NO22G01010, NO22G01010 (gene) Nannochloropsis oceanica

Overview
NameNO22G01010
Unique NameNO22G01010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length759
Alignment locationchr22:316012..316770 -

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Properties
Property NameValue
DescriptionDynein light chain Tctex-type 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:316012..316770 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005334Tctex
Homology
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: XP_018899532.1 (PREDICTED: dynein light chain Tctex-type 1 [Bemisia tabaci])

HSP 1 Score: 70.5 bits (171), Expect = 5.200e-9
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 0 
Query:   58 KVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            + IE  +G +  +   +V  W+  V  +   AL       E+++++ VT TI+Q+NG GL TSS+  WD ATD + TV WEN+ + C+V VF LA+
Sbjct:   21 QAIEDAIGGNA-YQQSKVNQWTSTVVVSCLTALT----KLEKSFKYIVTCTIMQKNGAGLHTSSSCYWDNATDGSCTVRWENKTMYCIVSVFGLAI 111
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: XP_022904335.1 (dynein light chain Tctex-type-like [Onthophagus taurus])

HSP 1 Score: 70.5 bits (171), Expect = 5.200e-9
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0 
Query:   60 IEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            IE  +G  T++  E+V  WS QV  +  +AL       ++++++ VT +I+Q+ G GL T+S+  WD ATD   TV WEN+ + C+V VF LA+
Sbjct:   66 IEGTIGG-TVYQQEKVNQWSAQVSEHCLSAL----SKLKKSFKYVVTCSIMQKTGAGLHTASSCYWDSATDGTCTVRWENKTMYCIVSVFGLAI 154
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: EGI59031.1 (Dynein light chain Tctex-type [Acromyrmex echinatior])

HSP 1 Score: 70.1 bits (170), Expect = 6.800e-9
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0 
Query:   53 TTLSPKVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            +T+  + IE  +G +T +   +V  W+    +N   A +      ++ Y++ VT TI+Q+NG GL T+S+  WD ATD + TV WEN+ + C+V VF LA+
Sbjct:   24 STIIKEAIEVSIGGNT-YQHNKVNQWT----SNVVEACLGNLTKLQKAYKYIVTCTIMQKNGAGLHTASSCYWDNATDGSCTVRWENKTMYCIVSVFGLAL 119
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: XP_011064834.1 (PREDICTED: dynein light chain Tctex-type 1 [Acromyrmex echinatior] >XP_011064835.1 PREDICTED: dynein light chain Tctex-type 1 [Acromyrmex echinatior] >XP_011064836.1 PREDICTED: dynein light chain Tctex-type 1 [Acromyrmex echinatior] >XP_012060185.1 PREDICTED: dynein light chain Tctex-type 1 [Atta cephalotes] >XP_018044790.1 PREDICTED: dynein light chain Tctex-type 1 [Atta colombica] >XP_018044791.1 PREDICTED: dynein light chain Tctex-type 1 [Atta colombica] >XP_018301762.1 PREDICTED: dynein light chain Tctex-type 1 [Trachymyrmex zeteki] >XP_018301764.1 PREDICTED: dynein light chain Tctex-type 1 [Trachymyrmex zeteki] >XP_018301765.1 PREDICTED: dynein light chain Tctex-type 1 [Trachymyrmex zeteki] >XP_018301766.1 PREDICTED: dynein light chain Tctex-type 1 [Trachymyrmex zeteki] >XP_018301767.1 PREDICTED: dynein light chain Tctex-type 1 [Trachymyrmex zeteki] >XP_018351658.1 PREDICTED: dynein light chain Tctex-type 1 [Trachymyrmex septentrionalis] >XP_018351659.1 PREDICTED: dynein light chain Tctex-type 1 [Trachymyrmex septentrionalis] >XP_018351660.1 PREDICTED: dynein light chain Tctex-type 1 [Trachymyrmex septentrionalis] >XP_018351661.1 PREDICTED: dynein light chain Tctex-type 1 [Trachymyrmex septentrionalis] >KYM86661.1 Dynein light chain Tctex-type 1 [Atta colombica] >KYQ56774.1 Dynein light chain Tctex-type 1 [Trachymyrmex zeteki])

HSP 1 Score: 70.1 bits (170), Expect = 6.800e-9
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0 
Query:   53 TTLSPKVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            +T+  + IE  +G +T +   +V  W+    +N   A +      ++ Y++ VT TI+Q+NG GL T+S+  WD ATD + TV WEN+ + C+V VF LA+
Sbjct:   17 STIIKEAIEVSIGGNT-YQHNKVNQWT----SNVVEACLGNLTKLQKAYKYIVTCTIMQKNGAGLHTASSCYWDNATDGSCTVRWENKTMYCIVSVFGLAL 112
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: XP_012524614.1 (PREDICTED: dynein light chain Tctex-type [Monomorium pharaonis])

HSP 1 Score: 70.1 bits (170), Expect = 6.800e-9
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0 
Query:   53 TTLSPKVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            +T+  + IE  +G +T +   +V  W+    +N   A +      ++ Y++ VT TI+Q+NG GL T+S+  WD ATD + TV WEN+ + C+V VF LA+
Sbjct:   16 STIIKEAIEVSIGGNT-YQHNKVNQWT----SNVVEACLGNLTKLQKAYKYIVTCTIMQKNGAGLHTASSCYWDNATDGSCTVRWENKTMYCIVSVFGLAL 111
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: XP_018368351.1 (PREDICTED: dynein light chain Tctex-type 1, partial [Trachymyrmex cornetzi] >KYN15868.1 Dynein light chain Tctex-type 1, partial [Trachymyrmex cornetzi])

HSP 1 Score: 70.1 bits (170), Expect = 6.800e-9
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0 
Query:   53 TTLSPKVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            +T+  + IE  +G +T +   +V  W+    +N   A +      ++ Y++ VT TI+Q+NG GL T+S+  WD ATD + TV WEN+ + C+V VF LA+
Sbjct:    9 STIIKEAIEVSIGGNT-YQHNKVNQWT----SNVVEACLGNLTKLQKAYKYIVTCTIMQKNGAGLHTASSCYWDNATDGSCTVRWENKTMYCIVSVFGLAL 104
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: XP_019945334.1 (PREDICTED: dynein light chain Tctex-type 3 [Paralichthys olivaceus])

HSP 1 Score: 69.7 bits (169), Expect = 8.900e-9
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 0 
Query:   52 DTTLSPK-VIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            + T+S K  IE VLG  T ++  +V  W+  +  ++   LV     Q RT+++ V  TI+Q++G GL T+++  WD ATD N TV WEN+ + CVV VFA+A+
Sbjct:   16 EATVSVKECIEGVLGG-TDYNQNKVNQWTASIVEHSLTHLV----KQGRTFKYIVNCTIMQKSGAGLHTANSCYWDTATDGNCTVRWENRTMYCVVSVFAVAL 113
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: XP_005184571.1 (PREDICTED: dynein light chain Tctex-type [Musca domestica] >XP_013102923.1 PREDICTED: dynein light chain Tctex-type [Stomoxys calcitrans])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 0 
Query:   58 KVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            + IE  +G +  +  ++V  W+ QV  N  + L      +++ Y++ VT+ I+Q+NG GL T+S+  W+  TD + TV WEN+ + C+V VF LAV
Sbjct:   21 EAIESTIGGNA-YQHDKVNNWTGQVVENCLSMLT----KEQKPYKYIVTSMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV 111
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: XP_023304262.1 (dynein light chain Tctex-type [Lucilia cuprina])

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-8
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 0 
Query:   58 KVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            + IE  +G +  +  ++V  W+ QV  N  + L      +++ Y++ VT+ I+Q+NG GL T+S+  W+  TD + TV WEN+ + C+V VF LAV
Sbjct:   21 EAIESTIGGNA-YQHDKVNNWTGQVVENCLSMLT----KEQKPYKYIVTSMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV 111
[Close]
BLAST of NO22G01010 vs. NCBI_GenBank
Match: EFZ16906.1 (hypothetical protein SINV_13297, partial [Solenopsis invicta])

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-8
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 0 
Query:   58 KVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 154
            + IE  +G +T +   +V  W+    +N   A +      ++ Y++ VT TI+Q+NG GL T+S+  WD ATD + TV WEN+ + C+V VF LA+
Sbjct:   14 EAIEVSIGGNT-YQHNKVNQWT----SNVVEACLGNLTKLQKAYKYIVTCTIMQKNGAGLHTASSCYWDNATDGSCTVRWENKTMYCIVSVFGLAL 104
The following BLAST results are available for this feature:
BLAST of NO22G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_018899532.15.200e-938.54PREDICTED: dynein light chain Tctex-type 1 [Bemisi... [more]
XP_022904335.15.200e-939.36dynein light chain Tctex-type-like [Onthophagus ta... [more]
EGI59031.16.800e-936.63Dynein light chain Tctex-type [Acromyrmex echinati... [more]
XP_011064834.16.800e-936.63PREDICTED: dynein light chain Tctex-type 1 [Acromy... [more]
XP_012524614.16.800e-936.63PREDICTED: dynein light chain Tctex-type [Monomori... [more]
XP_018368351.16.800e-936.63PREDICTED: dynein light chain Tctex-type 1, partia... [more]
XP_019945334.18.900e-940.78PREDICTED: dynein light chain Tctex-type 3 [Parali... [more]
XP_005184571.11.500e-836.46PREDICTED: dynein light chain Tctex-type [Musca do... [more]
XP_023304262.11.500e-836.46dynein light chain Tctex-type [Lucilia cuprina][more]
EFZ16906.12.000e-837.50hypothetical protein SINV_13297, partial [Solenops... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004161NSK004161Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G01010.2NO22G01010.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G01010.1NO22G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595624gene_7102Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G01010.2NO22G01010.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G01010.1NO22G01010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G01010 ID=NO22G01010|Name=NO22G01010|organism=Nannochloropsis oceanica|type=gene|length=759bp
CAAAGATCTAAACAAGCAAACCATGACGAGAGACAGACCAGGGACCGGCA
CATTTACGTACCAGGAGCAAGTTAAGACCATTACGAATGAGgtaagctcc
tctcacacatacacgacgaccccgccagcgcccgccacagtctttttttg
tgaccgacccacatctccacatccggatactaccctgtcaccaaagGTGA
TTGAGAAAGTGCTGGGCTCGCACACCTTGTTCGACGGCGAGCGCGTGGGA
GGTTGGTCAGATCAGGTTGGGGCAAATGCCGCCGCCGCGCTCGTCGCACA
GTGCGGTGCCCAAGAAAGGACGTATCGTTTTGCAGgttcgtcacactgaa
tgggggtcgcagtgtagcaatcaggcgaataattgatagaatcctatcgt
ccccttggtctcctgcacccatagcttcaggcgccgtctactcattctca
ttccatgcgccccccttcttttcacccttcaatatccagTCACGACAACG
ATCGTCCAACGCAACGGCACTGGGCTCAGCACCAGCAGTGCCGCAGTATG
GGACAAAGCCACCGATTTCAACGTTACCGTCCTATGGGAGAACCAGGCGT
TGACATGCGTAGTCGTGGTTTTTGCGTTGGCTGTGTGAGAAAGGGCTTGC
GAAATGGACCACAACTTGAAAAAAAATCAAAATTGAGAACGGAATTATTG
GAGGGGTTATTTTTGACATGCATGCTGCAAGAGATGTTTCTTAAGTATCG
GTCAAAATG
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protein sequence of NO22G01010.2

>NO22G01010.2-protein ID=NO22G01010.2-protein|Name=NO22G01010.2|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MTRDRPGTGTFTYQEQVKTITNEVSSSHTYTTTPPAPATVFFCDRPTSPH
PDTTLSPKVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERT
YRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFA
LAV*
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protein sequence of NO22G01010.1

>NO22G01010.1-protein ID=NO22G01010.1-protein|Name=NO22G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MTRDRPGTGTFTYQEQVKTITNEVIEKVLGSHTLFDGERVGGWSDQVGAN
AAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTV
LWENQALTCVVVVFALAV*
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Synonyms
Publications