NO22G01230.1, NO22G01230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01230.1
Unique NameNO22G01230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1239
Alignment locationchr22:361806..363316 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:361806..363316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01230.1 vs.
Match: EWM21458.1 (farnesyl pyrophosphate synthase [Nannochloropsis gaditana])

HSP 1 Score: 665.6 bits (1716), Expect = 9.900e-188
Identity = 329/395 (83.29%), Postives = 356/395 (90.13%), Query Frame = 0 
Query:   18 MSASSMAVGLAAGILLAVAVLYPKTGAPKADAGKAKHDSDLSYPATLPTNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQRYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQVQDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYGKHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVFEILLKKIYKRSK 413
            MS  SMA+GLAAG LL+ A+LYP+  + K    K + D+DLSYP++LP +EKEAF EICDQLT E+L+EL+  Y++P EA EWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKG  LSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQIL+RHFGHE FY  LFDLFREVTLQTELGQLLDLTSQPMDGQIDL RFT QRYQLIVKYKTAFYTFYLPIACGLILSGMG P AL  ARRVCVLMGEYFQVQDD LDC+GDPK+IGKVGTDIQDNKCSWLVVQAL KATPAQR +LE HYGKHE++SVAAVK LYR+MGLE+LFK+YEEQSY AIQ ELDALP +IPRPVFE+LLKKIY+RSK
Sbjct:    1 MSGKSMAIGLAAGFLLSAALLYPRVRS-KTRTSKTEPDTDLSYPSSLPPDEKEAFIEICDQLTVELLTELKSRYELPAEASEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGRVLSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILKRHFGHEPFYVTLFDLFREVTLQTELGQLLDLTSQPMDGQIDLQRFTPQRYQLIVKYKTAFYTFYLPIACGLILSGMGHPAALTTARRVCVLMGEYFQVQDDYLDCYGDPKLIGKVGTDIQDNKCSWLVVQALAKATPAQRTVLEAHYGKHEDSSVAAVKTLYREMGLEVLFKQYEEQSYTAIQKELDALPADIPRPVFELLLKKIYRRSK 394
The following BLAST results are available for this feature:
BLAST of NO22G01230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21458.19.900e-18883.29farnesyl pyrophosphate synthase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01230NO22G01230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01230.1NO22G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01230.1.cds1NO22G01230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01230.1.cds2NO22G01230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01230.1.cds3NO22G01230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01230.1 ID=NO22G01230.1|Name=NO22G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
ATGCCCGCTTCAGGAGCCTTAAGCAAAACATTGGAGAAGGCCAAAGCCGA
CATGTCTGCATCCTCCATGGCCGTGGGCTTGGCAGCTGGCATCTTACTGG
CGGTGGCCGTGCTCTACCCCAAAACTGGGGCCCCAAAGGCCGACGCCGGC
AAGGCCAAGCATGACTCTGACTTGTCGTATCCCGCCACGCTGCCCACGAA
TGAAAAAGAAGCTTTCAATGAGATCTGCGACCAGCTTACGGAGGAGATTT
TGTCAGAATTGCAGGGCACCTACGACATGCCTAAGGAGGCGATAGAGTGG
GTTAAAAAGATGATCGAATATAATGTCAAAGGCGGGAAGCTCAACCGGGG
CCTAACTGTGGTTTCTGTCAAGCGCACCATCGACGCCGCCAAGGGAAATG
CCTTGTCCACCCGGGAGTTTGCACGTGCGGCGGTATTGGGGTGGTGCATC
GAGTGGCTGCAGGCCTTTTTTCTGGTGGCAGACGACGTCATGGACGATTC
CGTGACTCGGCGGGGCCAGCCCTGCTGGTTCCGCCTTCCCCAGGTAAAGC
TAATCGCGGTGAACGACTCCTTTATTCTCGAGTCCAACGTATTCCAGATC
CTGAGACGGCACTTTGGCCATGAGGCGTTCTACACCCCACTCTTCGATCT
GTTCCGCGAGGTGACGCTGCAGACGGAGCTGGGCCAACTGCTGGATCTGA
CTTCGCAGCCCATGGATGGCCAGATTGACCTGCACCGCTTTACCCTGCAG
CGATACCAACTTATCGTCAAGTACAAAACGGCATTTTACACCTTTTATCT
GCCGATCGCCTGCGGCCTTATTCTCTCGGGCATGGGTGAGCCTGGCGCAC
TGGCCGCGGCGCGGCGAGTGTGCGTCTTGATGGGCGAGTATTTCCAGGTG
CAGGACGACGTTCTCGACTGCTTCGGCGACCCCAAAGTCATCGGCAAGGT
GGGCACGGACATCCAGGACAACAAGTGCTCCTGGCTCGTGGTGCAGGCCC
TCGACAAGGCCACGCCGGCCCAGCGCAAGATCCTCGAGACACACTACGGC
AAGCACGAGGAGGCCTCGGTGGCGGCCGTCAAGGCGCTCTACCGGGACAT
GGGACTGGAGATGCTCTTCAAAAAGTACGAGGAGCAGTCGTATGCGGCTA
TCCAGGCCGAGCTTGACGCCCTCCCTGTCAACATACCCCGTCCTGTGTTT
GAGATCTTGCTCAAGAAAATCTACAAGCGCTCCAAGTAG
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protein sequence of NO22G01230.1

>NO22G01230.1-protein ID=NO22G01230.1-protein|Name=NO22G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MPASGALSKTLEKAKADMSASSMAVGLAAGILLAVAVLYPKTGAPKADAG
KAKHDSDLSYPATLPTNEKEAFNEICDQLTEEILSELQGTYDMPKEAIEW
VKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGNALSTREFARAAVLGWCI
EWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQI
LRRHFGHEAFYTPLFDLFREVTLQTELGQLLDLTSQPMDGQIDLHRFTLQ
RYQLIVKYKTAFYTFYLPIACGLILSGMGEPGALAAARRVCVLMGEYFQV
QDDVLDCFGDPKVIGKVGTDIQDNKCSWLVVQALDKATPAQRKILETHYG
KHEEASVAAVKALYRDMGLEMLFKKYEEQSYAAIQAELDALPVNIPRPVF
EILLKKIYKRSK*
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mRNA from alignment at chr22:361806..363316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01230.1 ID=NO22G01230.1|Name=NO22G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1511bp|location=Sequence derived from alignment at chr22:361806..363316- (Nannochloropsis oceanica)
ATGCCCGCTTCAGGAGCCTTAAGGTGAGTAAGTCATGGTATACTGTTATC
GTGTGAGAGATGTCTGTATGGAGACAAGACGCGGAGGAAGATGAGGAACC
AATAATCAAGAAGGTAATGCTCACACCCACCTTCCCACCCACATACACAC
CTACACACACAAACCCATCCCTCTACTTGCATACTTTCCAACAGCAAAAC
ATTGGAGAAGGCCAAAGGTCAGTGTGATATGTGGGGTTGTTCCGACGTCC
ATTTCTTCCTCGTAACGTCCTTTTCCCCTCCTCCGTTGCACCAATATCCC
TTCCGCACAACGACACAGCCGACATGTCTGCATCCTCCATGGCCGTGGGC
TTGGCAGCTGGCATCTTACTGGCGGTGGCCGTGCTCTACCCCAAAACTGG
GGCCCCAAAGGCCGACGCCGGCAAGGCCAAGCATGACTCTGACTTGTCGT
ATCCCGCCACGCTGCCCACGAATGAAAAAGAAGCTTTCAATGAGATCTGC
GACCAGCTTACGGAGGAGATTTTGTCAGAATTGCAGGGCACCTACGACAT
GCCTAAGGAGGCGATAGAGTGGGTTAAAAAGATGATCGAATATAATGTCA
AAGGCGGGAAGCTCAACCGGGGCCTAACTGTGGTTTCTGTCAAGCGCACC
ATCGACGCCGCCAAGGGAAATGCCTTGTCCACCCGGGAGTTTGCACGTGC
GGCGGTATTGGGGTGGTGCATCGAGTGGCTGCAGGCCTTTTTTCTGGTGG
CAGACGACGTCATGGACGATTCCGTGACTCGGCGGGGCCAGCCCTGCTGG
TTCCGCCTTCCCCAGGTAAAGCTAATCGCGGTGAACGACTCCTTTATTCT
CGAGTCCAACGTATTCCAGATCCTGAGACGGCACTTTGGCCATGAGGCGT
TCTACACCCCACTCTTCGATCTGTTCCGCGAGGTGACGCTGCAGACGGAG
CTGGGCCAACTGCTGGATCTGACTTCGCAGCCCATGGATGGCCAGATTGA
CCTGCACCGCTTTACCCTGCAGCGATACCAACTTATCGTCAAGTACAAAA
CGGCATTTTACACCTTTTATCTGCCGATCGCCTGCGGCCTTATTCTCTCG
GGCATGGGTGAGCCTGGCGCACTGGCCGCGGCGCGGCGAGTGTGCGTCTT
GATGGGCGAGTATTTCCAGGTGCAGGACGACGTTCTCGACTGCTTCGGCG
ACCCCAAAGTCATCGGCAAGGTGGGCACGGACATCCAGGACAACAAGTGC
TCCTGGCTCGTGGTGCAGGCCCTCGACAAGGCCACGCCGGCCCAGCGCAA
GATCCTCGAGACACACTACGGCAAGCACGAGGAGGCCTCGGTGGCGGCCG
TCAAGGCGCTCTACCGGGACATGGGACTGGAGATGCTCTTCAAAAAGTAC
GAGGAGCAGTCGTATGCGGCTATCCAGGCCGAGCTTGACGCCCTCCCTGT
CAACATACCCCGTCCTGTGTTTGAGATCTTGCTCAAGAAAATCTACAAGC
GCTCCAAGTAG
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Coding sequence (CDS) from alignment at chr22:361806..363316-

>NO22G01230.1 ID=NO22G01230.1|Name=NO22G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr22:361806..363316- (Nannochloropsis oceanica)
ATGCCCGCTTCAGGAGCCTTAAGCAAAACATTGGAGAAGGCCAAAGCCGA
CATGTCTGCATCCTCCATGGCCGTGGGCTTGGCAGCTGGCATCTTACTGG
CGGTGGCCGTGCTCTACCCCAAAACTGGGGCCCCAAAGGCCGACGCCGGC
AAGGCCAAGCATGACTCTGACTTGTCGTATCCCGCCACGCTGCCCACGAA
TGAAAAAGAAGCTTTCAATGAGATCTGCGACCAGCTTACGGAGGAGATTT
TGTCAGAATTGCAGGGCACCTACGACATGCCTAAGGAGGCGATAGAGTGG
GTTAAAAAGATGATCGAATATAATGTCAAAGGCGGGAAGCTCAACCGGGG
CCTAACTGTGGTTTCTGTCAAGCGCACCATCGACGCCGCCAAGGGAAATG
CCTTGTCCACCCGGGAGTTTGCACGTGCGGCGGTATTGGGGTGGTGCATC
GAGTGGCTGCAGGCCTTTTTTCTGGTGGCAGACGACGTCATGGACGATTC
CGTGACTCGGCGGGGCCAGCCCTGCTGGTTCCGCCTTCCCCAGGTAAAGC
TAATCGCGGTGAACGACTCCTTTATTCTCGAGTCCAACGTATTCCAGATC
CTGAGACGGCACTTTGGCCATGAGGCGTTCTACACCCCACTCTTCGATCT
GTTCCGCGAGGTGACGCTGCAGACGGAGCTGGGCCAACTGCTGGATCTGA
CTTCGCAGCCCATGGATGGCCAGATTGACCTGCACCGCTTTACCCTGCAG
CGATACCAACTTATCGTCAAGTACAAAACGGCATTTTACACCTTTTATCT
GCCGATCGCCTGCGGCCTTATTCTCTCGGGCATGGGTGAGCCTGGCGCAC
TGGCCGCGGCGCGGCGAGTGTGCGTCTTGATGGGCGAGTATTTCCAGGTG
CAGGACGACGTTCTCGACTGCTTCGGCGACCCCAAAGTCATCGGCAAGGT
GGGCACGGACATCCAGGACAACAAGTGCTCCTGGCTCGTGGTGCAGGCCC
TCGACAAGGCCACGCCGGCCCAGCGCAAGATCCTCGAGACACACTACGGC
AAGCACGAGGAGGCCTCGGTGGCGGCCGTCAAGGCGCTCTACCGGGACAT
GGGACTGGAGATGCTCTTCAAAAAGTACGAGGAGCAGTCGTATGCGGCTA
TCCAGGCCGAGCTTGACGCCCTCCCTGTCAACATACCCCGTCCTGTGTTT
GAGATCTTGCTCAAGAAAATCTACAAGCGCTCCAAGTAG
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Synonyms
Publications