NO22G01210, NO22G01210 (gene) Nannochloropsis oceanica

Overview
NameNO22G01210
Unique NameNO22G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr22:358561..359337 -

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Properties
Property NameValue
DescriptionSUMO-conjugating enzyme
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:358561..359337 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0019789SUMO transferase activity
GO:0016740transferase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR027230Ubc9
IPR000608UBQ-conjugat_E2
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Homology
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: EWM21470.1 (ubiquitin-conjugating enzyme e2 i [Nannochloropsis gaditana])

HSP 1 Score: 325.1 bits (832), Expect = 1.200e-85
Identity = 149/160 (93.12%), Postives = 156/160 (97.50%), Query Frame = 0 
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRNTPAT 161
            MSGGIARGRLQEERKAWRKDHPHGF+ARP + ADGSMNLM WDC IPGKEGTDW+GGV+KVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNP+SPAQA+AYQLFVTNREEYRRRVRIEAKRNTPA+
Sbjct:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: XP_002288880.1 (ubiquitin conjugating enzyme [Thalassiosira pseudonana CCMP1335] >EED94316.1 ubiquitin conjugating enzyme [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 273.9 bits (699), Expect = 3.300e-70
Identity = 121/159 (76.10%), Postives = 140/159 (88.05%), Query Frame = 0 
Query:    2 SGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRNTPAT 161
            S GIARGRL EERKAWR+DHP+GF ARP    DGS +LM W+ GIPGKEGTDW+ GVYKV +EFS++YPSKPPKCKFVP LFHPNVYPSGT+CLSILNE+E WRPAITVKQMLLGIQDLLD+PNP SPAQ+EAY LF+ N+ EY+RRV+ EA++NTP+T
Sbjct:    3 SSGIARGRLAEERKAWRRDHPYGFYARPVSRGDGSSDLMKWETGIPGKEGTDWESGVYKVMLEFSDEYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTPST 161
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: OEU16474.1 (ubiquitin-conjugating enzyme [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 269.2 bits (687), Expect = 8.000e-69
Identity = 119/156 (76.28%), Postives = 139/156 (89.10%), Query Frame = 0 
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRN 157
            MS GIARGRL EERKAWR+DHP+GF ARPT   DGS ++M W+ GIPGKEGTDW+ GVYKV+MEF+EDYPSKPPKCKFVP LFHPNVYPSGT+CLSILNE+E WRPAIT+KQ+L+GIQDLLD PNP SPAQ+EAYQL++ N+ EY+RRV+ EAK+N
Sbjct:    1 MSSGIARGRLVEERKAWRRDHPYGFYARPTSKGDGSSDIMKWEAGIPGKEGTDWERGVYKVSMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILNEEEGWRPAITLKQVLIGIQDLLDDPNPNSPAQSEAYQLYMNNKPEYKRRVKNEAKKN 156
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: XP_024364251.1 (SUMO-conjugating enzyme SCE1 [Physcomitrella patens] >PNR28695.1 hypothetical protein PHYPA_029288 [Physcomitrella patens])

HSP 1 Score: 261.9 bits (668), Expect = 1.300e-66
Identity = 117/158 (74.05%), Postives = 133/158 (84.18%), Query Frame = 0 
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRNTP 159
            MSGGIARGRL EERKAWRK+HPHGF+ARP  GADG++NLMVW C +PGK GTDW+GG Y V + FSEDYPSKPPKCKF    FHPNVYPSGTVCLSILNED  WRPAITVKQ+L+GIQ+LLD+PNP  PAQ EAYQLF+ +  EY+RRVR +AK+  P
Sbjct:    1 MSGGIARGRLAEERKAWRKNHPHGFVARPETGADGALNLMVWQCTLPGKVGTDWEGGFYPVAIHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQELLDAPNPADPAQTEAYQLFIQDPVEYKRRVRQQAKQYPP 158
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: OAE27097.1 (hypothetical protein AXG93_4278s1160 [Marchantia polymorpha subsp. ruderalis] >PTQ28449.1 hypothetical protein MARPO_0163s0010 [Marchantia polymorpha] >PTQ28450.1 hypothetical protein MARPO_0163s0010 [Marchantia polymorpha] >PTQ28451.1 hypothetical protein MARPO_0163s0010 [Marchantia polymorpha])

HSP 1 Score: 261.9 bits (668), Expect = 1.300e-66
Identity = 116/158 (73.42%), Postives = 134/158 (84.81%), Query Frame = 0 
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRNTP 159
            MSGGIARGRL EERKAWRK+HPHGF+ARP  GADGSMNLM+W C +PGK GTDW+GG + + + FSEDYPSKPPKCKF  + FHPNVYPSGTVCLSILNED  WRPAITVKQ+L+GIQ+LLD+PNP  PAQ EAYQLF+ + EEY+RRV+ +AK   P
Sbjct:    1 MSGGIARGRLAEERKAWRKNHPHGFVARPDSGADGSMNLMIWQCILPGKVGTDWEGGFFPLAIHFSEDYPSKPPKCKFPASFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQELLDAPNPADPAQTEAYQLFIQDPEEYKRRVKQQAKNYPP 158
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: CDP01300.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 261.5 bits (667), Expect = 1.700e-66
Identity = 117/158 (74.05%), Postives = 131/158 (82.91%), Query Frame = 0 
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRNTP 159
            MSGGIARGRL EERKAWRK+HPHGF+A+P  GADGS+NLMVW C IPGK GTDW+GG Y +TM FSEDYPSKPPKCKF    FHPNVYPSGTVCLSILNED  WRPAITVKQ+L+GIQDLLD PNP  PAQ E YQ+++    EY+RRVR +AK+  P
Sbjct:    1 MSGGIARGRLAEERKAWRKNHPHGFVAKPESGADGSVNLMVWHCTIPGKAGTDWEGGYYPLTMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYQMYMQEPAEYKRRVRQQAKQYPP 158
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: CBJ27032.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 261.2 bits (666), Expect = 2.200e-66
Identity = 115/157 (73.25%), Postives = 136/157 (86.62%), Query Frame = 0 
Query:    4 GIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRNTPAT 161
            GIA  RL+EERKAWR+DHP GF A+P +  D S +L+ W+CG+PG   TDW GG+Y VTMEF+EDYPSKPPKCKFVP LFHPNVYPSGT+CLSIL+EDE WRPAIT+KQMLLGI DL D+PNP SPAQ+EAYQLFVTN+EEY+RRVR+EA++N P+T
Sbjct:    3 GIAEARLREERKAWRRDHPVGFHAKPMLKDDSSTDLLRWECGLPGPADTDWAGGLYTVTMEFTEDYPSKPPKCKFVPPLFHPNVYPSGTICLSILDEDEGWRPAITIKQMLLGIHDLFDTPNPNSPAQSEAYQLFVTNKEEYKRRVRLEAQKNIPST 159
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: AEI83503.1 (ubiquitin-conjugating enzyme E2 I [Wolffia arrhiza])

HSP 1 Score: 261.2 bits (666), Expect = 2.200e-66
Identity = 113/155 (72.90%), Postives = 132/155 (85.16%), Query Frame = 0 
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKR 156
            MSGG+ARGRL EERK+WRK+HPHGF+ARP    DGS+NLM+W C IPGK+GTDWDGG + +T+ FSEDYPSKPPKCKF P  FHPN+YPSGTVCLSILNED+ WRPAITVKQ+L GIQDLLD PNP  PAQ E YQLF+ +  EY+RRVR++AK+
Sbjct:    1 MSGGVARGRLTEERKSWRKNHPHGFVARPETLPDGSVNLMIWQCLIPGKQGTDWDGGFFPITLHFSEDYPSKPPKCKFPPGFFHPNIYPSGTVCLSILNEDKGWRPAITVKQILTGIQDLLDQPNPADPAQTEGYQLFIQDPTEYKRRVRLQAKQ 155
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: XP_002180700.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48108.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 261.2 bits (666), Expect = 2.200e-66
Identity = 114/158 (72.15%), Postives = 135/158 (85.44%), Query Frame = 0 
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRNTP 159
            MS GIA+GRL EERKAWRKDHP GF ARPT   DGS ++  W+ GIPGK GTDW+GG++KV MEFSE+YPS+PPKCKF P LFHPNVYPSGT+CLSILNE+E WRPAIT+KQ+L GIQDLLD PNP SPAQ+EA  LF++N+ EY+RRV+IEA++N P
Sbjct:    1 MSAGIAKGRLSEERKAWRKDHPIGFYARPTSKGDGSSDMFTWEAGIPGKSGTDWEGGLFKVRMEFSEEYPSRPPKCKFFPPLFHPNVYPSGTICLSILNEEEGWRPAITIKQVLTGIQDLLDDPNPDSPAQSEAINLFLSNKAEYKRRVKIEARKNQP 158
[Close]
BLAST of NO22G01210 vs. NCBI_GenBank
Match: XP_020085574.1 (SUMO-conjugating enzyme SCE1-like [Ananas comosus])

HSP 1 Score: 261.2 bits (666), Expect = 2.200e-66
Identity = 117/158 (74.05%), Postives = 133/158 (84.18%), Query Frame = 0 
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRNTP 159
            MSGGIARGRL EERKAWRK+HPHGF+ARP   ADGS+NLMVW+C IPGK+GTDWDGG + +T+ FSEDYPSKPPKCKF    FHPNVYPSGTVCLSILNED  WRPAITVKQ+L+GIQDLLD PNP  PAQ + YQLF+ +  EY+RRVR +AK+  P
Sbjct:    1 MSGGIARGRLAEERKAWRKNHPHGFVARPETLADGSVNLMVWNCTIPGKQGTDWDGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDIAEYKRRVRQQAKQYPP 158
The following BLAST results are available for this feature:
BLAST of NO22G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21470.11.200e-8593.13ubiquitin-conjugating enzyme e2 i [Nannochloropsis... [more]
XP_002288880.13.300e-7076.10ubiquitin conjugating enzyme [Thalassiosira pseudo... [more]
OEU16474.18.000e-6976.28ubiquitin-conjugating enzyme [Fragilariopsis cylin... [more]
XP_024364251.11.300e-6674.05SUMO-conjugating enzyme SCE1 [Physcomitrella paten... [more]
OAE27097.11.300e-6673.42hypothetical protein AXG93_4278s1160 [Marchantia p... [more]
CDP01300.11.700e-6674.05unnamed protein product [Coffea canephora][more]
CBJ27032.12.200e-6673.25conserved unknown protein [Ectocarpus siliculosus][more]
AEI83503.12.200e-6672.90ubiquitin-conjugating enzyme E2 I [Wolffia arrhiza... [more]
XP_002180700.12.200e-6672.15predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_020085574.12.200e-6674.05SUMO-conjugating enzyme SCE1-like [Ananas comosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004141NSK004141Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01210.1NO22G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595693gene_7124Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g40gene8954Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01210.1NO22G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01210 ID=NO22G01210|Name=NO22G01210|organism=Nannochloropsis oceanica|type=gene|length=777bp
ATGAGTGGAGGCATCGCCCGGGGACGGTTGCAAGAGGAGAGGAAAGCCTG
GCGCAAGGACCACCCCCACGGCTTTATTGCGCGCCCTACAATGGGTGCCG
ATGGCTCGATGAACTTGATGGTCTGGGACTGTGGCATTCCGGGAAAGgta
cgtgagagcggagtgcggcggtgatcagggaggaggtagatgtgggacga
agaaagaagagagggagagggcttgctgcatttgtgtatgtatgttgtgt
tttggcaaccagcttcttgatcactttgaaatatgaacgctgtatctttt
tctgtactactcattgcctttggggacgtggctagaagtggaattcggcc
tcggtgtcgattgtgggctggtcattctttgtggacgtgcaatgacctct
tgtttttttcctccccacctttcttctctttctcaaaaaagGAGGGAACG
GACTGGGACGGCGGCGTATACAAGGTAACAATGGAATTCTCGGAAGACTA
TCCGTCCAAGCCGCCCAAATGCAAGTTCGTACCGGCCCTCTTCCACCCGA
ACGTCTACCCGTCCGGCACTGTCTGCCTCTCCATCCTCAACGAAGACGAG
GACTGGCGGCCTGCCATCACGGTCAAGCAGATGCTGCTGGGCATTCAGGA
CCTGTTGGACAGCCCAAATCCCCAGAGTCCGGCCCAGGCGGAGGCCTACC
AGCTGTTTGTGACCAACCGGGAGGAGTACCGCCGCCGAGTGCGCATCGAG
GCCAAGCGCAACACGCCCGCAACTTAG
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protein sequence of NO22G01210.1

>NO22G01210.1-protein ID=NO22G01210.1-protein|Name=NO22G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKE
GTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNE
DEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVR
IEAKRNTPAT*
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Synonyms
Publications