NO22G01010.1, NO22G01010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01010.1
Unique NameNO22G01010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length500
Alignment locationchr22:316012..316770 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:316012..316770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01010.1 vs.
Match: XP_022904335.1 (dynein light chain Tctex-type-like [Onthophagus taurus])

HSP 1 Score: 77.0 bits (188), Expect = 4.300e-11
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 0 
Query:    2 TRDRPGTGTFTYQEQ-----VKTITNEVIEKVLGSHTLFDGERVGGWSDQVGANAAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTVLWENQALTCVVVVFALAV 119
            T  RPG      + Q     V  I N+ IE  +G  T++  E+V  WS QV  +  +AL       ++++++ VT +I+Q+ G GL T+S+  WD ATD   TV WEN+ + C+V VF LA+
Sbjct:   38 TCQRPGAAMDDEENQFIVDDVSKIINDTIEGTIGG-TVYQQEKVNQWSAQVSEHCLSAL----SKLKKSFKYVVTCSIMQKTGAGLHTASSCYWDSATDGTCTVRWENKTMYCIVSVFGLAI 154
The following BLAST results are available for this feature:
BLAST of NO22G01010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_022904335.14.300e-1136.89dynein light chain Tctex-type-like [Onthophagus ta... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01010NO22G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01010.1NO22G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01010.1.cds1NO22G01010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01010.1.cds2NO22G01010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01010.1.cds3NO22G01010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01010.1 ID=NO22G01010.1|Name=NO22G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=500bp
CAAAGATCTAAACAAGCAAACCATGACGAGAGACAGACCAGGGACCGGCA
CATTTACGTACCAGGAGCAAGTTAAGACCATTACGAATGAGGTGATTGAG
AAAGTGCTGGGCTCGCACACCTTGTTCGACGGCGAGCGCGTGGGAGGTTG
GTCAGATCAGGTTGGGGCAAATGCCGCCGCCGCGCTCGTCGCACAGTGCG
GTGCCCAAGAAAGGACGTATCGTTTTGCAGTCACGACAACGATCGTCCAA
CGCAACGGCACTGGGCTCAGCACCAGCAGTGCCGCAGTATGGGACAAAGC
CACCGATTTCAACGTTACCGTCCTATGGGAGAACCAGGCGTTGACATGCG
TAGTCGTGGTTTTTGCGTTGGCTGTGTGAGAAAGGGCTTGCGAAATGGAC
CACAACTTGAAAAAAAATCAAAATTGAGAACGGAATTATTGGAGGGGTTA
TTTTTGACATGCATGCTGCAAGAGATGTTTCTTAAGTATCGGTCAAAATG
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protein sequence of NO22G01010.1

>NO22G01010.1-protein ID=NO22G01010.1-protein|Name=NO22G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MTRDRPGTGTFTYQEQVKTITNEVIEKVLGSHTLFDGERVGGWSDQVGAN
AAAALVAQCGAQERTYRFAVTTTIVQRNGTGLSTSSAAVWDKATDFNVTV
LWENQALTCVVVVFALAV*
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mRNA from alignment at chr22:316012..316770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01010.1 ID=NO22G01010.1|Name=NO22G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=759bp|location=Sequence derived from alignment at chr22:316012..316770- (Nannochloropsis oceanica)
CAAAGATCTAAACAAGCAAACCATGACGAGAGACAGACCAGGGACCGGCA
CATTTACGTACCAGGAGCAAGTTAAGACCATTACGAATGAGGTAAGCTCC
TCTCACACATACACGACGACCCCGCCAGCGCCCGCCACAGTCTTTTTTTG
TGACCGACCCACATCTCCACATCCGGATACTACCCTGTCACCAAAGGTGA
TTGAGAAAGTGCTGGGCTCGCACACCTTGTTCGACGGCGAGCGCGTGGGA
GGTTGGTCAGATCAGGTTGGGGCAAATGCCGCCGCCGCGCTCGTCGCACA
GTGCGGTGCCCAAGAAAGGACGTATCGTTTTGCAGGTTCGTCACACTGAA
TGGGGGTCGCAGTGTAGCAATCAGGCGAATAATTGATAGAATCCTATCGT
CCCCTTGGTCTCCTGCACCCATAGCTTCAGGCGCCGTCTACTCATTCTCA
TTCCATGCGCCCCCCTTCTTTTCACCCTTCAATATCCAGTCACGACAACG
ATCGTCCAACGCAACGGCACTGGGCTCAGCACCAGCAGTGCCGCAGTATG
GGACAAAGCCACCGATTTCAACGTTACCGTCCTATGGGAGAACCAGGCGT
TGACATGCGTAGTCGTGGTTTTTGCGTTGGCTGTGTGAGAAAGGGCTTGC
GAAATGGACCACAACTTGAAAAAAAATCAAAATTGAGAACGGAATTATTG
GAGGGGTTATTTTTGACATGCATGCTGCAAGAGATGTTTCTTAAGTATCG
GTCAAAATG
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Coding sequence (CDS) from alignment at chr22:316012..316770-

>NO22G01010.1 ID=NO22G01010.1|Name=NO22G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at chr22:316012..316770- (Nannochloropsis oceanica)
ATGACGAGAGACAGACCAGGGACCGGCACATTTACGTACCAGGAGCAAGT
TAAGACCATTACGAATGAGGTGATTGAGAAAGTGCTGGGCTCGCACACCT
TGTTCGACGGCGAGCGCGTGGGAGGTTGGTCAGATCAGGTTGGGGCAAAT
GCCGCCGCCGCGCTCGTCGCACAGTGCGGTGCCCAAGAAAGGACGTATCG
TTTTGCAGTCACGACAACGATCGTCCAACGCAACGGCACTGGGCTCAGCA
CCAGCAGTGCCGCAGTATGGGACAAAGCCACCGATTTCAACGTTACCGTC
CTATGGGAGAACCAGGCGTTGACATGCGTAGTCGTGGTTTTTGCGTTGGC
TGTGTGA
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Synonyms
Publications