NO22G01210.1, NO22G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01210.1
Unique NameNO22G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length483
Alignment locationchr22:358561..359337 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:358561..359337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01210.1 vs.
Match: EWM21470.1 (ubiquitin-conjugating enzyme e2 i [Nannochloropsis gaditana])

HSP 1 Score: 325.1 bits (832), Expect = 1.200e-85
Identity = 149/160 (93.12%), Postives = 156/160 (97.50%), Query Frame = 0 
Query:    1 MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKEGTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVRIEAKRNTPAT 161
            MSGGIARGRLQEERKAWRKDHPHGF+ARP + ADGSMNLM WDC IPGKEGTDW+GGV+KVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNP+SPAQA+AYQLFVTNREEYRRRVRIEAKRNTPA+
Sbjct:    1 MSGGIARGRLQEERKAWRKDHPHGFVARPVLDADGSMNLMSWDCSIPGKEGTDWEGGVFKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNEDEDWRPAITVKQMLLGIQDLLDSPNPESPAQAQAYQLFVTNREEYRRRVRIEAKRNTPAS 160
The following BLAST results are available for this feature:
BLAST of NO22G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21470.11.200e-8593.13ubiquitin-conjugating enzyme e2 i [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01210NO22G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01210.1NO22G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01210.1.cds1NO22G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01210.1.cds2NO22G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01210.1 ID=NO22G01210.1|Name=NO22G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=483bp
ATGAGTGGAGGCATCGCCCGGGGACGGTTGCAAGAGGAGAGGAAAGCCTG
GCGCAAGGACCACCCCCACGGCTTTATTGCGCGCCCTACAATGGGTGCCG
ATGGCTCGATGAACTTGATGGTCTGGGACTGTGGCATTCCGGGAAAGGAG
GGAACGGACTGGGACGGCGGCGTATACAAGGTAACAATGGAATTCTCGGA
AGACTATCCGTCCAAGCCGCCCAAATGCAAGTTCGTACCGGCCCTCTTCC
ACCCGAACGTCTACCCGTCCGGCACTGTCTGCCTCTCCATCCTCAACGAA
GACGAGGACTGGCGGCCTGCCATCACGGTCAAGCAGATGCTGCTGGGCAT
TCAGGACCTGTTGGACAGCCCAAATCCCCAGAGTCCGGCCCAGGCGGAGG
CCTACCAGCTGTTTGTGACCAACCGGGAGGAGTACCGCCGCCGAGTGCGC
ATCGAGGCCAAGCGCAACACGCCCGCAACTTAG
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protein sequence of NO22G01210.1

>NO22G01210.1-protein ID=NO22G01210.1-protein|Name=NO22G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MSGGIARGRLQEERKAWRKDHPHGFIARPTMGADGSMNLMVWDCGIPGKE
GTDWDGGVYKVTMEFSEDYPSKPPKCKFVPALFHPNVYPSGTVCLSILNE
DEDWRPAITVKQMLLGIQDLLDSPNPQSPAQAEAYQLFVTNREEYRRRVR
IEAKRNTPAT*
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mRNA from alignment at chr22:358561..359337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01210.1 ID=NO22G01210.1|Name=NO22G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at chr22:358561..359337- (Nannochloropsis oceanica)
ATGAGTGGAGGCATCGCCCGGGGACGGTTGCAAGAGGAGAGGAAAGCCTG
GCGCAAGGACCACCCCCACGGCTTTATTGCGCGCCCTACAATGGGTGCCG
ATGGCTCGATGAACTTGATGGTCTGGGACTGTGGCATTCCGGGAAAGGTA
CGTGAGAGCGGAGTGCGGCGGTGATCAGGGAGGAGGTAGATGTGGGACGA
AGAAAGAAGAGAGGGAGAGGGCTTGCTGCATTTGTGTATGTATGTTGTGT
TTTGGCAACCAGCTTCTTGATCACTTTGAAATATGAACGCTGTATCTTTT
TCTGTACTACTCATTGCCTTTGGGGACGTGGCTAGAAGTGGAATTCGGCC
TCGGTGTCGATTGTGGGCTGGTCATTCTTTGTGGACGTGCAATGACCTCT
TGTTTTTTTCCTCCCCACCTTTCTTCTCTTTCTCAAAAAAGGAGGGAACG
GACTGGGACGGCGGCGTATACAAGGTAACAATGGAATTCTCGGAAGACTA
TCCGTCCAAGCCGCCCAAATGCAAGTTCGTACCGGCCCTCTTCCACCCGA
ACGTCTACCCGTCCGGCACTGTCTGCCTCTCCATCCTCAACGAAGACGAG
GACTGGCGGCCTGCCATCACGGTCAAGCAGATGCTGCTGGGCATTCAGGA
CCTGTTGGACAGCCCAAATCCCCAGAGTCCGGCCCAGGCGGAGGCCTACC
AGCTGTTTGTGACCAACCGGGAGGAGTACCGCCGCCGAGTGCGCATCGAG
GCCAAGCGCAACACGCCCGCAACTTAG
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Coding sequence (CDS) from alignment at chr22:358561..359337-

>NO22G01210.1 ID=NO22G01210.1|Name=NO22G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at chr22:358561..359337- (Nannochloropsis oceanica)
ATGAGTGGAGGCATCGCCCGGGGACGGTTGCAAGAGGAGAGGAAAGCCTG
GCGCAAGGACCACCCCCACGGCTTTATTGCGCGCCCTACAATGGGTGCCG
ATGGCTCGATGAACTTGATGGTCTGGGACTGTGGCATTCCGGGAAAGGAG
GGAACGGACTGGGACGGCGGCGTATACAAGGTAACAATGGAATTCTCGGA
AGACTATCCGTCCAAGCCGCCCAAATGCAAGTTCGTACCGGCCCTCTTCC
ACCCGAACGTCTACCCGTCCGGCACTGTCTGCCTCTCCATCCTCAACGAA
GACGAGGACTGGCGGCCTGCCATCACGGTCAAGCAGATGCTGCTGGGCAT
TCAGGACCTGTTGGACAGCCCAAATCCCCAGAGTCCGGCCCAGGCGGAGG
CCTACCAGCTGTTTGTGACCAACCGGGAGGAGTACCGCCGCCGAGTGCGC
ATCGAGGCCAAGCGCAACACGCCCGCAACTTAG
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Synonyms
Publications