NO22G01150, NO22G01150 (gene) Nannochloropsis oceanica

Overview
NameNO22G01150
Unique NameNO22G01150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length366
Alignment locationchr22:344572..344937 +

Link to JBrowse

Properties
Property NameValue
Descriptionsmall nuclear ribonucleoprotein associated protein B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:344572..344937 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
Vocabulary: Cellular Component
TermDefinition
GO:0031417NatC complex
Homology
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BLAST of NO22G01150 vs. NCBI_GenBank
Match: EWM21466.1 (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 1.900e-22
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 0 
Query:   14 AKAG------LQAVATMRGLLQSTLRVTLSDGRVVTGKYQCLDEHLNFILQGATERRVVRERAGEQGRVDRQEVRNLGLVMLPGKHTVKVEVKEVGRDPLE 109
            AKAG      L+A A +RGLL S LRVTLSDGR VTG+YQC+DEHLN IL+ A+ERR +  RAG    V+  +VR+LGLVMLPGKH V+VEVK  GRDPLE
Sbjct:    7 AKAGGSGVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK--GRDPLE 105
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BLAST of NO22G01150 vs. NCBI_GenBank
Match: XP_002788058.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EER19854.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 63.5 bits (153), Expect = 5.100e-7
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 0 
Query:   24 MRGLLQSTLRVTLSDGRVVTGKYQCLDEHLNFILQGATERRVVRERAGEQGRVDRQEVRNLGLVMLPGKHTVKVE 99
            +  LL   LR+TL+DGR +TG+  C+D+  N +L+ A ERR   E       +     R++G+VM+PGK  VK+E
Sbjct:   13 LSSLLHKPLRITLTDGREITGRLYCIDDKKNIVLRNAVERRKGNEVTPLTIGLKSSSTRSIGMVMIPGKDAVKIE 87
The following BLAST results are available for this feature:
BLAST of NO22G01150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21466.11.900e-2264.36ribonucleoprotein LSM [Nannochloropsis gaditana][more]
XP_002788058.15.100e-740.00conserved hypothetical protein [Perkinsus marinus ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01150.1NO22G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595660gene_7116Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g33gene8961Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01150.1NO22G01150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01150 ID=NO22G01150|Name=NO22G01150|organism=Nannochloropsis oceanica|type=gene|length=366bp
ATGACGGAGCACGTCGCCTCCGCCTCGGCCATTGCGGCCGCCAAAGCAGG
ACTACAAGCCGTGGCGACCATGCGGGGACTACTGCAGAGCACATTGCGTG
TGACGCTATCAGATGGAAGGGTAGTGACGGGCAAGTATCAGTGTTTGGAC
GAACATCTAAACTTCATCTTGCAGGGGGCGACGGAGCGGAGAGTGGTTAG
GGAAAGGGCGGGTGAACAAGGGAGAGTAGACAGGCAGGAGGTGAGAAATT
TGGGGTTGGTAATGCTGCCGGGTAAGCATACGGTCAAGGTAGAGGTAAAG
GAAGTAGGGAGGGACCCGCTGGAGAATCCTCGGGCGGTGAGGAATGAGGG
TGCGGGGTTACCATAA
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protein sequence of NO22G01150.1

>NO22G01150.1-protein ID=NO22G01150.1-protein|Name=NO22G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MTEHVASASAIAAAKAGLQAVATMRGLLQSTLRVTLSDGRVVTGKYQCLD
EHLNFILQGATERRVVRERAGEQGRVDRQEVRNLGLVMLPGKHTVKVEVK
EVGRDPLENPRAVRNEGAGLP*
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Synonyms
Publications