NO22G01290, NO22G01290 (gene) Nannochloropsis oceanica

Overview
NameNO22G01290
Unique NameNO22G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length964
Alignment locationchr22:390601..391564 -

Link to JBrowse

Properties
Property NameValue
DescriptionMD-2-related lipid-recognition protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:390601..391564 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR003172ML_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO22G01290 vs. NCBI_GenBank
Match: EWM21469.1 (MD-2-related lipid-recognition protein [Nannochloropsis gaditana])

HSP 1 Score: 177.6 bits (449), Expect = 4.000e-41
Identity = 92/143 (64.34%), Postives = 110/143 (76.92%), Query Frame = 0 
Query:    6 TSSSINRSIP-VATQGHAEATAVIDIHNVIGDLPVRAGKEFVVTVHATPNAVLDGGVIYMVVKALGVSVSSHSFNICKDIGLECPVVPQQKITAVFHFPVPWYAITMKADVVITATDKLGQSLACVLAPQVPVVRKGYEDPVL 148
            +S ++  SIP      H E+ A I IH V GDLPVRAG+ FVV V+ATP+AVLDGG I MVVKA+GV+VSS +F IC+DI L CPV P+Q + A+F FPVPWYAITM+ADVVITATD  G  LACV APQ+PVVRKG+ +PVL
Sbjct:   65 SSGALVTSIPHQPCNNHVESKAAITIHTVRGDLPVRAGQIFVVEVYATPSAVLDGGKITMVVKAMGVTVSSRAFGICEDIDLTCPVAPEQSVRALFRFPVPWYAITMRADVVITATDTEGSPLACVEAPQIPVVRKGHIEPVL 207
The following BLAST results are available for this feature:
BLAST of NO22G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21469.14.000e-4164.34MD-2-related lipid-recognition protein [Nannochlor... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR076ngnoR076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004134NSK004134Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01290.1NO22G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595720gene_7132Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g48gene8946Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01290.1NO22G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01290 ID=NO22G01290|Name=NO22G01290|organism=Nannochloropsis oceanica|type=gene|length=964bp
ATGCCACTCACCACCACATCATCGTCGATTAACAGGTCTATCCCTGTTGC
CACACAAGgtacgtgatgctctccgccgggaaggagggttcgcgattgcc
aggacggtttcatttccccctcttcttcagcagcctcccagtccttatgg
tcgtcctcctcgttttcagtctctccgctcctcgcaccgctgccgtggtc
gtgtccattccacaccatcattgcatagGTCATGCGGAGGCTACGGCGGT
GATTGATATCCATAATGTGATCGgtaagtctcagaaagacggtgcttgag
gtggcattcgggattgccacttcgctaactgctcctcattttctaatatt
cttgagtattttgtctggattgtgaattgagtgtgtgtatatttgcaaga
cgtatttgtggagctctcccacataccagcccaccaaccgcacgcaacac
agGGGACCTTCCCGTGCGAGCAGGCAAGGAATTTGTTGTCACAGTGCATG
CGACGCCTAATGCGGTTCTGGATGGTGGAGTAATTTATATGGTGGTCAAG
GCCCTGGGTGTCTCAGTTTCCTCTCATTCGTTCAACATTTGCAAGGACAT
AGGTCTAGAGTGCCCTGTCGTGCCCCAACAAAAAATTACTGCTGTTTTCC
ACTTCCCAGTGCCCTGGTACGCGATCACAATGAAGGCCGACGTTGTGATT
ACTGCCACGGACAAACTTGGCCAGTCCCTTGCGTGTGTGTTGGCACCGCA
AGTTCCAGTTGTACGAAAGGGCTATGAGGATCCCGTCTTACCGGAGGTGG
TGGCTGGAGAGTTGAGTCCGACACAAGAGGGAGAAAGGCAGATAGACGGC
AGGGGCACGGATTTGGGTGATGATTATGACGTGTATGCTGGAAGAAGCTG
TGGGGACGGTGGTGGGAAGTTTGTGAGTGCGAGTAAGGGTTTATGGGCTC
TTGTTTGTGAGTGA
back to top

protein sequence of NO22G01290.1

>NO22G01290.1-protein ID=NO22G01290.1-protein|Name=NO22G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MPLTTTSSSINRSIPVATQGHAEATAVIDIHNVIGDLPVRAGKEFVVTVH
ATPNAVLDGGVIYMVVKALGVSVSSHSFNICKDIGLECPVVPQQKITAVF
HFPVPWYAITMKADVVITATDKLGQSLACVLAPQVPVVRKGYEDPVLPEV
VAGELSPTQEGERQIDGRGTDLGDDYDVYAGRSCGDGGGKFVSASKGLWA
LVCE*
back to top
Synonyms
Publications