISPASVRVLGCLPPLLSKHRLSVRPVLAAIPPDLPFVPNPAEVESVFAAPLSMFVEPPVGCHRHKDHAWEEGFPFRVHFFKHAHRGSEYVIWGLTAGILIEAAQIAFARDAAFPVSVPH 225          
BLAST of NO22G01300 vs. NCBI_GenBank
Match: GAX76882.1 (hypothetical protein CEUSTIGMA_g4328.t1 [Chlamydomonas eustigma])

HSP 1 Score: 141.4 bits (355), Expect = 4.000e-30
Identity = 85/177 (48.02%), Postives = 112/177 (63.28%), Query Frame = 0
Query:   26 STITTLPNLTPLVTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGETVVQ-TAMREAMEEIGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFSCPLDLFLSPSPGQHSFQDLTW-FTDWRMHTFRHGEQWNVWGLTAETLVRLA 201
            S   +L +    V+ + AAVL+ LFE   DG+ H  LT R + + +H GEVC PGGK +  +   + TA REA EEIGL P  V V+G++ P LS  LL VTPVVA IPA F P PNP EVA VFS PL+LFL P  G HS   +TW    +R+H+F++ + + +WGLTA  L+ +A
Sbjct:   23 SNFRSLKSTESRVSNKPAAVLVALFEG-PDGKPHVWLTQRSKDLPTHPGEVCLPGGKRDLLDPSDEFTAKREAHEEIGLDPAMVTVLGQLPPLLSECLLSVTPVVATIPATFTPSPNPGEVAMVFSAPLNLFLEPPAGTHSTHLITWQDKPYRLHSFQY-KGFQIWGLTATILIEVA 197          
BLAST of NO22G01300 vs. NCBI_GenBank
Match: EPZ36845.1 (NUDIX hydrolase-like domain-containing protein [Rozella allomycis CSF55])

HSP 1 Score: 141.0 bits (354), Expect = 5.200e-30
Identity = 83/198 (41.92%), Postives = 127/198 (64.14%), Query Frame = 0
Query:   24 QPSTITTLPNLTPLVTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGET-VVQTAMREAMEEIGL-APEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFSCPLDLFLSPSPGQHSFQDLTWF-TDWRMHTFRHGEQWNVWGLTAETLVRLALLCFPDHSFPYDTRHPDG 219
            Q  +I  +PN     ++ +AAVL+PLF H +D  ++ LLTVR   ++SHAGEVC PGGK +  ++  ++TA+REA EEIGL A +  +V+G + PTLS   + V PVVAII  DFVP+ NP+EV   FS PL +F+S     +++ D+ W    +R+H F   + + VWG+TA+ L+ LA + +   + P++  +P+G
Sbjct:   12 QRESINDIPN-----SVTRAAVLIPLFVHEDD--LYVLLTVRSSKLKSHAGEVCLPGGKKDPSDSDDIETALREANEEIGLEARDVSKVLGLINPTLSKAYIYVQPVVAIIKDDFVPKNNPKEVDGAFSVPLSMFISTK--DYNYYDIDWAGYQFRLHEFM-ADNYRVWGMTAQILIHLAQIVYDCKTLPFEL-YPEG 198          
BLAST of NO22G01300 vs. NCBI_GenBank
Match: XP_011399026.1 (Nudix hydrolase 15, mitochondrial [Auxenochlorella protothecoides] >KFM26130.1 Nudix hydrolase 15, mitochondrial [Auxenochlorella protothecoides])

HSP 1 Score: 140.6 bits (353), Expect = 6.800e-30
Identity = 85/170 (50.00%), Postives = 108/170 (63.53%), Query Frame = 0
Query:   38 VTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGET-VVQTAMREAMEEIGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFSCPLDLFLSPSPGQHSFQDLTWF--TDWRMHTFRH----GEQWNVWGLTAETLVRLA 201
            V+ R AAVL+PLFE     R H +LT R   +RSH GEVCFPGGK E G+   V TA+REA EE+GL P +VRV+G + P LS HLL VTPV+A IPA     PNP+EV  VF+ PL  FL  S   HS ++ T+     +R+H F +     E ++VWGLTA  L+ +A
Sbjct:   35 VSARHAAVLVPLFEDPATRRTHVVLTQRAAGLRSHGGEVCFPGGKREEGDADDVATAVREAQEELGLDPNSVRVLGCLGPVLSKHLLSVTPVLATIPARHAFHPNPDEVQAVFAPPLHTFLEAS-DLHSSREATFAPGMPYRLHFFDYQAADREWYSVWGLTAAMLIDIA 203          
BLAST of NO22G01300 vs. NCBI_GenBank
Match: XP_017330639.1 (PREDICTED: peroxisomal coenzyme A diphosphatase NUDT7 [Ictalurus punctatus])

HSP 1 Score: 132.9 bits (333), Expect = 1.400e-27
Identity = 76/192 (39.58%), Postives = 119/192 (61.98%), Query Frame = 0
Query:   37 LVTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGE-TVVQTAMREAMEEIGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFSCPLDLFLSPSP-GQHSFQDLTWFTDWRMHTFRHGEQ-WNVWGLTAETLVRLALLCF---PDHSFPYDTRHPDGNLME 223
            L +++KA+VL+PLF  + +GR+H LLTVR   ++ + GEVCFPGGK +  +   ++TA+REA+EEI L P+ V VV ++ P L+   + VTPVVA I   F   PNP+EV+EVFS P++ FL  +    +   ++  +T   ++T    ++   +WGLTA  L+ LA+L F   P+    +D ++P  N  +
Sbjct:   23 LSSVKKASVLIPLF--LREGRVHVLLTVRSTELKHNPGEVCFPGGKSDPHDRDEIETALREALEEISLPPDGVEVVCRLCPVLNARGILVTPVVAFISDSFQASPNPDEVSEVFSVPVEFFLKETDHSAYPVPNIAGYTHSFIYTDPVTDKIQQIWGLTAYLLILLAVLTFKKNPEFEVDFDFQNPLANFQQ 212          
BLAST of NO22G01300 vs. NCBI_GenBank
Match: PSC67946.1 (Nudix hydrolase mitochondrial [Micractinium conductrix])

HSP 1 Score: 132.9 bits (333), Expect = 1.400e-27
Identity = 78/175 (44.57%), Postives = 105/175 (60.00%), Query Frame = 0
Query:   36 PLVTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVE-AGETVVQTAMREAMEEIGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFSCPLDLFLSPSPGQHSFQDLTW--FTDWRMHTFRHGEQ---WNVWGLTAETLVRLALLCF 205
            P V+ R AAVL+PLFE  + G +H +L  R   +++H+GEVCFPGGK +      + TA+REA EE+G+ P AV VV  + P LS HLL VTPVV  IP  +   PNP EV  VF+ PL  FL    G +S +D+ W     +R+H F +  Q   + +WGLTA  L+ +A   F
Sbjct:  182 PPVSNRFAAVLVPLFEDPDSGEVHVVLNQRSSKLKTHSGEVCFPGGKRDPLDRDDIATALREAQEELGIEPSAVDVVACLPPFLSKHLLSVTPVVGCIPPHYAFIPNPTEVEAVFTAPLRRFLEAGDG-YSSRDVEWQPGLPYRLHYFDYVHQDHSYCIWGLTAGMLIAIAEKAF 355          
BLAST of NO22G01300 vs. NCBI_GenBank
Match: XP_017545675.1 (PREDICTED: peroxisomal coenzyme A diphosphatase NUDT7 [Pygocentrus nattereri])

HSP 1 Score: 132.5 bits (332), Expect = 1.900e-27
Identity = 86/224 (38.39%), Postives = 117/224 (52.23%), Query Frame = 0
Query:   22 DHQPSTITTLPNLT------PLVTLRKAAVLLPLFEHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGE-TVVQTAMREAMEEIGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFSCPLDLFLS-------PSPGQHSFQDLTWFTDWRMHTFRHGEQWNVWGLTAETLVRLALLCF---PDHSFPYDTRHPDGNLMETWYERV 229
            DH+   I  L   T      PL  L KA+VL+PLF  + +G++  L+TVR   ++ +AGEVCFPGGK +  +   + TA+REA EEIGL P+ V VV ++ P L+   L VTPVV  I   F  +PNP EV++VFS PL+ FL        P P          FTD       H     +WGLTA   + LA+L F   P++   +D  +P  N       R+
Sbjct:    2 DHKKKVIERLSKCTAGEESLPLPALTKASVLIPLF--VREGKLQVLMTVRSTELKHNAGEVCFPGGKSDRNDRDEIDTALREAEEEIGLPPDEVEVVCRLIPVLNQRGLLVTPVVGFISESFHARPNPAEVSDVFSVPLEFFLKNTQHSAYPVPNVGGMTHSFIFTDPLTDKIHH-----IWGLTASLTILLAVLVFERKPEYEVGFDVDNPMVNFRRELQHRL 218          
The following BLAST results are available for this feature:
BLAST of NO22G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856275.16.200e-3974.34nudix hydrolase, partial [Nannochloropsis gaditana... [more]
EWM21440.16.200e-3957.31nudix hydrolase [Nannochloropsis gaditana] >EWM214... [more]
PRW59038.12.500e-3243.46nudix hydrolase mitochondrial-like [Chlorella soro... [more]
KDD77070.13.600e-3139.64hypothetical protein H632_c27p3 [Helicosporidium s... [more]
GAX76882.14.000e-3048.02hypothetical protein CEUSTIGMA_g4328.t1 [Chlamydom... [more]
EPZ36845.15.200e-3041.92NUDIX hydrolase-like domain-containing protein [Ro... [more]
XP_011399026.16.800e-3050.00Nudix hydrolase 15, mitochondrial [Auxenochlorella... [more]
XP_017330639.11.400e-2739.58PREDICTED: peroxisomal coenzyme A diphosphatase NU... [more]
PSC67946.11.400e-2744.57Nudix hydrolase mitochondrial [Micractinium conduc... [more]
XP_017545675.11.900e-2738.39PREDICTED: peroxisomal coenzyme A diphosphatase NU... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR076ngnoR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01300.1NO22G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595725gene_7133Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g47gene8947Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01300.1NO22G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01300 ID=NO22G01300|Name=NO22G01300|organism=Nannochloropsis oceanica|type=gene|length=1472bp
CAGGTGCCACTCCAACGGGTTTCTTTTATGGATGCCTTGGTCGATATCTT
CCTCAAAGCTTGCCCGCAGTCACTGCAACAGCCTTCACCAGACCACCAGC
CGTCCACCATCACGACCCTCCCAAACCTCACTCCTCTCGTCACACTCCGC
AAGGCCGCTGTGCTGCTTCCCTTGTTCGAGCACATCGAGGATGGCCGAAT
CCATTGCTTGCTGACAGTCCGGCCTGAGCACATGCGCTCGCATGCAGGCG
AAGTATGCTTCCCCGGAGGCAAAGTCGAAGCAGGGGAAACTGTGGTCCAA
ACTGCCATGAGAGAAGCTATGGAGGAAATTGGCTTGGCGCCCGAGGCTGT
CCGAGTAGTGGGCAAGATGACACCAACCCTTTCTCTCCACCTTCTTGAAG
TCACGCCTGTTGTTGCCATCATCCCGGCTGATTTCGTGCCCCAACCCAAC
CCTGAGgtatgtaggtttcgtgtcgccagaatgcccagtgatgtacaagg
ccgcactcgcgtgattgtaccacctcatttctttgacttaggctaaactt
cgacatctgcattctcttagGAAGTGGCCGAGGTATTTTCGTGCCCGCTC
GACCTCTTTCTGTCACCGTCACCGGGCCAGCACTCGTTTCAAGACTTGAC
GTGGTTTACAGATTGGCGAATGCACACGTTCCGACATGGCGAACAGTGGA
ATGTGTGGGGTTTGACGGCCGAGACCCTAGTCCGGCTGGCTCTTCTGTGC
TTCCCAGACCACTCCTTTCCGTACGATACGCGTCATCCTGATGGAAATCT
CATGGAGACCTGGTACGAGAGGGTTTTGGCAATGCCCGAATTTCACCGGG
AGGCTAGAGCGGCTGCAGCAGGCTGTAGGGAAAAGGCCAACAGCCGCCGA
AAAAAGTAAGAACTGCGCTGTGATCATTAGGCGAAGAGAAGGCGAGAGAC
GACGGAACTGAAAATTGTGCAGACTGTTACATACATAATATAAGCTGTCG
AGGTAATGGAAAGAATGAAGAAAAAATGTAAATCAAAGTGGCAAAAGTGA
GTGAAAACGCTACCACAGCGGTGTTTGACGTGGACGGGAAAGGAAAGGGA
AATTATGAGAGAGGTAGATTGCGAGGGAAGCTCTGAAATTCCCTTGGAAT
TTCTAGGCTGGAGATGTTTGTGTCAAGCCAGTGCGCCTTATATTCAGGTG
GTTGACGCGGAACCTTAGGAAGAGCGACTTTGCACTTGCTGCAACACTTC
CACCATTCCCATCCCCTAAAACTCTTTGCTTAAACTCGGACAAGGAATAA
GGGGTGAATAGGCAACTATATTTGGACGGCTCCCCCTCGTATGCAAGTCC
TCGAGGACGCAGGTTGCATGCGATAGTTCAACAGGATTGTAGGAACGGCA
GAAAAAAAGAACCAATGGAGTCGTGCCCCAAAAATAAAAATAAAAATCTT
TGATCTTGCTAGCACCTTCAGA
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protein sequence of NO22G01300.1

>NO22G01300.1-protein ID=NO22G01300.1-protein|Name=NO22G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MDALVDIFLKACPQSLQQPSPDHQPSTITTLPNLTPLVTLRKAAVLLPLF
EHIEDGRIHCLLTVRPEHMRSHAGEVCFPGGKVEAGETVVQTAMREAMEE
IGLAPEAVRVVGKMTPTLSLHLLEVTPVVAIIPADFVPQPNPEEVAEVFS
CPLDLFLSPSPGQHSFQDLTWFTDWRMHTFRHGEQWNVWGLTAETLVRLA
LLCFPDHSFPYDTRHPDGNLMETWYERVLAMPEFHREARAAAAGCREKAN
SRRKK*
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Synonyms
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