NO22G00990, NO22G00990 (gene) Nannochloropsis oceanica

Overview
NameNO22G00990
Unique NameNO22G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length765
Alignment locationchr22:313014..313778 -

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Properties
Property NameValue
DescriptionWD40-repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:313014..313778 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO22G00990 vs. NCBI_GenBank
Match: EWM21446.1 (WD40-repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 140.6 bits (353), Expect = 6.800e-30
Identity = 77/133 (57.89%), Postives = 90/133 (67.67%), Query Frame = 0
Query:  118 GYQYHGPRHRYLAPILSARPLHGVAMGGVTSVKLSATGSMVLLGYGGVRV---SREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRG 248
            GY+Y G R  YLAPIL+ARPL GV++G +TSVKLS +GS+V+LGYGG R    SR  G      G H + EVYET RM RVRS+RSG           E+EDVNIARFHP   HGFVYGTKQG +CV+   RG
Sbjct:  479 GYRYQGQRQGYLAPILAARPLRGVSLGEITSVKLSPSGSLVMLGYGGARAVPGSRGAG------GGHTMVEVYETERMGRVRSVRSG-----------EDEDVNIARFHPIPAHGFVYGTKQGGLCVFATPRG 594          
BLAST of NO22G00990 vs. NCBI_GenBank
Match: OQR91411.1 (hypothetical protein ACHHYP_04705 [Achlya hypogyna])

HSP 1 Score: 74.3 bits (181), Expect = 6.000e-10
Identity = 50/118 (42.37%), Postives = 60/118 (50.85%), Query Frame = 0
Query:  132 ILSARPLHGVAMGGVTSVKLSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRGPF 250
            +L    L   A GGVTSVK S TG+ VLLGYG     R+  +   +   H V  +Y    M  V  + S            E +DVNIA FHP  GHGF+YGTKQGR+ V    RG F
Sbjct:  485 VLQTTLLAETAAGGVTSVKFSPTGAYVLLGYG----VRDRIQRINQFPLHRVTRIYRWEDMALVSHMES------------EVDDVNIALFHPLPGHGFIYGTKQGRLRVCYGYRGLF 586          
BLAST of NO22G00990 vs. NCBI_GenBank
Match: XP_012203511.1 (hypothetical protein SPRG_09000 [Saprolegnia parasitica CBS 223.65] >KDO25701.1 hypothetical protein SPRG_09000 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 73.9 bits (180), Expect = 7.800e-10
Identity = 49/118 (41.53%), Postives = 60/118 (50.85%), Query Frame = 0
Query:  132 ILSARPLHGVAMGGVTSVKLSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRGPF 250
            ++    L   A GGVTSVK S TG+ VLLGYG     R+  +   +   H V  +Y    M  V  + S            E +DVNIA FHP  GHGF+YGTKQGR+ V    RG F
Sbjct:  479 VMQTTLLAETAAGGVTSVKFSPTGAYVLLGYG----VRDRIQRINQFPLHRVTRIYRWEDMTLVSHMES------------EVDDVNIALFHPLPGHGFIYGTKQGRLRVCYGYRGHF 580          
BLAST of NO22G00990 vs. NCBI_GenBank
Match: OEU10831.1 (WD40 repeat-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.9 bits (180), Expect = 7.800e-10
Identity = 53/139 (38.13%), Postives = 67/139 (48.20%), Query Frame = 0
Query:  125 RHRYLAPILSARPLHGVAMGGVTSVKLSATGSMVLLGYGGVR---------VSREVG------REGEREGYHVVAEVYETG---RMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPK 246
            R   L  +LSA PL G     VT VK S      L+GY GVR          + E G         +   YH V  +Y+     +M  V ++ SG            ++DVNIARFHP +G+GFVYGTKQGRI V GP+
Sbjct: 1249 RRPRLGQLLSACPLDGTKASAVTCVKFSPCTEFCLIGY-GVREPHVEPPPTTTGETGDGTIYDAPSQHPPYHPVTAMYQVNMGEKMKHVSTMLSG------------DDDVNIARFHPDSGYGFVYGTKQGRIRVLGPR 1374          
BLAST of NO22G00990 vs. NCBI_GenBank
Match: XP_008607748.1 (hypothetical protein SDRG_03882 [Saprolegnia diclina VS20] >EQC38924.1 hypothetical protein SDRG_03882 [Saprolegnia diclina VS20])

HSP 1 Score: 73.6 bits (179), Expect = 1.000e-9
Identity = 48/108 (44.44%), Postives = 57/108 (52.78%), Query Frame = 0
Query:  142 AMGGVTSVKLSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRGPF 250
            A GGVTSVK S TG+ VLLGYG     R+  +   +   H V  +Y    M  V  + S            E +DVNIA FHP  GHGF+YGTKQGR+ V    RG F
Sbjct:  491 AAGGVTSVKFSPTGAYVLLGYG----VRDRIQRINQFPLHRVTRIYRWEDMTLVSHMES------------EVDDVNIALFHPLPGHGFIYGTKQGRLRVCYAYRGHF 582          
BLAST of NO22G00990 vs. NCBI_GenBank
Match: XP_002176655.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51118.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.6 bits (179), Expect = 1.000e-9
Identity = 48/117 (41.03%), Postives = 61/117 (52.14%), Query Frame = 0
Query:  129 LAPILSARPLHGVAMGGVTSVKLSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPK 246
            +  +L A PL G     VT VK S +    L+GYG     RE   EG    +H V  +Y      R+R     GG       +  ++DVNIARFHP +GHGFVYGTKQGR+ V  P+
Sbjct:  659 MGQLLEACPLDGAKASAVTCVKFSPSADFCLIGYG----VREPVVEGGCH-FHPVTALY------RIR-----GGMTHVSTMLSSDDDVNIARFHPDSGHGFVYGTKQGRVRVLSPR 759          
BLAST of NO22G00990 vs. NCBI_GenBank
Match: OQR97307.1 (hypothetical protein THRCLA_07020 [Thraustotheca clavata])

HSP 1 Score: 73.6 bits (179), Expect = 1.000e-9
Identity = 48/108 (44.44%), Postives = 57/108 (52.78%), Query Frame = 0
Query:  142 AMGGVTSVKLSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRGPF 250
            A GGVTSVK S TG+ VLLGYG     R+  +   +   H V  +Y    M  V  + S            E +DVNIA FHP  GHGF+YGTKQGR+ V    RG F
Sbjct:  494 AAGGVTSVKFSPTGAYVLLGYG----VRDRIQRINQFPLHRVTRIYRWEDMTLVSHMES------------EVDDVNIALFHPLPGHGFIYGTKQGRLRVCYGYRGQF 585          
BLAST of NO22G00990 vs. NCBI_GenBank
Match: XP_008876102.1 (hypothetical protein H310_11278 [Aphanomyces invadans] >ETV95401.1 hypothetical protein H310_11278 [Aphanomyces invadans])

HSP 1 Score: 70.9 bits (172), Expect = 6.600e-9
Identity = 48/121 (39.67%), Postives = 62/121 (51.24%), Query Frame = 0
Query:  129 LAPILSARPLHGVAMGGVTSVKLSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRGPF 250
            L  ++    L   A GGVTSVK S +G+ VLLGYG     R+  +   +   H V  +Y    M  V  + S            + +DVNIA FHP AG GF+YGTKQGR+ +  P RG F
Sbjct:  490 LGTVVQTALLAETAAGGVTSVKFSPSGAYVLLGYG----VRDRIQRINQFPLHRVTRMYRWEDMSLVSHVES------------DADDVNIALFHPLAGGGFLYGTKQGRVRLCRPWRGAF 594          
BLAST of NO22G00990 vs. NCBI_GenBank
Match: GAX10381.1 (hypothetical protein FisN_3Lh599 [Fistulifera solaris])

HSP 1 Score: 70.9 bits (172), Expect = 6.600e-9
Identity = 47/117 (40.17%), Postives = 60/117 (51.28%), Query Frame = 0
Query:  129 LAPILSARPLHGVAMGGVTSVKLSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPK 246
            L  +L A PL       VT VK S +    L+GY GVR         E EG H     +    + R+R     GG +     + + +DVNIARFHP +GHGFVYGTKQGR+ V  P+
Sbjct:  601 LGQLLEACPLDPAKASAVTCVKFSPSTDFCLIGY-GVR---------EPEGTH-----HPVSALYRIR-----GGMQHVSTMLSDMDDVNIARFHPDSGHGFVYGTKQGRVRVLSPR 697          
BLAST of NO22G00990 vs. NCBI_GenBank
Match: GAX20551.1 (hypothetical protein FisN_3Hh599 [Fistulifera solaris])

HSP 1 Score: 70.5 bits (171), Expect = 8.700e-9
Identity = 47/117 (40.17%), Postives = 60/117 (51.28%), Query Frame = 0
Query:  129 LAPILSARPLHGVAMGGVTSVKLSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPK 246
            L  +L A PL       VT VK S +    L+GY GVR         E EG H     +    + R+R     GG +     + + +DVNIARFHP +GHGFVYGTKQGR+ V  P+
Sbjct:  634 LGQLLEACPLDPAKASAVTCVKYSPSTDFCLIGY-GVR---------EPEGTH-----HPVSALYRIR-----GGMQHVSTMLSDMDDVNIARFHPDSGHGFVYGTKQGRVRVLSPR 730          
The following BLAST results are available for this feature:
BLAST of NO22G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21446.16.800e-3057.89WD40-repeat-containing protein [Nannochloropsis ga... [more]
OQR91411.16.000e-1042.37hypothetical protein ACHHYP_04705 [Achlya hypogyna... [more]
XP_012203511.17.800e-1041.53hypothetical protein SPRG_09000 [Saprolegnia paras... [more]
OEU10831.17.800e-1038.13WD40 repeat-like protein [Fragilariopsis cylindrus... [more]
XP_008607748.11.000e-944.44hypothetical protein SDRG_03882 [Saprolegnia dicli... [more]
XP_002176655.11.000e-941.03predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OQR97307.11.000e-944.44hypothetical protein THRCLA_07020 [Thraustotheca c... [more]
XP_008876102.16.600e-939.67hypothetical protein H310_11278 [Aphanomyces invad... [more]
GAX10381.16.600e-940.17hypothetical protein FisN_3Lh599 [Fistulifera sola... [more]
GAX20551.18.700e-940.17hypothetical protein FisN_3Hh599 [Fistulifera sola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004162NSK004162Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00990.1NO22G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567244gene_7100Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g16gene8975Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00990.1NO22G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00990 ID=NO22G00990|Name=NO22G00990|organism=Nannochloropsis oceanica|type=gene|length=765bp
ATGTGTGGGCAGGGGAGAAGAAAACAACAACCAGATCAGCTGCAGCAGCA
ACAGCAGCAGCAGCCAGAAGAATTGAAAGTGGAGGGGGAAGCAGCAGCAG
CAACAACAACAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGTCCACACCG
AGCTGGTACAACGACGTGCCCGCTGCCACAGGCATGGGTGGTGAGGAGAG
CGATGGTGGGGGAATTGCGGCAGACCCAAAGAACAAGAAAGAAGACCAGA
AAATGGACGGGAAGCAGCAGGAAGAGGACGGAGAGAAGAAAGGAAAGGAG
GTGCAGGAGGAAGAGGAGGAGTGGGAGGACGAGGAGGAGGCGGGAAAGGA
AGGGTATCAATATCACGGCCCTCGCCATAGATACTTGGCTCCTATTCTAT
CGGCGCGACCATTACATGGTGTAGCAATGGGAGGAGTGACTTCGGTCAAG
CTCTCGGCGACTGGCTCCATGGTGTTGCTAGGCTATGGGGGGGTAAGGGT
CTCCAGGGAAGTAGGGAGGGAGGGAGAGCGGGAGGGATACCATGTTGTGG
CGGAAGTGTATGAGACGGGGAGGATGGTAAGGGTGCGATCGTTGAGGAGT
GGGGGTGGGGAGGAAGGGAGGGAGAGAAGGGTAGAAGAGGAGGAAGATGT
GAATATCGCGAGGTTCCATCCAAGCGCGGGCCATGGGTTTGTGTACGGGA
CGAAGCAAGGGAGAATCTGTGTTTATGGGCCAAAGAGGGGCCCGTTCGGT
GTGGAGCGGGGGTAG
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protein sequence of NO22G00990.1

>NO22G00990.1-protein ID=NO22G00990.1-protein|Name=NO22G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MCGQGRRKQQPDQLQQQQQQQPEELKVEGEAAAATTTAAAAAAAAAASTP
SWYNDVPAATGMGGEESDGGGIAADPKNKKEDQKMDGKQQEEDGEKKGKE
VQEEEEEWEDEEEAGKEGYQYHGPRHRYLAPILSARPLHGVAMGGVTSVK
LSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRS
GGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRGPFG
VERG*
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Synonyms
Publications