NO22G01220, NO22G01220 (gene) Nannochloropsis oceanica

Overview
NameNO22G01220
Unique NameNO22G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1536
Alignment locationchr22:359807..361342 +

Link to JBrowse

Properties
Property NameValue
DescriptionsnRNA-activating protein complex, subunit 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:359807..361342 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022042snRNA-activating_su3
Homology
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: EWM21445.1 (snRNA-activating protein complex, subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 543.1 bits (1398), Expect = 9.200e-151
Identity = 278/523 (53.15%), Postives = 351/523 (67.11%), Query Frame = 0 
Query:    1 MSSVPYSVGNFASEFEYWPLPPDEEALTLPGYRPPGYFDCDDIALPTPKEAVERGMATALVRWADWEGMHMSPGMVEGQKLVRLPPGIKLKEHETEGE----RAVRIQSHSEKL--RGLAAKEATSIDVNSSSHAKGKAAGLVAGASGVRSXXXXXXXXXXXXXXXXXXXXXSPVGPDKETMLEILDLVPDLKRAETQLLARMRASQLALGRWRIANELEGGGMRDFRRLPFLRKTVNVVQAPAHVGTMAEAGTYA---VQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLR---RKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPIEVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHDD 512
            MS  P S+  FASEFE WPLP DEEAL L   RPPGYFDCDDIAL TP+E VE GM  AL  WADWE  H+S   +EGQ++VRLPPG++L+EH+ E +    R  R QS  E +  R   ++        S+ H   +  G +     V                       S  GPD+  ML+ILD VPD KR E  L +RM +SQLALGRWR+ANE  G GMRDFRRLPFLRK VNV+QAPAH    + A + A   +QDDEA+VT+T FG+RASMLYR +DY+L A NTLGDLHR+  C+LAA++A+ ++     + L   + AFFFIEGKFYA ++    K+G+ +                   +  ++ + +I+AW +E GK+RR QLGL +++  EVLDM+ V+L+DL+LR+GTRYLY HLGECEHHFN+SD+RL  P+D R+ ++YP LVFQKHYR+RRC  CDVR  KFC LGDPVGDDH+M+YCEFCHYLLHYDA+GHLLRDDFE+FPY+HDD
Sbjct:    1 MSLFPRSLRTFASEFELWPLPADEEALALSARRPPGYFDCDDIALRTPQEEVENGMVAALAHWADWEASHVSLASLEGQRVVRLPPGMRLREHDKEVDRDENRDSRTQSVQENMNERSPLSRNQGENGTPSAHHCGERVNGSIGSNLHV-----------------------SVEGPDELAMLDILDKVPDFKRVEAGLRSRMESSQLALGRWRLANEKFGAGMRDFRRLPFLRKAVNVIQAPAHSSMTSNAASEAGQLMQDDEALVTVTIFGNRASMLYRQEDYLLRAGNTLGDLHRVFSCSLAAMMAQGDQGDRSWDSLQAGIPAFFFIEGKFYAAMQPRGHKKGERE------EQTGVEHEEESHGRTVIEHLRSIMAWTDEPGKNRREQLGLGTEVDWEVLDMDRVRLSDLTLRIGTRYLYSHLGECEHHFNISDIRLLGPQDSRNCQDYPALVFQKHYRRRRCAVCDVRLGKFCALGDPVGDDHRMIYCEFCHYLLHYDAEGHLLRDDFELFPYMHDD 494
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: XP_016901523.1 (PREDICTED: snRNA-activating protein complex subunit-like [Cucumis melo] >XP_016901524.1 PREDICTED: snRNA-activating protein complex subunit-like [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 3.700e-27
Identity = 85/313 (27.16%), Postives = 144/313 (46.01%), Query Frame = 0 
Query:  201 QLALGRWRIANELEGGGMRDFRRLPFLRKTVNVVQAPAHVGTMAEAGTYAVQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPI---EVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHD 511
            QL   +W+   ++         RL  LR T +  + P HV +++     ++     ++ +  + H++  + + Q+++ L R TL +L   IYC+  A++ K         EL D+   +F +E  F   LR     +                  E ++  + I      +    + +   +G  SDL +     + M  V+  DL  RLG  YLYCH G+C+H   + D+RL  PED  D   YP++ FQ   R ++C  C++  AK   L D    ++   +CE C++LLHY  +G+LL +DF V  Y+ D
Sbjct:  205 QLHAFKWK--KDIASSSSESKERLKSLRSTNSSAKVP-HVKSLSGEKHESLHHPTTVLFVEVY-HKSRKMVKSQEFLALGRQTLAELKDKIYCSTDALMQK--------AELQDS-SGYFLVEDVFCNDLRNPSAID----YSKPILDWLRNSEDEARKKWECI------ITGESQQKNSVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD 494
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: XP_022142620.1 (snRNA-activating protein complex subunit [Momordica charantia] >XP_022142621.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142622.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142623.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142624.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142625.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142626.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142627.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142628.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142629.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142630.1 snRNA-activating protein complex subunit [Momordica charantia] >XP_022142631.1 snRNA-activating protein complex subunit [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 3.700e-27
Identity = 77/282 (27.30%), Postives = 131/282 (46.45%), Query Frame = 0 
Query:  229 KTVNVVQAPAHVGTMAEAGTYAVQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPIEVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHD 511
            K++    + A V +++     A+Q    ++ I  + H++  + + Q+++   R TL +L   +YC    ++ K  +Q +           +F IE  F   LR    D                   E ++     + II   +++      ++ +S       + M  ++  DL  RLG  YLYCH G C+H   + D+RL  PED  D   YP+L FQ   R ++C AC++  AK   L D    ++   +CE C++LLHY  +G+LL +DF V+ Y+HD
Sbjct:  203 KSLRSTNSSAKVKSLSSGNHEALQHPTTVLFIEVY-HKSRKMVKTQEFLAHGRQTLAELKDKLYCLTDKLMVKAGQQDS---------SGYFLIEDVFCNDLR----DPSAVDYSKPVFDWLRNSEDEARKKW---ECIIMGESQQKNTVAGEVSVSHVPHFRSVSMNKIRFCDLKFRLGAGYLYCHQGNCKHTIVIRDMRLIHPEDVHDRAAYPILTFQLRTRVQKCDACNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVYDYLHD 467
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: XP_644064.1 (hypothetical protein DDB_G0274687 [Dictyostelium discoideum AX4] >EAL70236.1 hypothetical protein DDB_G0274687 [Dictyostelium discoideum AX4])

HSP 1 Score: 131.0 bits (328), Expect = 1.100e-26
Identity = 72/241 (29.88%), Postives = 106/241 (43.98%), Query Frame = 0 
Query:  270 LYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPIEVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHD 511
            L +  D ++L  + L  L   IYC    +L   N +             FFFI   FY   R                          + N  +    +AW+ ERGKD        S+   E   M+ V   DL + +G RYLYCH G CEH      +R+ +  D  +   YP++ +Q+  R+R+C+ CD+  AK+  LGD   D+    YC+ C+   HY   GHLL  +++VFPY H+
Sbjct:  809 LRKTMDILVLGSHKLTVLRDKIYCLSDCILDGSNRKS-----------GFFFINNVFYNDNR-------------------------DQRNYQYSKNTLAWLKERGKD-------ISNFKEE--SMDDVTFNDLEISIGERYLYCHQGSCEHLVTFESLRMVNEMDDLEPSRYPIITYQQKVRRRKCLVCDIYAAKYVTLGDQFADETPFFYCDECYRTFHYSKDGHLLYSNYQVFPYYHE 1004
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: XP_008459093.1 (PREDICTED: snRNA-activating protein complex subunit-like isoform X1 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.400e-26
Identity = 86/342 (25.15%), Postives = 153/342 (44.74%), Query Frame = 0 
Query:  178 EILDLVPDLKRAETQLLARMRASQLA------LGRWRIANELEGGGMRDFRRLPFLRKTVNVVQAPAHVGTMAEAGTYAVQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPI---EVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHD 511
            E L ++ +   A+   +A+++  Q A      L  ++   ++         RL  LR T    + P HV ++ +    ++     ++ +  + H++  + + Q+++ L R TL +L   IYC+   ++ K  +Q +           +F +E  F   LR     +                  E ++  + I      +    + +   +G  SDL +     + M  V+  DL  RLG  YLYCH G+C+H   + D+RL  PED  D   YP++ FQ   R ++C  C++  AK   L D    ++   +CE C++LLHY  +G+LL +DF V  Y+ D
Sbjct:  186 EELSIIEEKSIAKVAEIAKLKQKQEADRAVVQLHAFKWKKDIASSSSESKERLKSLRSTNTSAKVP-HVKSLNDGKHESLHHPMTVLFVEVY-HKSRKMVKSQEFLALGRQTLAELKDKIYCSTDTLMQKAEQQDS---------SGYFLVEDVFCNDLRNPSAID----YSKPILDWLRNSEDEARKKWECI------ITGELQQKNSVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKFTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD 506
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: XP_008459094.1 (PREDICTED: snRNA-activating protein complex subunit-like isoform X2 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.400e-26
Identity = 86/342 (25.15%), Postives = 153/342 (44.74%), Query Frame = 0 
Query:  178 EILDLVPDLKRAETQLLARMRASQLA------LGRWRIANELEGGGMRDFRRLPFLRKTVNVVQAPAHVGTMAEAGTYAVQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPI---EVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHD 511
            E L ++ +   A+   +A+++  Q A      L  ++   ++         RL  LR T    + P HV ++ +    ++     ++ +  + H++  + + Q+++ L R TL +L   IYC+   ++ K  +Q +           +F +E  F   LR     +                  E ++  + I      +    + +   +G  SDL +     + M  V+  DL  RLG  YLYCH G+C+H   + D+RL  PED  D   YP++ FQ   R ++C  C++  AK   L D    ++   +CE C++LLHY  +G+LL +DF V  Y+ D
Sbjct:  174 EELSIIEEKSIAKVAEIAKLKQKQEADRAVVQLHAFKWKKDIASSSSESKERLKSLRSTNTSAKVP-HVKSLNDGKHESLHHPMTVLFVEVY-HKSRKMVKSQEFLALGRQTLAELKDKIYCSTDTLMQKAEQQDS---------SGYFLVEDVFCNDLRNPSAID----YSKPILDWLRNSEDEARKKWECI------ITGELQQKNSVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKFTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD 494
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: XP_008459095.1 (PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo] >XP_008459096.1 PREDICTED: snRNA-activating protein complex subunit-like isoform X3 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.400e-26
Identity = 86/342 (25.15%), Postives = 153/342 (44.74%), Query Frame = 0 
Query:  178 EILDLVPDLKRAETQLLARMRASQLA------LGRWRIANELEGGGMRDFRRLPFLRKTVNVVQAPAHVGTMAEAGTYAVQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPI---EVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHD 511
            E L ++ +   A+   +A+++  Q A      L  ++   ++         RL  LR T    + P HV ++ +    ++     ++ +  + H++  + + Q+++ L R TL +L   IYC+   ++ K  +Q +           +F +E  F   LR     +                  E ++  + I      +    + +   +G  SDL +     + M  V+  DL  RLG  YLYCH G+C+H   + D+RL  PED  D   YP++ FQ   R ++C  C++  AK   L D    ++   +CE C++LLHY  +G+LL +DF V  Y+ D
Sbjct:  161 EELSIIEEKSIAKVAEIAKLKQKQEADRAVVQLHAFKWKKDIASSSSESKERLKSLRSTNTSAKVP-HVKSLNDGKHESLHHPMTVLFVEVY-HKSRKMVKSQEFLALGRQTLAELKDKIYCSTDTLMQKAEQQDS---------SGYFLVEDVFCNDLRNPSAID----YSKPILDWLRNSEDEARKKWECI------ITGELQQKNSVVGEVSDLHVPHFRSVSMSKVRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRAQKCDVCNIYRAKKFTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYLQD 481
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: XP_022927319.1 (snRNA-activating protein complex subunit [Cucurbita moschata] >XP_022927320.1 snRNA-activating protein complex subunit [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 1.400e-26
Identity = 83/306 (27.12%), Postives = 134/306 (43.79%), Query Frame = 0 
Query:  223 RLPFLRKTVNVVQAPAHVGTMAEAGTYAVQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGL-----------------SSDLP-IEVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHD 511
            RL  LR T    + P  V +++     A+Q    ++ +  + H++  + + Q+++ L R TL +L   IYC    ++ K  +        ND+   +F IE  F   LR                             +D+   I+ W+     + R + G                   S +P    + M  ++  DL  RLG  YLYCH G+C+H   + D+RL  PED  D   YP++ FQ   R ++C  C++  AK   L D    ++   +CE C++LLHY  +G+LL +DF V  Y+HD
Sbjct:  199 RLKSLRSTKFSAKVP-QVKSLSSVKHEALQHPTTVLFVEVY-HKSRKMMKTQEFLALGRQTLAELKDKIYCVTNKLMEKAGQ--------NDS-SGYFLIEDVFCNDLRNPSA-------------------------IDYSKPILDWLRNSEDEARKKWGCIITGESQQKNSVLGEVSVSHVPHFRSVSMSKIRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRVQKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYVHD 468
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: XP_023000926.1 (snRNA-activating protein complex subunit [Cucurbita maxima] >XP_023000927.1 snRNA-activating protein complex subunit [Cucurbita maxima])

HSP 1 Score: 130.2 bits (326), Expect = 1.900e-26
Identity = 80/288 (27.78%), Postives = 131/288 (45.49%), Query Frame = 0 
Query:  223 RLPFLRKTVNVVQAPAHVGTMAEAGTYAVQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPIEVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHD 511
            RL  LR T    + P  V +++     A+Q    ++ +  + H++  + + Q+++ L R TL +L   IYC    ++ K  +        ND+   +F IE  F   LR     +                     E       II   +++      ++ +S       + M  ++  DL  RLG  YLYCH G+C+H   + D+RL  PED  D   YP++ FQ   R ++C  C++  AK   L D    ++   +CE C++LLHY  +G+LL +DF V  Y+HD
Sbjct:  199 RLKSLRSTKFSAKVP-QVKSLSSVKHEALQHPTTVLFVEVY-HKSRKMMKTQEFLALGRQTLAELKDKIYCVTNKLMEKAGQ--------NDS-SGYFLIEDVFCNDLRNPSAID-------YSKPILDWLRNSEDEACKKWGCIITGESQQKNSVLGEVSVSHVPHFRSVSMSKIRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRVQKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYVHD 468
[Close]
BLAST of NO22G01220 vs. NCBI_GenBank
Match: XP_023519552.1 (snRNA-activating protein complex subunit [Cucurbita pepo subsp. pepo] >XP_023519553.1 snRNA-activating protein complex subunit [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 1.900e-26
Identity = 82/306 (26.80%), Postives = 134/306 (43.79%), Query Frame = 0 
Query:  223 RLPFLRKTVNVVQAPAHVGTMAEAGTYAVQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLAKENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKXXXXXXXXXXXXXXXXXERKENLDFIDAIIAWVNERGKDRRMQLGL-----------------SSDLP-IEVLDMETVQLADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKHYRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRDDFEVFPYIHD 511
            RL  LR T    + P  V +++     A+Q    ++ +  + H++  + + Q+++ L R TL +L   IYC    ++ K  +        ND+   +F IE  F   LR                             +D+   ++ W+     + R + G                   S +P    + M  ++  DL  RLG  YLYCH G+C+H   + D+RL  PED  D   YP++ FQ   R ++C  C++  AK   L D    ++   +CE C++LLHY  +G+LL +DF V  Y+HD
Sbjct:  199 RLKSLRSTKFSAKVP-QVKSLSSVKHEALQHPTTVLFVEVY-HKSRKMMKTQEFLALGRQTLAELKDKIYCVTNKLMEKAGQ--------NDS-SGYFLIEDVFCNDLRNPSA-------------------------IDYSKPVLDWLRNSEDEARKKWGCIITGESQQINSVLGEVSVSHVPHFRSVSMSKIRFCDLKFRLGAGYLYCHQGDCKHTIVIRDMRLIHPEDVHDRAAYPIVTFQLRTRVQKCDVCNIYRAKKVTLDDKWAQENPCYFCEDCYFLLHYSKEGNLLYNDFVVHDYVHD 468
The following BLAST results are available for this feature:
BLAST of NO22G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21445.19.200e-15153.15snRNA-activating protein complex, subunit 3 [Nanno... [more]
XP_016901523.13.700e-2727.16PREDICTED: snRNA-activating protein complex subuni... [more]
XP_022142620.13.700e-2727.30snRNA-activating protein complex subunit [Momordic... [more]
XP_644064.11.100e-2629.88hypothetical protein DDB_G0274687 [Dictyostelium d... [more]
XP_008459093.11.400e-2625.15PREDICTED: snRNA-activating protein complex subuni... [more]
XP_008459094.11.400e-2625.15PREDICTED: snRNA-activating protein complex subuni... [more]
XP_008459095.11.400e-2625.15PREDICTED: snRNA-activating protein complex subuni... [more]
XP_022927319.11.400e-2627.12snRNA-activating protein complex subunit [Cucurbit... [more]
XP_023000926.11.900e-2627.78snRNA-activating protein complex subunit [Cucurbit... [more]
XP_023519552.11.900e-2626.80snRNA-activating protein complex subunit [Cucurbit... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004140NSK004140Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01220.1NO22G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595697gene_7125Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g41gene8953Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01220.1NO22G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01220 ID=NO22G01220|Name=NO22G01220|organism=Nannochloropsis oceanica|type=gene|length=1536bp
ATGTCGTCGGTGCCGTATTCCGTAGGGAACTTTGCCAGCGAGTTTGAGTA
CTGGCCTTTGCCACCAGATGAAGAGGCCTTGACACTTCCGGGGTATCGGC
CCCCAGGGTATTTTGACTGTGACGACATTGCGTTGCCCACGCCCAAGGAG
GCAGTGGAAAGGGGCATGGCAACTGCACTGGTTCGATGGGCGGATTGGGA
GGGCATGCATATGTCCCCTGGGATGGTGGAAGGGCAGAAGCTTGTGCGCT
TACCCCCGGGTATCAAGCTCAAGGAGCATGAGACGGAGGGGGAGCGGGCG
GTGCGGATTCAGTCCCACTCAGAAAAGCTACGCGGGCTCGCGGCCAAAGA
AGCGACCTCCATTGACGTCAACAGCTCGTCGCATGCAAAGGGCAAGGCGG
CGGGGCTGGTGGCCGGTGCGTCGGGGGTAAGAAGCGCGAGCGGTGGTGGT
GGAGGTGATAGTGGCTGCTGTTGTCCGCCATCCACAGCCGGCGAGGAATC
GCCCGTGGGTCCGGACAAGGAGACGATGCTAGAAATTTTAGATTTAGTAC
CCGACCTTAAGCGGGCCGAAACTCAGTTGCTTGCGCGAATGCGGGCCTCG
CAGCTGGCCCTGGGCCGGTGGCGCATCGCCAACGAGCTGGAGGGGGGAGG
CATGCGGGACTTTCGACGGCTTCCCTTCTTACGTAAAACCGTCAATGTGG
TCCAGGCACCGGCACATGTTGGCACGATGGCTGAGGCAGGTACTTACGCC
GTGCAAGACGACGAGGCGATGGTGACCATTACGACGTTTGGACATCGGGC
ATCCATGCTGTACCGGTACCAGGACTACATGCTCCTGGCCCGCAACACGC
TAGGGGACCTGCACCGGATGATTTATTGCACACTGGCGGCCGTGCTGGCC
AAGGAGAACGAGCAGGGAAACGTCCCCGAGGAATTAAATGACAACTTGCT
GGCTTTCTTTTTTATTGAGGGCAAGTTTTACGCGACCCTGCGCAGGAAGG
AGGGGGACGAAAAGGAGGAGATAGAGGCGGAGACGGAGAAGGAGGAAGAG
GAGGGAAGGAGCAACGAGAGGAAAGAGAACCTGGATTTCATCGACGCCAT
TATCGCCTGGGTGAATGAGCGTGGCAAAGACCGACGGATGCAGCTGGGCT
TGAGCTCCGACTTGCCTATCGAGGTGCTAGACATGGAGACGGTGCAGCTC
GCCGACCTGTCTCTGCGTTTGGGCACGAGGTACCTATATTGCCACCTGGG
AGAGTGTGAGCACCACTTCAACGTCTCCGACGTACGTTTGCCGAGCCCCG
AGGACCCCCGCGATGGTCGGGAGTACCCGCTGTTGGTCTTCCAGAAGCAC
TACCGGAAGCGACGCTGCATGGCGTGTGACGTGCGACCAGCCAAGTTTTG
TGTCCTGGGCGATCCAGTGGGGGACGACCACAAAATGGTCTATTGCGAGT
TCTGCCATTACTTGCTGCACTACGACGCGCAAGGACACTTGCTGCGGGAT
GACTTTGAGGTCTTCCCCTACATTCATGACGATTGA
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protein sequence of NO22G01220.1

>NO22G01220.1-protein ID=NO22G01220.1-protein|Name=NO22G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MSSVPYSVGNFASEFEYWPLPPDEEALTLPGYRPPGYFDCDDIALPTPKE
AVERGMATALVRWADWEGMHMSPGMVEGQKLVRLPPGIKLKEHETEGERA
VRIQSHSEKLRGLAAKEATSIDVNSSSHAKGKAAGLVAGASGVRSASGGG
GGDSGCCCPPSTAGEESPVGPDKETMLEILDLVPDLKRAETQLLARMRAS
QLALGRWRIANELEGGGMRDFRRLPFLRKTVNVVQAPAHVGTMAEAGTYA
VQDDEAMVTITTFGHRASMLYRYQDYMLLARNTLGDLHRMIYCTLAAVLA
KENEQGNVPEELNDNLLAFFFIEGKFYATLRRKEGDEKEEIEAETEKEEE
EGRSNERKENLDFIDAIIAWVNERGKDRRMQLGLSSDLPIEVLDMETVQL
ADLSLRLGTRYLYCHLGECEHHFNVSDVRLPSPEDPRDGREYPLLVFQKH
YRKRRCMACDVRPAKFCVLGDPVGDDHKMVYCEFCHYLLHYDAQGHLLRD
DFEVFPYIHDD*
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Synonyms
Publications