NO22G01150.1, NO22G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01150.1
Unique NameNO22G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length366
Alignment locationchr22:344572..344937 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:344572..344937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01150.1 vs.
Match: EWM21466.1 (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 1.900e-22
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 0 
Query:   14 AKAG------LQAVATMRGLLQSTLRVTLSDGRVVTGKYQCLDEHLNFILQGATERRVVRERAGEQGRVDRQEVRNLGLVMLPGKHTVKVEVKEVGRDPLE 109
            AKAG      L+A A +RGLL S LRVTLSDGR VTG+YQC+DEHLN IL+ A+ERR +  RAG    V+  +VR+LGLVMLPGKH V+VEVK  GRDPLE
Sbjct:    7 AKAGGSGVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK--GRDPLE 105
The following BLAST results are available for this feature:
BLAST of NO22G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21466.11.900e-2264.36ribonucleoprotein LSM [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01150NO22G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01150.1NO22G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01150.1.cds1NO22G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01150.1 ID=NO22G01150.1|Name=NO22G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=366bp
ATGACGGAGCACGTCGCCTCCGCCTCGGCCATTGCGGCCGCCAAAGCAGG
ACTACAAGCCGTGGCGACCATGCGGGGACTACTGCAGAGCACATTGCGTG
TGACGCTATCAGATGGAAGGGTAGTGACGGGCAAGTATCAGTGTTTGGAC
GAACATCTAAACTTCATCTTGCAGGGGGCGACGGAGCGGAGAGTGGTTAG
GGAAAGGGCGGGTGAACAAGGGAGAGTAGACAGGCAGGAGGTGAGAAATT
TGGGGTTGGTAATGCTGCCGGGTAAGCATACGGTCAAGGTAGAGGTAAAG
GAAGTAGGGAGGGACCCGCTGGAGAATCCTCGGGCGGTGAGGAATGAGGG
TGCGGGGTTACCATAA
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protein sequence of NO22G01150.1

>NO22G01150.1-protein ID=NO22G01150.1-protein|Name=NO22G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MTEHVASASAIAAAKAGLQAVATMRGLLQSTLRVTLSDGRVVTGKYQCLD
EHLNFILQGATERRVVRERAGEQGRVDRQEVRNLGLVMLPGKHTVKVEVK
EVGRDPLENPRAVRNEGAGLP*
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mRNA from alignment at chr22:344572..344937+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01150.1 ID=NO22G01150.1|Name=NO22G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=366bp|location=Sequence derived from alignment at chr22:344572..344937+ (Nannochloropsis oceanica)
ATGACGGAGCACGTCGCCTCCGCCTCGGCCATTGCGGCCGCCAAAGCAGG
ACTACAAGCCGTGGCGACCATGCGGGGACTACTGCAGAGCACATTGCGTG
TGACGCTATCAGATGGAAGGGTAGTGACGGGCAAGTATCAGTGTTTGGAC
GAACATCTAAACTTCATCTTGCAGGGGGCGACGGAGCGGAGAGTGGTTAG
GGAAAGGGCGGGTGAACAAGGGAGAGTAGACAGGCAGGAGGTGAGAAATT
TGGGGTTGGTAATGCTGCCGGGTAAGCATACGGTCAAGGTAGAGGTAAAG
GAAGTAGGGAGGGACCCGCTGGAGAATCCTCGGGCGGTGAGGAATGAGGG
TGCGGGGTTACCATAA
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Coding sequence (CDS) from alignment at chr22:344572..344937+

>NO22G01150.1 ID=NO22G01150.1|Name=NO22G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at chr22:344572..344937+ (Nannochloropsis oceanica)
ATGACGGAGCACGTCGCCTCCGCCTCGGCCATTGCGGCCGCCAAAGCAGG
ACTACAAGCCGTGGCGACCATGCGGGGACTACTGCAGAGCACATTGCGTG
TGACGCTATCAGATGGAAGGGTAGTGACGGGCAAGTATCAGTGTTTGGAC
GAACATCTAAACTTCATCTTGCAGGGGGCGACGGAGCGGAGAGTGGTTAG
GGAAAGGGCGGGTGAACAAGGGAGAGTAGACAGGCAGGAGGTGAGAAATT
TGGGGTTGGTAATGCTGCCGGGTAAGCATACGGTCAAGGTAGAGGTAAAG
GAAGTAGGGAGGGACCCGCTGGAGAATCCTCGGGCGGTGAGGAATGAGGG
TGCGGGGTTACCATAA
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Synonyms
Publications