NO22G01230, NO22G01230 (gene) Nannochloropsis oceanica

Overview
NameNO22G01230
Unique NameNO22G01230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1511
Alignment locationchr22:361806..363316 -

Link to JBrowse

Properties
Property NameValue
DescriptionFarnesyl diphosphate synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:361806..363316 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR008949Isoprenoid_synthase_dom
IPR000092Polyprenyl_synt
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO22G01230 vs. NCBI_GenBank
Match: EWM21458.1 (farnesyl pyrophosphate synthase [Nannochloropsis gaditana])

HSP 1 Score: 665.6 bits (1716), Expect = 9.900e-188
Identity = 329/395 (83.29%), Postives = 356/395 (90.13%), Query Frame = 0
Query:   18 MSASSMAVGLAAGILLAVAVLYPKTGAPKADAGKAKHDSDLSYPATLPTNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRSK 413
            MS  SMA+GLAAG LL+ A+LYP+  + K    K + D+DLSYP++LP +EKEAF EICDQLT E+L+EL+  Y++P EA EWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKG  LSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQIL+RHFGHE FY  LFDLFREVTLQTELGQLLDLTSQPMDGQIDL RFT QRYQLIVKYKTAFYTFYLPIACGLILSGMG P AL  ARRVCVLMGEYFQVQDD LDC+GDPK+IGKVGTDIQDNKCSWLVVQAL KATPAQR +LE HYGKHE++SVAAVK LYR+MGLE+LFK+YEEQSY AIQ ELDALP +IPRPVFE+LLKKIY+RSK
Sbjct:    1 MSGKSMAIGLAAGFLLSAALLYPRVRS-KTRTSKTEPDTDLSYPSSLPPDEKEAFIEICDQLTVELLTELKSRYELPAEASEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGRVLSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILKRHFGHEPFYVTLFDLFREVTLQTELGQLLDLTSQPMDGQIDLQRFTPQRYQLIVKYKTAFYTFYLPIACGLILSGMGHPAALTTARRVCVLMGEYFQVQDDYLDCYGDPKLIGKVGTDIQDNKCSWLVVQALAKATPAQRTVLEAHYGKHEDSSVAAVKTLYREMGLEVLFKQYEEQSYTAIQKELDALPADIPRPVFELLLKKIYRRSK 394          
BLAST of NO22G01230 vs. NCBI_GenBank
Match: OQR93384.1 (farnesyl pyrophosphate synthetase [Achlya hypogyna])

HSP 1 Score: 423.3 bits (1087), Expect = 8.500e-115
Identity = 200/349 (57.31%), Postives = 264/349 (75.64%), Query Frame = 0
Query:   63 TLPTNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRS 412
            T    E + F +IC +L EE+L+ ++  Y MP+EAI+WV +MI+YN  GGKLNRG++V+     +   KG     R+  +AA+LGWCIEWLQAFFLVADDVMDDS+TRRGQPCW+R+P+VK IA+ND+F+LES V+QIL+ HF  E++Y  L + F+EV  QTELGQLLDLTSQP+DG  +L RFT++R+Q IV +KTA+YTFYL  A  + LSG+ +P   + A+ +CV +GEYFQVQDD LDC+ DPKV+GK+GTDIQDNKCSWLVVQAL +ATP QR +++ HYGK+ EAS+A +KALY  + LE +++KYE  SY  +  +L A   N+P  VF +LL KIYKR+
Sbjct:    4 TSKQQEIDDFIKICYELKEEVLATMKNKYTMPQEAIDWVNEMIDYNCIGGKLNRGISVIHCAEALTEGKGLTPEARK--KAAILGWCIEWLQAFFLVADDVMDDSITRRGQPCWYRIPKVKQIAINDAFLLESFVYQILKTHFRGESYYLDLVETFQEVIFQTELGQLLDLTSQPLDGPTNLDRFTIERHQKIVVFKTAYYTFYLSAASAMFLSGVKDPACYSLAQEICVKIGEYFQVQDDYLDCYADPKVLGKIGTDIQDNKCSWLVVQALARATPEQRAVIKEHYGKNNEASIATIKALYVTLDLEAVYRKYENDSYDEL-CKLIAAVSNMPATVFHMLLNKIYKRT 349          
BLAST of NO22G01230 vs. NCBI_GenBank
Match: XP_008617319.1 (hypothetical protein SDRG_13014 [Saprolegnia diclina VS20] >EQC29141.1 hypothetical protein SDRG_13014 [Saprolegnia diclina VS20])

HSP 1 Score: 420.2 bits (1079), Expect = 7.200e-114
Identity = 198/349 (56.73%), Postives = 264/349 (75.64%), Query Frame = 0
Query:   63 TLPTNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRS 412
            T    E + F +IC +L EE+L+ ++  Y MP+EAI+WV +MI+YN  GGKLNRG++V+     +   KG     R+  +AA+LGWCIEWLQAFFLVADDVMDDS+TRRGQPCW+R+P+VK IA+ND+F+LES V+QIL+ HF  E++Y  L + F+EV  QTELGQLLDLTSQP+DG  +L RFT++R+Q IV +KTA+YTFYL  A  + LSG+ +P     A+ +CV +GEYFQVQDD LDC+ DP+V+GK+GTDIQDNKCSWLVVQAL +ATP QR +++ HYGK+ EAS+A +KALY  + LE +++KYE +SY  +   + A+  N+P  VF +LL KIYKR+
Sbjct:    4 TSKQQEIDEFIKICYELKEEVLTTMKTKYTMPQEAIDWVNEMIDYNCIGGKLNRGISVIHCAEALTQGKGLTPEARK--KAAILGWCIEWLQAFFLVADDVMDDSITRRGQPCWYRIPKVKQIAINDAFLLESFVYQILKTHFRGESYYLDLVETFQEVIFQTELGQLLDLTSQPLDGPTNLDRFTIERHQKIVVFKTAYYTFYLSAASAMFLSGVSDPACYTLAQEICVKIGEYFQVQDDYLDCYADPEVLGKIGTDIQDNKCSWLVVQALARATPEQRAVIKEHYGKNNEASIAVIKALYVSLDLEGVYRKYENESYDELCKLIGAVN-NMPATVFHMLLSKIYKRT 349          
BLAST of NO22G01230 vs. NCBI_GenBank
Match: XP_012206593.1 (hypothetical protein SPRG_10991 [Saprolegnia parasitica CBS 223.65] >KDO22676.1 hypothetical protein SPRG_10991 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 419.9 bits (1078), Expect = 9.400e-114
Identity = 198/349 (56.73%), Postives = 264/349 (75.64%), Query Frame = 0
Query:   63 TLPTNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRS 412
            T    E + F +IC +L EE+L+ ++  Y MP+EAI+WV +MI+YN  GGKLNRG++V+     +   KG     R+  +AA+LGWCIEWLQAFFLVADDVMDDS+TRRGQPCW+R+P+VK IA+ND+F+LES V+QIL+ HF  E++Y  L + F+EV  QTELGQLLDLTSQP+DG  +L RFT++R+Q IV +KTA+YTFYL  A  + LSG+ +P     A+ +CV +GEYFQVQDD LDC+ DP+V+GK+GTDIQDNKCSWLVVQAL +ATP QR +++ HYGK+ EAS+A +KALY  + LE +++KYE +SY  +   + A+  N+P  VF +LL KIYKR+
Sbjct:    4 TSKQQEIDEFIKICYELKEEVLTTMKTKYTMPQEAIDWVNEMIDYNCIGGKLNRGISVIHCAEALTQGKGLTPEARK--KAAILGWCIEWLQAFFLVADDVMDDSITRRGQPCWYRIPKVKQIAINDAFLLESFVYQILKTHFRGESYYLDLVETFQEVIFQTELGQLLDLTSQPLDGPTNLDRFTIERHQKIVVFKTAYYTFYLSAASAMFLSGVSDPACYTLAQEICVKIGEYFQVQDDYLDCYADPEVLGKIGTDIQDNKCSWLVVQALARATPEQRAVIKEHYGKNNEASIAVIKALYVTLDLEGVYRKYENESYDELCKLIGAVN-NMPATVFHMLLSKIYKRT 349          
BLAST of NO22G01230 vs. NCBI_GenBank
Match: GAX17802.1 (farnesyl diphosphate synthase [Fistulifera solaris])

HSP 1 Score: 416.8 bits (1070), Expect = 8.000e-113
Identity = 201/346 (58.09%), Postives = 260/346 (75.14%), Query Frame = 0
Query:   67 NEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRSK 413
            ++K+ F  +  QL EE+       ++M  EA++W++ M++YNV GGKLNRG TV++V R +   +G  +S  E+A+AAVLGW IE+LQAFFLVADD+MDDS TRRGQPCW++   V L+A+NDSF+LES VF IL+RHFG+E +YT L +L  + T QTELGQLLDLTSQP   ++DL+RFT+QRY+LIVKYKTAFY+FYLP+A G+IL+G  +  +  AA+ + + MGEYFQVQDD LDCFGDP VIGKVGTDIQDNKCSWLVVQAL++    Q+ +L  +YG  ++  V  VK LYR + L  +F +YEE SY  IQ  LDA  +++PR VFE LL KIYKRSK
Sbjct:   87 SDKDKFLCLYPQLQEELCEWFATEHEMTPEAVQWIRDMLDYNVPGGKLNRGTTVLAVYRALQ--QGKPISEHEYAQAAVLGWTIEFLQAFFLVADDIMDDSQTRRGQPCWYKNKHVNLVAINDSFLLESAVFCILKRHFGNEPYYTELLELLLQTTQQTELGQLLDLTSQPQGNEVDLNRFTMQRYKLIVKYKTAFYSFYLPVALGMILAGNTDEASYQAAKEILLTMGEYFQVQDDYLDCFGDPSVIGKVGTDIQDNKCSWLVVQALERCNEEQKNVLRQNYGAWDDQKVETVKELYRTLDLPNIFAQYEEDSYQRIQKALDA--IDLPRDVFETLLNKIYKRSK 428          
BLAST of NO22G01230 vs. NCBI_GenBank
Match: AKH49589.1 (farnesyl pyrophosphate synthase [Rhizosolenia setigera])

HSP 1 Score: 415.2 bits (1066), Expect = 2.300e-112
Identity = 202/348 (58.05%), Postives = 262/348 (75.29%), Query Frame = 0
Query:   66 TNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQ-IDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRSK 413
            T +KE F  +   L + I       ++M  E + W+ +MI+Y+  GGK+NRG+TV++V RT+  + G  L+ RE ARA+V+GW IE+LQAFFLVADD+MDDS TRRGQPCW+ LP+V  IAVNDSF+LES VF  L+ HFG E +Y  L +LF E   QTE GQLLDLTSQP D +  DL RFT++RY+ IVKYKTAFY+FYLP+A  +++SG+    +   AR +C +MGEYFQ+QDDVLDC+G P+VIGKVGTDIQDNKCSWL+VQALD+ATP QRK++E +YGK ++A VA +KA+Y +MGL+ +F+KYEE SYA IQ EL  +  +IP+ VF + L KIYKRSK
Sbjct:   88 TTDKEKFLSVYPCLRDSIAEYFATKHEMVPEGVNWITEMIDYSCVGGKMNRGITVLTVARTLSGSSG--LTPREEARASVVGWGIEFLQAFFLVADDLMDDSKTRRGQPCWYLLPKVGTIAVNDSFLLESFVFTFLKEHFGKEPYYIKLVELFLETIQQTECGQLLDLTSQPKDAKTADLSRFTIERYRKIVKYKTAFYSFYLPVASAMLMSGVTNSKSFKTARNICCIMGEYFQIQDDVLDCYGTPEVIGKVGTDIQDNKCSWLIVQALDRATPEQRKVIEENYGKWDDAKVAKIKAIYNEMGLKSVFEKYEEDSYAEIQEELKKIN-DIPQEVFTLFLDKIYKRSK 432          
BLAST of NO22G01230 vs. NCBI_GenBank
Match: XP_002184024.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44693.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 414.1 bits (1063), Expect = 5.200e-112
Identity = 208/323 (64.40%), Postives = 252/323 (78.02%), Query Frame = 0
Query:   96 EAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNA-LSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQP-----MDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRSK 413
            EAI+++++M++YNV GGKLNRG TV+ V R +    G A L+  E ARAAVLGW IE+LQAFFLVADDVMDDS TRRGQPCW++LP V+L+A+NDSF+LES VF ILRRHFGHE FY  L +L  +VT +TELGQLLDLTSQP         +DL RFTL RYQ IVKYKTAFY+FYLP+A G+ILSG+ +  ALA AR +C LMGEYFQ+QDD LDCFGDP VIGKVGTDIQDNKCSWLVVQAL + TPAQR +L+ HYG+ ++  V  VK+LYR++ L  +F  YEE SYA IQA+L+ +   +P+ VF + L KIYKRSK
Sbjct:   25 EAIDYLRRMMDYNVPGGKLNRGTTVIDVYRVL---LGKATLTPTETARAAVLGWAIEFLQAFFLVADDVMDDSQTRRGQPCWYKLPDVQLVAINDSFLLESFVFAILRRHFGHEPFYLHLLELMLDVTHKTELGQLLDLTSQPPQHHDQPHHVDLDRFTLTRYQQIVKYKTAFYSFYLPVAMGMILSGVTDAPALAQARTICCLMGEYFQIQDDYLDCFGDPAVIGKVGTDIQDNKCSWLVVQALARCTPAQRDVLQNHYGQSDDQKVETVKSLYRELQLVEVFHAYEEDSYAQIQAQLEQVHA-VPKQVFVLFLNKIYKRSK 343          
BLAST of NO22G01230 vs. NCBI_GenBank
Match: CBN75787.1 (Farnesyl pyrophosphate synthase [Ectocarpus siliculosus])

HSP 1 Score: 412.5 bits (1059), Expect = 1.500e-111
Identity = 199/364 (54.67%), Postives = 267/364 (73.35%), Query Frame = 0
Query:   50 GKAKHDSDL-SYPATLPTNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRSK 413
            G A  DS L  YP  LP + K++F  +   L EE+++++   Y+     ++W+++ +EYN KGGK+NRG+ VV V R    A G  L   E  R ++LGWC+EWLQAFFLVADDVMD S+TRRGQPCW+++P+V+ IA+NDSFILE++VF++L+RHF HE +Y  L +LF +VT +TE+GQLLDLTSQPMD   DL RFT  RY++IV+YKTA+YTFYLP A G+I +G+ +P +   AR +C  +GE+FQ+QDD LDCFGDP+VIGKVGTDIQDNKCSWLVVQAL++A+ AQ+ +L  +Y   EEA +  VK LYR++ LE ++ KYEE ++  I+ EL A   +IP  VF   + KIYKRSK
Sbjct:  137 GLAVEDSALVVYPRELPGDPKKSFEAMHKFLVEELVADVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEANGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPSDLTRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKVGTDIQDNKCSWLVVQALERASKAQKAVLIQNYAIDEEAKIERVKELYRELKLEKVYAKYEEDTHKQIK-ELIAKVEDIPHAVFHQFIDKIYKRSK 499          
BLAST of NO22G01230 vs. NCBI_GenBank
Match: OQS04034.1 (farnesyl pyrophosphate synthetase [Thraustotheca clavata])

HSP 1 Score: 412.1 bits (1058), Expect = 2.000e-111
Identity = 194/345 (56.23%), Postives = 260/345 (75.36%), Query Frame = 0
Query:   66 TNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKR 411
            + E   F ++C +L EEIL+ ++  Y MP+EA++WV +M++YN  GGKLNRG++V+      +A     L+     +AA+LGWCIEWLQAFFLVADDVMD+S+TRRGQPCW+R+P+VK IA+ND+F+LES V+QIL+ HF  E++Y  L + F+EV  QTELGQLLDLTSQP+DG  +L RFT++R+Q IV +KTA+YTFYL  A  + LSG+ +P +   A+ +CV +GEYFQVQDD LDC+ DPKV+GK+GTDIQDNKCSWLVVQAL +ATP QR +++ HYGK+ EAS+A +K LY  + LE +++KYE  SY  +  +L A   N+P  VF +LL KIYKR
Sbjct:  847 SKENVEFIKVCYELKEEILATMKNKYSMPEEALQWVNEMVDYNCIGGKLNRGISVI---HCAEALAQGPLTPEARKKAAILGWCIEWLQAFFLVADDVMDESITRRGQPCWYRIPKVKQIAINDAFLLESFVYQILKTHFRSESYYLDLVETFQEVIWQTELGQLLDLTSQPLDGPTNLDRFTIERHQKIVVFKTAYYTFYLSAASAMFLSGVKDPASYKLAQEICVKIGEYFQVQDDYLDCYADPKVLGKIGTDIQDNKCSWLVVQALSRATPEQRAVIKEHYGKNNEASIAIIKKLYVTLDLESVYRKYENDSYDEL-CKLIADVKNMPATVFHMLLSKIYKR 1187          
BLAST of NO22G01230 vs. NCBI_GenBank
Match: GAX20074.1 (farnesyl diphosphate synthase [Fistulifera solaris])

HSP 1 Score: 411.8 bits (1057), Expect = 2.600e-111
Identity = 209/391 (53.45%), Postives = 273/391 (69.82%), Query Frame = 0
Query:   26 GLAAGILLAVAVLYPKTGAPKADA-GKAKHDSDLSYP---ATLPTNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRSK 413
            GL   +L  V      T  P +      K     +YP       +++K+ F  +  QL EE+        +M  EA++W+++M++YNV GGKLNRG TV++V R +   KG  +S  E+A+AAVLGW IE+LQAFFLVADD+MDDS TRRGQPCW++   V L+A+NDSF+LES VF IL+RHFG+E +YT L +L  + T QTELGQLLDLTSQP   ++DL+RFT+QRY+LIVKYKTAFY+FYLP+A G+IL+G  +  +  AA+ + + MGEYFQVQDD LDCFGDP VIGKVGTDIQDNKCSWLVVQAL++    ++ +L  +YG  ++  V  +K LYR + L  +F +YEE SY  IQ  LD   +++PR VFEILL KIYKRSK
Sbjct:   37 GLVLILLAMVQTALASTATPSSRRFAVTKSPPPHTYPLAQLAAASSDKDKFLCLYPQLQEELCEWFATENEMTPEAVQWIREMLDYNVPGGKLNRGTTVLAVYRAL--KKGAPISEHEYAQAAVLGWTIEFLQAFFLVADDIMDDSQTRRGQPCWYKNQHVNLVAINDSFLLESAVFCILKRHFGNEPYYTELLELLLQTTQQTELGQLLDLTSQPQGNEVDLNRFTMQRYKLIVKYKTAFYSFYLPVALGMILAGNTDEASYQAAKEILLNMGEYFQVQDDYLDCFGDPSVIGKVGTDIQDNKCSWLVVQALERCNEEEKNVLRQNYGAWDDQKVETIKELYRTLDLPNVFAQYEEDSYQRIQKALD--EIDLPRDVFEILLNKIYKRSK 423          
The following BLAST results are available for this feature:
BLAST of NO22G01230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21458.19.900e-18883.29farnesyl pyrophosphate synthase [Nannochloropsis g... [more]
OQR93384.18.500e-11557.31farnesyl pyrophosphate synthetase [Achlya hypogyna... [more]
XP_008617319.17.200e-11456.73hypothetical protein SDRG_13014 [Saprolegnia dicli... [more]
XP_012206593.19.400e-11456.73hypothetical protein SPRG_10991 [Saprolegnia paras... [more]
GAX17802.18.000e-11358.09farnesyl diphosphate synthase [Fistulifera solaris... [more]
AKH49589.12.300e-11258.05farnesyl pyrophosphate synthase [Rhizosolenia seti... [more]
XP_002184024.15.200e-11264.40predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBN75787.11.500e-11154.67Farnesyl pyrophosphate synthase [Ectocarpus silicu... [more]
OQS04034.12.000e-11156.23farnesyl pyrophosphate synthetase [Thraustotheca c... [more]
GAX20074.12.600e-11153.45farnesyl diphosphate synthase [Fistulifera solaris... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004139NSK004139Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01230.1NO22G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595699gene_7126Nannochloropsis oceanica (N. oceanica CCMP1779)gene
FPPSgene8952Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01230.1NO22G01230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01230 ID=NO22G01230|Name=NO22G01230|organism=Nannochloropsis oceanica|type=gene|length=1511bp
ATGCCCGCTTCAGGAGCCTTAAGgtgagtaagtcatggtatactgttatc
gtgtgagagatgtctgtatggagacaagacgcggaggaagatgaggaacc
aataatcaagaaggtaatgctcacacccaccttcccacccacatacacac
ctacacacacaaacccatccctctacttgcatactttccaacagCAAAAC
ATTGGAGAAGGCCAAAGgtcagtgtgatatgtggggttgttccgacgtcc
atttcttcctcgtaacgtccttttcccctcctccgttgcaccaatatccc
ttccgcacaacgacacagCCGACATGTCTGCATCCTCCATGGCCGTGGGC
TTGGCAGCTGGCATCTTACTGGCGGTGGCCGTGCTCTACCCCAAAACTGG
GGCCCCAAAGGCCGACGCCGGCAAGGCCAAGCATGACTCTGACTTGTCGT
ATCCCGCCACGCTGCCCACGAATGAAAAAGAAGCTTTCAATGAGATCTGC
GACCAGCTTACGGAGGAGATTTTGTCAGAATTGCAGGGCACCTACGACAT
GCCTAAGGAGGCGATAGAGTGGGTTAAAAAGATGATCGAATATAATGTCA
AAGGCGGGAAGCTCAACCGGGGCCTAACTGTGGTTTCTGTCAAGCGCACC
ATCGACGCCGCCAAGGGAAATGCCTTGTCCACCCGGGAGTTTGCACGTGC
GGCGGTATTGGGGTGGTGCATCGAGTGGCTGCAGGCCTTTTTTCTGGTGG
CAGACGACGTCATGGACGATTCCGTGACTCGGCGGGGCCAGCCCTGCTGG
TTCCGCCTTCCCCAGGTAAAGCTAATCGCGGTGAACGACTCCTTTATTCT
CGAGTCCAACGTATTCCAGATCCTGAGACGGCACTTTGGCCATGAGGCGT
TCTACACCCCACTCTTCGATCTGTTCCGCGAGGTGACGCTGCAGACGGAG
CTGGGCCAACTGCTGGATCTGACTTCGCAGCCCATGGATGGCCAGATTGA
CCTGCACCGCTTTACCCTGCAGCGATACCAACTTATCGTCAAGTACAAAA
CGGCATTTTACACCTTTTATCTGCCGATCGCCTGCGGCCTTATTCTCTCG
GGCATGGGTGAGCCTGGCGCACTGGCCGCGGCGCGGCGAGTGTGCGTCTT
GATGGGCGAGTATTTCCAGGTGCAGGACGACGTTCTCGACTGCTTCGGCG
ACCCCAAAGTCATCGGCAAGGTGGGCACGGACATCCAGGACAACAAGTGC
TCCTGGCTCGTGGTGCAGGCCCTCGACAAGGCCACGCCGGCCCAGCGCAA
GATCCTCGAGACACACTACGGCAAGCACGAGGAGGCCTCGGTGGCGGCCG
TCAAGGCGCTCTACCGGGACATGGGACTGGAGATGCTCTTCAAAAAGTAC
GAGGAGCAGTCGTATGCGGCTATCCAGGCCGAGCTTGACGCCCTCCCTGT
CAACATACCCCGTCCTGTGTTTGAGATCTTGCTCAAGAAAATCTACAAGC
GCTCCAAGTAG
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protein sequence of NO22G01230.1

>NO22G01230.1-protein ID=NO22G01230.1-protein|Name=NO22G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MPASGALSKTLEKAKADMSASSMAVGLAAGILLAVAVLYPKTGAPKADAG
KAKHDSDLSYPATLPTNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEW
VKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCI
EWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQI
LRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQ
RYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQV
QDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYG
KHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVF
EILLKKIYKRSK*
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Synonyms
Publications