NO22G01290.1, NO22G01290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01290.1
Unique NameNO22G01290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length615
Alignment locationchr22:390601..391564 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:390601..391564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01290.1 vs.
Match: EWM21469.1 (MD-2-related lipid-recognition protein [Nannochloropsis gaditana])

HSP 1 Score: 177.6 bits (449), Expect = 4.000e-41
Identity = 92/143 (64.34%), Postives = 110/143 (76.92%), Query Frame = 0 
Query:    6 TSSSINRSIP-VATQGHAEATAVIDIHNVIGDLPVRAGKEFVVTVHATPNAVLDGGVIYMVVKALGVSVSSHSFNICKDIGLECPVVPQQKITAVFHFPVPWYAITMKADVVITATDKLGQSLACVLAPQVPVVRKGYEDPVL 148
            +S ++  SIP      H E+ A I IH V GDLPVRAG+ FVV V+ATP+AVLDGG I MVVKA+GV+VSS +F IC+DI L CPV P+Q + A+F FPVPWYAITM+ADVVITATD  G  LACV APQ+PVVRKG+ +PVL
Sbjct:   65 SSGALVTSIPHQPCNNHVESKAAITIHTVRGDLPVRAGQIFVVEVYATPSAVLDGGKITMVVKAMGVTVSSRAFGICEDIDLTCPVAPEQSVRALFRFPVPWYAITMRADVVITATDTEGSPLACVEAPQIPVVRKGHIEPVL 207
The following BLAST results are available for this feature:
BLAST of NO22G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21469.14.000e-4164.34MD-2-related lipid-recognition protein [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01290NO22G01290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01290.1NO22G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01290.1.cds1NO22G01290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01290.1.cds2NO22G01290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01290.1.cds3NO22G01290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01290.1 ID=NO22G01290.1|Name=NO22G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=615bp
ATGCCACTCACCACCACATCATCGTCGATTAACAGGTCTATCCCTGTTGC
CACACAAGGTCATGCGGAGGCTACGGCGGTGATTGATATCCATAATGTGA
TCGGGGACCTTCCCGTGCGAGCAGGCAAGGAATTTGTTGTCACAGTGCAT
GCGACGCCTAATGCGGTTCTGGATGGTGGAGTAATTTATATGGTGGTCAA
GGCCCTGGGTGTCTCAGTTTCCTCTCATTCGTTCAACATTTGCAAGGACA
TAGGTCTAGAGTGCCCTGTCGTGCCCCAACAAAAAATTACTGCTGTTTTC
CACTTCCCAGTGCCCTGGTACGCGATCACAATGAAGGCCGACGTTGTGAT
TACTGCCACGGACAAACTTGGCCAGTCCCTTGCGTGTGTGTTGGCACCGC
AAGTTCCAGTTGTACGAAAGGGCTATGAGGATCCCGTCTTACCGGAGGTG
GTGGCTGGAGAGTTGAGTCCGACACAAGAGGGAGAAAGGCAGATAGACGG
CAGGGGCACGGATTTGGGTGATGATTATGACGTGTATGCTGGAAGAAGCT
GTGGGGACGGTGGTGGGAAGTTTGTGAGTGCGAGTAAGGGTTTATGGGCT
CTTGTTTGTGAGTGA
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protein sequence of NO22G01290.1

>NO22G01290.1-protein ID=NO22G01290.1-protein|Name=NO22G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MPLTTTSSSINRSIPVATQGHAEATAVIDIHNVIGDLPVRAGKEFVVTVH
ATPNAVLDGGVIYMVVKALGVSVSSHSFNICKDIGLECPVVPQQKITAVF
HFPVPWYAITMKADVVITATDKLGQSLACVLAPQVPVVRKGYEDPVLPEV
VAGELSPTQEGERQIDGRGTDLGDDYDVYAGRSCGDGGGKFVSASKGLWA
LVCE*
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mRNA from alignment at chr22:390601..391564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01290.1 ID=NO22G01290.1|Name=NO22G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=964bp|location=Sequence derived from alignment at chr22:390601..391564- (Nannochloropsis oceanica)
ATGCCACTCACCACCACATCATCGTCGATTAACAGGTCTATCCCTGTTGC
CACACAAGGTACGTGATGCTCTCCGCCGGGAAGGAGGGTTCGCGATTGCC
AGGACGGTTTCATTTCCCCCTCTTCTTCAGCAGCCTCCCAGTCCTTATGG
TCGTCCTCCTCGTTTTCAGTCTCTCCGCTCCTCGCACCGCTGCCGTGGTC
GTGTCCATTCCACACCATCATTGCATAGGTCATGCGGAGGCTACGGCGGT
GATTGATATCCATAATGTGATCGGTAAGTCTCAGAAAGACGGTGCTTGAG
GTGGCATTCGGGATTGCCACTTCGCTAACTGCTCCTCATTTTCTAATATT
CTTGAGTATTTTGTCTGGATTGTGAATTGAGTGTGTGTATATTTGCAAGA
CGTATTTGTGGAGCTCTCCCACATACCAGCCCACCAACCGCACGCAACAC
AGGGGACCTTCCCGTGCGAGCAGGCAAGGAATTTGTTGTCACAGTGCATG
CGACGCCTAATGCGGTTCTGGATGGTGGAGTAATTTATATGGTGGTCAAG
GCCCTGGGTGTCTCAGTTTCCTCTCATTCGTTCAACATTTGCAAGGACAT
AGGTCTAGAGTGCCCTGTCGTGCCCCAACAAAAAATTACTGCTGTTTTCC
ACTTCCCAGTGCCCTGGTACGCGATCACAATGAAGGCCGACGTTGTGATT
ACTGCCACGGACAAACTTGGCCAGTCCCTTGCGTGTGTGTTGGCACCGCA
AGTTCCAGTTGTACGAAAGGGCTATGAGGATCCCGTCTTACCGGAGGTGG
TGGCTGGAGAGTTGAGTCCGACACAAGAGGGAGAAAGGCAGATAGACGGC
AGGGGCACGGATTTGGGTGATGATTATGACGTGTATGCTGGAAGAAGCTG
TGGGGACGGTGGTGGGAAGTTTGTGAGTGCGAGTAAGGGTTTATGGGCTC
TTGTTTGTGAGTGA
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Coding sequence (CDS) from alignment at chr22:390601..391564-

>NO22G01290.1 ID=NO22G01290.1|Name=NO22G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at chr22:390601..391564- (Nannochloropsis oceanica)
ATGCCACTCACCACCACATCATCGTCGATTAACAGGTCTATCCCTGTTGC
CACACAAGGTCATGCGGAGGCTACGGCGGTGATTGATATCCATAATGTGA
TCGGGGACCTTCCCGTGCGAGCAGGCAAGGAATTTGTTGTCACAGTGCAT
GCGACGCCTAATGCGGTTCTGGATGGTGGAGTAATTTATATGGTGGTCAA
GGCCCTGGGTGTCTCAGTTTCCTCTCATTCGTTCAACATTTGCAAGGACA
TAGGTCTAGAGTGCCCTGTCGTGCCCCAACAAAAAATTACTGCTGTTTTC
CACTTCCCAGTGCCCTGGTACGCGATCACAATGAAGGCCGACGTTGTGAT
TACTGCCACGGACAAACTTGGCCAGTCCCTTGCGTGTGTGTTGGCACCGC
AAGTTCCAGTTGTACGAAAGGGCTATGAGGATCCCGTCTTACCGGAGGTG
GTGGCTGGAGAGTTGAGTCCGACACAAGAGGGAGAAAGGCAGATAGACGG
CAGGGGCACGGATTTGGGTGATGATTATGACGTGTATGCTGGAAGAAGCT
GTGGGGACGGTGGTGGGAAGTTTGTGAGTGCGAGTAAGGGTTTATGGGCT
CTTGTTTGTGAGTGA
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Synonyms
Publications